V24.11.2 (#1549)

* add new tests

* add unit tests

* ran black

* Update schematic/models/validate_attribute.py

Co-authored-by: BryanFauble <[email protected]>

* added tests

* Update README.md

* Update README.md

* add unit tests

* run black

* Update README.md

* temp commit

* remove old tests

* [FDS-2386] Synapse entity tracking and code concurrency updates (#1505)

* [FDS-2386] Synapse entity tracking and code concurrency updates

* ran black

* Update CODEOWNERS

* updated data model type rules to include error param

* fix validate type attribute to use msg level param

* added error handling

* run black

* create Node class

* sat up Node class so that nodes with no displayName fields cause an error on creation

* ran black

* ran mypy

* added new configs for CLI tests

* added new manifests for testing CLI commands

* automate manual CLI tests

* ran black

* Update CODEOWNERS

* Update scan_repo.yml

* Update .github/CODEOWNERS

* Update .github/workflows/scan_repo.yml

* Attach additional telemetry data to OTEL traces (#1519)

* Attach additional telemetry data to OTEL traces

* feat: added tracing for cross manifest validation and file name validation  (#1509)

* add tracing for GX validation

* temp commit

* Updating contribution doc to expect squash and merge (#1534)

* [FDS-2491] Integration tests for Schematic API Test plan (#1512)

Integration tests for Schematic API Test plan

* [FDS-2500] Add Integration Tests for: Manifest Validation (#1516)

* Add Integration Tests for: Manifest Validation

* [FDS-2449] Lock `sphinx` version and update `poetry.lock` (#1530)

Also install `typing-extensions` in the build

* manual test files now being saved in manifests folder

* manual test files now being saved in manifests folder

* remove lines to delete json files that were under git control

* ran black

* add try finally blocks to remove created files

* ran black

* add lines to remove created json files

* Update file annotation store process to require filename be present in order to annotate file

* add lines to remove created json files

* Revert "Update file annotation store process to require filename be present in order to annotate file"

This reverts commit f57c718.

* Don't attempt to annotate the table

* add code in finally blocks to reset config to default values, when tests change them

* complete submit manifest command test

* ran black

* add test for bug case

* update test for table tidyness

* remove unused import

* remove etag column if already present when building temp file view

* catch all exceptions to switch to sequential mode

* update test for updated data

* Revert "update test for updated data"

This reverts commit 255e3c0.

* Revert "catch all exceptions to switch to sequential mode"

This reverts commit 68b0b24.

* catch ValueErrors as well

* Updates for integration test failures (#1537)

* Updates for integration test failures, Config file reset and scope changes

* add todos for removing config resets

* [FDS-2525] Authenticated export of telemetry data (#1527)

* Authenticated export of telemetry data, updating to HTTP otel library

* temp reduce tests

* restore tests

* uncomment tests

* redid how files are deleted, manual tests values are set

* ran black

* [SCHEMATIC-157] Make some dependencies required to avoid `schematic CLI` commands from potentially erroring when doing a pip install (#1540)

* Make otel flash non-optional

* Add dependencies as non-optional

* Include schematic_api for now (#1547)

* update toml version to 24.11.1

---------

Co-authored-by: BryanFauble <[email protected]>
Co-authored-by: Jenny V Medina <[email protected]>
Co-authored-by: Thomas Yu <[email protected]>
Co-authored-by: Lingling <[email protected]>
Co-authored-by: GiaJordan <[email protected]>

Author: 6 people

pyproject.toml

@@ -1,6 +1,6 @@
 [tool.poetry]
 name = "schematicpy"
-version = "24.11.1"
+version = "24.11.2"
 description = "Package for biomedical data model and metadata ingress management"
 authors = [
     "Milen Nikolov <[email protected]>",
@@ -28,7 +28,8 @@ classifiers = [
 ]
 
 packages = [
-    { include = "schematic" }
+    { include = "schematic" },
+    { include = "schematic_api" }
 ]
 
 [tool.poetry.scripts]