revert changes in pipeline

danlu1 · danlu1 · commit 73296fb88b2a · 2025-11-14T18:30:36.000Z
diff --git a/genie_registry/bed.py b/genie_registry/bed.py
@@ -713,4 +713,4 @@ def _validate(self, beddf):
             total_error += error
             warning += warn
 
-        return (total_error, warning)
+        return (total_error, warning)
diff --git a/genie_registry/clinical.py b/genie_registry/clinical.py
@@ -1337,4 +1337,4 @@ def _cross_validate(self, clinicaldf) -> tuple:
 
         errors = errors_assay + errors_bed
         warnings = warnings_assay + warnings_bed
-        return errors, warnings
+        return errors, warnings
diff --git a/genie_registry/cna.py b/genie_registry/cna.py
@@ -244,4 +244,4 @@ def _validate(self, cnvDF, nosymbol_check):
                             ",".join(cnvDF["remapped"][duplicated]),
                         )
                     )
-        return (total_error, warning)
+        return (total_error, warning)
diff --git a/genie_registry/mutationsInCis.py b/genie_registry/mutationsInCis.py
@@ -116,4 +116,4 @@ def _validate(self, mutationInCisDf):
             )
             total_error += error
 
-        return total_error, warning
+        return total_error, warning

Original file line number	Diff line number	Diff line change
`@@ -244,4 +244,4 @@ def _validate(self, cnvDF, nosymbol_check):`
`244`	`244`	`",".join(cnvDF["remapped"][duplicated]),`
`245`	`245`	`)`
`246`	`246`	`)`
`247`		`- return (total_error, warning)`
	`247`	`+ return (total_error, warning)`
Original file line number	Diff line number	Diff line change
`@@ -116,4 +116,4 @@ def _validate(self, mutationInCisDf):`
`116`	`116`	`)`
`117`	`117`	`total_error += error`
`118`	`118`
`119`		`- return total_error, warning`
	`119`	`+ return total_error, warning`