[GEN-1954] Add Transcript_Exon as new additional maf column (#592)

rxu17 · web-flow · commit f810399e3efd · 2025-04-23T17:26:30.000-07:00
* add transcript_exon

* update to new annotation-tools ver
diff --git a/Dockerfile b/Dockerfile
@@ -83,7 +83,7 @@ WORKDIR /root/
 # Must move this git clone to after the install of Genie,
 # because must update cbioportal
 RUN git clone https://github.com/cBioPortal/cbioportal.git -b v5.3.19
-RUN git clone https://github.com/Sage-Bionetworks/annotation-tools.git -b 0.0.5
+RUN git clone https://github.com/Sage-Bionetworks/annotation-tools.git -b 0.0.6
 
 
 WORKDIR /root/Genie
diff --git a/genie/process_mutation.py b/genie/process_mutation.py
@@ -116,6 +116,7 @@
     "genomic_location_explanation",
     "Annotation_Status",
     "Variant_Classification",
+    "Transcript_Exon",
 ]
 
 

Original file line number	Diff line number	Diff line change
`@@ -116,6 +116,7 @@`
`116`	`116`	`"genomic_location_explanation",`
`117`	`117`	`"Annotation_Status",`
`118`	`118`	`"Variant_Classification",`
	`119`	`+ "Transcript_Exon",`
`119`	`120`	`]`
`120`	`121`
`121`	`122`