Downstream build broke today with *e.g.* UndefVarError: `AbstractNonlinearTerminationMode` not defined in `SimpleNonlinearSolve`

[iago-lito]

EcologicalNetworkDynamics.jl is a direct consumer of DifferentialEquations.jl. Fresh install broke today on all our machines:

(fresh_env) pkg> add EcologicalNetworksDynamics

We are not able to determine whether this is a problem in our Project.toml/Manifest.toml or a failure in DifferentialEquations. Can someone help us diagnose?

Error log

PkgPrecompileError: The following 1 direct dependency failed to precompile:

EcologicalNetworksDynamics

Failed to precompile EcologicalNetworksDynamics [2fd9189a-c387-4076-88b7-22b33b5a4388] to "~/.julia/compiled/v1.11/EcologicalNetworksDynamics/jl_LngaX7".
WARNING: could not import DiffEqBase.AbstractNonlinearTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbstractSafeBestNonlinearTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbsNormTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbsSafeBestTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbsSafeTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbsTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.NormTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.RelNormTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.RelSafeBestTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.RelSafeTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.RelTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.SimpleNonlinearSolveTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.SteadyStateDiffEqTerminationMode into NonlinearSolve
WARNING: could not import DiffEqBase.AbstractNonlinearTerminationMode into SimpleNonlinearSolve
WARNING: could not import DiffEqBase.AbstractSafeNonlinearTerminationMode into SimpleNonlinearSolve
WARNING: could not import DiffEqBase.AbstractSafeBestNonlinearTerminationMode into SimpleNonlinearSolve
WARNING: could not import DiffEqBase.AbsNormTerminationMode into SimpleNonlinearSolve
ERROR: LoadError: UndefVarError: AbstractNonlinearTerminationMode not defined in SimpleNonlinearSolve
Stacktrace:
[1] top-level scope
@ ~/.julia/packages/SimpleNonlinearSolve/YQl3A/src/utils.jl:159
[2] include(mod::Module, _path::String)
@ Base ./Base.jl:557
[3] include(x::String)
@ SimpleNonlinearSolve ~/.julia/packages/SimpleNonlinearSolve/YQl3A/src/SimpleNonlinearSolve.jl:1
[4] top-level scope
@ ~/.julia/packages/SimpleNonlinearSolve/YQl3A/src/SimpleNonlinearSolve.jl:40
[5] include
@ ./Base.jl:557 [inlined]
[6] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[7] top-level scope
@ stdin:6
in expression starting at ~/.julia/packages/SimpleNonlinearSolve/YQl3A/src/utils.jl:159
in expression starting at /.julia/packages/SimpleNonlinearSolve/YQl3A/src/SimpleNonlinearSolve.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile SimpleNonlinearSolve [727e6d20-b764-4bd8-a329-72de5adea6c7] to "/.julia/compiled/v1.11/SimpleNonlinearSolve/jl_mcqjTT".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /.julia/packages/NonlinearSolve/sBl1H/src/NonlinearSolve.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile NonlinearSolve [8913a72c-1f9b-4ce2-8d82-65094dcecaec] to "/.julia/compiled/v1.11/NonlinearSolve/jl_QnDdnw".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /.julia/packages/DiffEqCallbacks/n5zrr/src/DiffEqCallbacks.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile DiffEqCallbacks [459566f4-90b8-5000-8ac3-15dfb0a30def] to "/.julia/compiled/v1.11/DiffEqCallbacks/jl_5z410Q".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /.julia/packages/SteadyStateDiffEq/hTUms/src/SteadyStateDiffEq.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile SteadyStateDiffEq [9672c7b4-1e72-59bd-8a11-6ac3964bc41f] to "/.julia/compiled/v1.11/SteadyStateDiffEq/jl_eNFLWl".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include
