add perms to use docker dir

Author: rxu17

Dockerfile

@@ -1,18 +1,24 @@
 # uv + Python 3.10 preinstalled
 FROM ghcr.io/astral-sh/uv:python3.10-bookworm
-WORKDIR /root/cbioportal_export/
+WORKDIR /workspace/cbioportal_export
 
 COPY . .
 
 RUN uv sync --frozen --no-dev
 
+# make sure any UID can read/traverse
+RUN chmod -R a+rX /workspace/bioportal_export
+
 # from here on, use uv run or call python in .venv explicitly
-ENV PATH="/root/cbioportal_export/.venv/bin:$PATH"
+ENV PATH="/workspace/cbioportal_export/.venv/bin:$PATH"
 
-WORKDIR /root/
+WORKDIR /workspace/
 
 # clone dep repos
 RUN git clone https://github.com/rxu17/datahub-study-curation-tools.git -b upgrade-to-python3
 RUN git clone https://github.com/cBioPortal/cbioportal.git -b v6.3.2
 
-WORKDIR /root/cbioportal_export/
+RUN chmod -R a+rX /workspace/datahub-study-curation-tools /workspace/cbioportal
+
+
+WORKDIR /workspace/cbioportal_export