Merge pull request #910 from Sage-Bionetworks/develop-ValidationJsonEndpoint

allow users to upload csv or json file when validating manifest using API endpoints

Author: linglp

api/openapi/api.yaml

@@ -152,9 +152,10 @@ paths:
             schema:
               type: object
               properties:
-                # csv_file will be the field name in
+                # file_name will be the field name in
                 # this multipart request
-                csv_file:
+                file_name:
+                  description: Upload a json or a csv file. 
                   type: string
                   format: binary
       parameters:
@@ -174,6 +175,23 @@ paths:
           description: Data Model Component
           example: Patient
           required: true
+        - in: query
+          name: json_str
+          required: false
+          schema:
+            type: string
+            nullable: false
+          description: A JSON object
+          example: '[{
+          "Patient ID": 123,
+          "Sex": "Female",
+          "Year of Birth": "",
+          "Diagnosis": "Healthy",
+          "Component": "Patient",
+          "Cancer Type": "Breast",
+          "Family History": "Breast, Lung",
+          }]'
+
       operationId: api.routes.validate_manifest_route
       responses:
         "200":

api/routes.py

@@ -272,12 +272,17 @@ def create_single_manifest(data_type, dataset_id=None):
     return all_results
 
 
-def validate_manifest_route(schema_url, data_type):
+def validate_manifest_route(schema_url, data_type, json_str=None):
     # call config_handler()
     config_handler()
 
     #Get path to temp file where manifest file contents will be saved
-    temp_path = save_file()
+    jsc = JsonConverter()
+
+    if json_str:
+        temp_path = jsc.convert_json_str_to_csv(json_str = json_str, file_name = "example_json")
+    else: 
+        temp_path = jsc.convert_json_file_to_csv("file_name")
 
     # get path to temporary JSON-LD file
     jsonld = get_temp_jsonld(schema_url)