@ ./Base.jl:557 [inlined]
[23] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::String)
@ Base ./loading.jl:2881
[24] top-level scope
@ stdin:6
in expression starting at /.julia/packages/DifferentialEquations/eQbP8/src/DifferentialEquations.jl:1
in expression starting at stdin:6
ERROR: LoadError: Failed to precompile DifferentialEquations [0c46a032-eb83-5123-abaf-570d42b7fbaa] to "/.julia/compiled/v1.11/DifferentialEquations/jl_wY3bBb".
Stacktrace:
[1] error(s::String)
@ Base ./error.jl:35
[2] compilecache(pkg::Base.PkgId, path::String, internal_stderr::IO, internal_stdout::IO, keep_loaded_modules::Bool; flags::Cmd, cacheflags::Base.CacheFlags, reasons::Dict{String, Int64}, loadable_exts::Nothing)
@ Base ./loading.jl:3174
[3] (::Base.var"#1110#1111"{Base.PkgId})()
@ Base ./loading.jl:2579
[4] mkpidlock(f::Base.var"#1110#1111"{Base.PkgId}, at::String, pid::Int32; kwopts::@kwargs{stale_age::Int64, wait::Bool})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:95
[5] #mkpidlock#6
@ /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:90 [inlined]
[6] trymkpidlock(::Function, ::Vararg{Any}; kwargs::@kwargs{stale_age::Int64})
@ FileWatching.Pidfile /usr/share/julia/stdlib/v1.11/FileWatching/src/pidfile.jl:116
[7] #invokelatest#2
@ ./essentials.jl:1057 [inlined]
[8] invokelatest
@ ./essentials.jl:1052 [inlined]
[9] maybe_cachefile_lock(f::Base.var"#1110#1111"{Base.PkgId}, pkg::Base.PkgId, srcpath::String; stale_age::Int64)
@ Base ./loading.jl:3698
[10] maybe_cachefile_lock
@ ./loading.jl:3695 [inlined]
[11] _require(pkg::Base.PkgId, env::String)
@ Base ./loading.jl:2565
[12] __require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2388
[13] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[14] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[15] _require_prelocked(uuidkey::Base.PkgId, env::String)
@ Base ./loading.jl:2375
[16] macro expansion
@ ./loading.jl:2314 [inlined]
[17] macro expansion
@ ./lock.jl:273 [inlined]
[18] __require(into::Module, mod::Symbol)
@ Base ./loading.jl:2271
[19] #invoke_in_world#3
@ ./essentials.jl:1089 [inlined]
[20] invoke_in_world
@ ./essentials.jl:1086 [inlined]
[21] require(into::Module, mod::Symbol)
@ Base ./loading.jl:2260
[22] include(mod::Module, _path::String)
@ Base ./Base.jl:557
[23] include(x::String)
@ EcologicalNetworksDynamics ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/EcologicalNetworksDynamics.jl:1
[24] top-level scope
@ ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/EcologicalNetworksDynamics.jl:38
[25] include
@ ./Base.jl:557 [inlined]
[26] include_package_for_output(pkg::Base.PkgId, input::String, depot_path::Vector{String}, dl_load_path::Vector{String}, load_path::Vector{String}, concrete_deps::Vector{Pair{Base.PkgId, UInt128}}, source::Nothing)
@ Base ./loading.jl:2881
[27] top-level scope
@ stdin:6
in expression starting at ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/Internals/Internals.jl:5
in expression starting at ~/.julia/packages/EcologicalNetworksDynamics/R3OJZ/src/EcologicalNetworksDynamics.jl:1
in expression starting at stdin:

Output of using Pkg; Pkg.status()

Status `~/fresh_env/Project.toml`
  [2fd9189a] EcologicalNetworksDynamics v0.2.0

Output of using Pkg; Pkg.status(; mode = PKGMODE_MANIFEST)

status

Status `~/fresh_env/Manifest.toml` [47edcb42] ADTypes v1.14.0 [a4c015fc] ANSIColoredPrinters v0.0.1 [1520ce14] AbstractTrees v0.4.5 [7d9f7c33] Accessors v0.1.42 [79e6a3ab] Adapt v4.3.0 [66dad0bd] AliasTables v1.1.3 [a95523ee] AlmostBlockDiagonals v0.1.10 [ec485272] ArnoldiMethod v0.4.0 [4fba245c] ArrayInterface v7.18.0 [4c555306] ArrayLayouts v1.11.1 [aae01518] BandedMatrices v1.9.3 [d1d4a3ce] BitFlags v0.1.9 [62783981] BitTwiddlingConvenienceFunctions v0.1.6 [764a87c0] BoundaryValueDiffEq v5.16.0 [7227322d] BoundaryValueDiffEqAscher v1.5.0 [56b672f2] BoundaryValueDiffEqCore v1.8.0 [85d9eb09] BoundaryValueDiffEqFIRK v1.6.0 [1a22d4ce] BoundaryValueDiffEqMIRK v1.6.0 [9255f1d6] BoundaryValueDiffEqMIRKN v1.5.0 [ed55bfe0] BoundaryValueDiffEqShooting v1.6.0 [fa961155] CEnum v0.5.0 [2a0fbf3d] CPUSummary v0.2.6 [d360d2e6] ChainRulesCore v1.25.1 [fb6a15b2] CloseOpenIntervals v0.1.13 [944b1d66] CodecZlib v0.7.8 [38540f10] CommonSolve v0.2.4 [bbf7d656] CommonSubexpressions v0.3.1 [f70d9fcc] CommonWorldInvalidations v1.0.0 [34da2185] Compat v4.16.0 [a33af91c] CompositionsBase v0.1.2 [2569d6c7] ConcreteStructs v0.2.3 [f0e56b4a] ConcurrentUtilities v2.5.0 [187b0558] ConstructionBase v1.5.8 [adafc99b] CpuId v0.3.1 [a8cc5b0e] Crayons v4.1.1 [9a962f9c] DataAPI v1.16.0 [864edb3b] DataStructures v0.18.22 [e2d170a0] DataValueInterfaces v1.0.0 ⌅ [abce61dc] Decimals v0.4.1 [bcd4f6db] DelayDiffEq v5.52.0 [2b5f629d] DiffEqBase v6.167.0 ⌅ [459566f4] DiffEqCallbacks v3.9.1 [77a26b50] DiffEqNoiseProcess v5.24.1 [163ba53b] DiffResults v1.1.0 [b552c78f] DiffRules v1.15.1 [0c46a032] DifferentialEquations v7.16.1 [a0c0ee7d] DifferentiationInterface v0.6.48 [b4f34e82] Distances v0.10.12 [31c24e10] Distributions v0.25.118 [ffbed154] DocStringExtensions v0.9.3 [e30172f5] Documenter v1.9.0 [2fd9189a] EcologicalNetworksDynamics v0.2.0 [4e289a0a] EnumX v1.0.4 [f151be2c] EnzymeCore v0.8.8 [460bff9d] ExceptionUnwrapping v0.1.11 [d4d017d3] ExponentialUtilities v1.27.0 [e2ba6199] ExprTools v0.1.10 [55351af7] ExproniconLite v0.10.14 [411431e0] Extents v0.1.5 [9d29842c] FastAlmostBandedMatrices v0.1.4 [7034ab61] FastBroadcast v0.3.5 [9aa1b823] FastClosures v0.3.2 [442a2c76] FastGaussQuadrature v1.0.2 [29a986be] FastLapackInterface v2.0.4 [a4df4552] FastPower v1.1.1 [1a297f60] FillArrays v1.13.0 [6a86dc24] FiniteDiff v2.27.0 ⌅ [f6369f11] ForwardDiff v0.10.38 [069b7b12] FunctionWrappers v1.1.3 [77dc65aa] FunctionWrappersWrappers v0.1.3 ⌅ [d9f16b24] Functors v0.4.12 [46192b85] GPUArraysCore v0.2.0 [c145ed77] GenericSchur v0.5.4 [68eda718] GeoFormatTypes v0.4.4 [cf35fbd7] GeoInterface v1.4.1 [d7ba0133] Git v1.3.1 [86223c79] Graphs v1.12.0 [cd3eb016] HTTP v1.10.15 [3e5b6fbb] HostCPUFeatures v0.1.17 [34004b35] HypergeometricFunctions v0.3.28 [b5f81e59] IOCapture v0.2.5 [615f187c] IfElse v0.1.1 [d25df0c9] Inflate v0.1.5 [3587e190] InverseFunctions v0.1.17 [92d709cd] IrrationalConstants v0.2.4 [82899510] IteratorInterfaceExtensions v1.0.0 [692b3bcd] JLLWrappers v1.7.0 [682c06a0] JSON 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MbedTLS_jll v2.28.6+0 [14a3606d] MozillaCACerts_jll v2023.12.12 [4536629a] OpenBLAS_jll v0.3.27+1 [05823500] OpenLibm_jll v0.8.1+2 [efcefdf7] PCRE2_jll v10.42.0+1 [bea87d4a] SuiteSparse_jll v7.7.0+0 [83775a58] Zlib_jll v1.2.13+1 [8e850b90] libblastrampoline_jll v5.11.0+0 [8e850ede] nghttp2_jll v1.59.0+0 [3f19e933] p7zip_jll v17.4.0+2 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

Output of versioninfo()

Julia Version 1.11.3
Commit d63adeda50d (2025-01-21 19:42 UTC)
Build Info:
  Official https://julialang.org/ release
Platform Info:
  OS: Linux (x86_64-linux-gnu)
  CPU: 20 × 13th Gen Intel(R) Core(TM) i7-13700H
  WORD_SIZE: 64
  LLVM: libLLVM-16.0.6 (ORCJIT, goldmont)
Threads: 20 default, 0 interactive, 10 GC (on 20 virtual cores)

[ChrisRackauckas]

And you share the result of ]add SimpleNonlinearSolve@2?

[iago-lito]

This works fine @ChrisRackauckas :

(diffeq) pkg> add SimpleNonlinearSolve@2
   Resolving package versions...
    Updating `~/fresh_env/Project.toml`
  [727e6d20] + SimpleNonlinearSolve v2.2.0
    Updating `~/fresh_env/Manifest.toml`
  [47edcb42] + ADTypes v1.14.0
  <...>
  [8e850b90] + libblastrampoline_jll v5.11.0+0
        Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`

[EDIT:] Oh sorry I think I get it. Are you meaning that I should report this against NonLinearSolve?

[ChrisRackauckas]

Is that the same environment of your tests? I'm curious why you don't get v2 in your tests.

[iago-lito]

Indeed @ChrisRackauckas, our test environment has been left unattened for a while and it might have diverged from the package env. Possibly because it does not inherit the [compat] requirements from the package. I did not expect this to impact fresh install, but apparently it does? Not exactly sure how to best fix it.

I'll first attempt to copy the [compat] requirements from ./Project.toml to ./test/Project.toml and ]update both manifests simultaneously then. I'll close the issue here if this fixes our install.

[ChrisRackauckas]

in your project/manifest can you force the 2.0 and see if your tests go through? That's a bit odd.

I am doing a patch to the older version as SciML/SimpleNonlinearSolve.jl#168 but at the same time, I'm trying to figure out why so many reports are people stuck on the v1.

[iago-lito]

I'm sorry @ChrisRackauckas I'm confused what you are referring to as "2.0". We are currently depending on a version of DifferentialEquations called v7.13.0, right?

[ChrisRackauckas]

SimpleNonlinearSolve v2.

SIMDTypes v0.1.0 [476501e8] SLEEFPirates v0.6.43 [0bca4576] SciMLBase v2.79.0 [19f34311] SciMLJacobianOperators v0.1.1 [c0aeaf25] SciMLOperators v0.3.13 [53ae85a6] SciMLStructures v1.7.0 [efcf1570] Setfield v1.1.2 [777ac1f9] SimpleBufferStream v1.2.0 ⌅ [727e6d20] SimpleNonlinearSolve v1.12.3 [699a6c99] SimpleTraits v0.9.4 [ce78b400] SimpleUnPack v1.1.0 [a2af1166] SortingAlgorithms v1.2.1 [9f842d2f] SparseConnectivityTracer v0.6.15 [47a9eef4] SparseDiffTools v2.24.0 [0a514795] SparseMatrixColorings v0.4.14 [e56a9233] Sparspak v0.3.9 [276daf66] SpecialFunctions v2.5.0 [aedffcd0] Static v1.2.0 [0d7ed370] StaticArrayInterface v1.8.0 [90137ffa] StaticArrays v1.9.13 [1e83bf80] StaticArraysCore v1.4.3 [10745b16]

see in there, it's the one behind. It's then the one that fails. Why is it not v2 in your tests?

[iago-lito]

I guess the reason is our misunderstanding how the test environment works and should be managed on the long run. I am currently investigating this, and dropping this approach in favour of this one. Keeping you posted. Thank you for support.

[iago-lito]

@ChrisRackauckas Can reproduce when ] instantiateing with this simple Project.toml

[deps]
DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def"

[compat]
DiffEqCallbacks = "3.4"

[ChrisRackauckas]

Backport fix should be merged now. Let me know if you still have issues.

[ChrisRackauckas]

Oh you probably want to update to DiffEqCallbacks v4.

[iago-lito]

Well, I am still having an issue in the sense that the above Project.toml is still broken @ChrisRackauckas. And I suspect this in turn breaks our fresh ] add EcologicalNetworksDynamics.

Bumping DiffEqCallbacks to v4 seems to help indeed, but I am confused then:

• Does it mean we also have to issue a fix release of EcologicalNetworkDynamics just to bump DiffEqCallbacks?
• Does it mean that support for DiffEqCallbacks 3.4 is discontinued?
• If so, then what exactly is the purpose of checking in our Manifest.toml in the first place? Should we find another way to ensure reproducible builds for our end users?