From 6de06060c3c5a25077e325f978866c5007594cff Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 18 Jan 2025 18:52:15 +0530 Subject: [PATCH 01/22] PINNErrorVsTime Benchmark Updates --- benchmarks/PINNErrorsVsTime/Manifest.toml | 2629 +++++++++++------ benchmarks/PINNErrorsVsTime/Project.toml | 15 +- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 7 +- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 2 +- .../PINNErrorsVsTime/hamilton_jacobi_et.jmd | 2 +- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 2 +- .../PINNErrorsVsTime/nernst_planck_et.jmd | 2 +- 7 files changed, 1802 insertions(+), 857 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index 1fd416a02..0f54fd918 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -1,107 +1,186 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.7.2" +julia_version = "1.10.7" manifest_format = "2.0" -project_hash = "6f4f337ff8d460ed5fef8ba1088bfd29b5735c42" +project_hash = "aa05273300de37d6dbc3a9987aec26fb1646d1ff" + +[[deps.ADTypes]] +git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" +version = "0.2.7" [[deps.AbstractAlgebra]] -deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Markdown", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "774a46f9b06d1667a295e58e6e3cf0838f5dbb4d" +deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"] +git-tree-sha1 = "d7832de8cf7af26abac741f10372080ac6cb73df" uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.27.2" +version = "0.34.7" [[deps.AbstractFFTs]] -deps = ["ChainRulesCore", "LinearAlgebra"] -git-tree-sha1 = "69f7020bd72f069c219b5e8c236c1fa90d2cb409" +deps = ["LinearAlgebra"] +git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef" uuid = "621f4979-c628-5d54-868e-fcf4e3e8185c" -version = "1.2.1" +version = "1.5.0" +weakdeps = ["ChainRulesCore", "Test"] + + [deps.AbstractFFTs.extensions] + AbstractFFTsChainRulesCoreExt = "ChainRulesCore" + AbstractFFTsTestExt = "Test" + +[[deps.AbstractMCMC]] +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" +version = "4.4.2" [[deps.AbstractTrees]] -git-tree-sha1 = "5c0b629df8a5566a06f5fef5100b53ea56e465a0" +git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" uuid = "1520ce14-60c1-5f80-bbc7-55ef81b5835c" -version = "0.4.2" +version = "0.4.5" [[deps.Accessors]] -deps = ["Compat", "CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "LinearAlgebra", "MacroTools", "Requires", "Test"] -git-tree-sha1 = "c877a35749324754d3c8fffb09fc1f9db144ff8f" +deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] +git-tree-sha1 = "0ba8f4c1f06707985ffb4804fdad1bf97b233897" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.18" +version = "0.1.41" + + [deps.Accessors.extensions] + AxisKeysExt = "AxisKeys" + IntervalSetsExt = "IntervalSets" + LinearAlgebraExt = "LinearAlgebra" + StaticArraysExt = "StaticArrays" + StructArraysExt = "StructArrays" + TestExt = "Test" + UnitfulExt = "Unitful" + + [deps.Accessors.weakdeps] + AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" + IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + Requires = "ae029012-a4dd-5104-9daa-d747884805df" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.Adapt]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "195c5505521008abea5aee4f96930717958eac6f" +deps = ["LinearAlgebra", "Requires"] +git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.4.0" +version = "3.7.2" +weakdeps = ["StaticArrays"] + + [deps.Adapt.extensions] + AdaptStaticArraysExt = "StaticArrays" + +[[deps.AdvancedHMC]] +deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] +git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" +version = "0.5.5" + + [deps.AdvancedHMC.extensions] + AdvancedHMCCUDAExt = "CUDA" + AdvancedHMCMCMCChainsExt = "MCMCChains" + AdvancedHMCOrdinaryDiffEqExt = "OrdinaryDiffEq" + + [deps.AdvancedHMC.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + MCMCChains = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + +[[deps.AliasTables]] +deps = ["PtrArrays", "Random"] +git-tree-sha1 = "9876e1e164b144ca45e9e3198d0b689cadfed9ff" +uuid = "66dad0bd-aa9a-41b7-9441-69ab47430ed8" +version = "1.1.3" [[deps.ArgCheck]] -git-tree-sha1 = "a3a402a35a2f7e0b87828ccabbd5ebfbebe356b4" +git-tree-sha1 = "680b3b8759bd4c54052ada14e52355ab69e07876" uuid = "dce04be8-c92d-5529-be00-80e4d2c0e197" -version = "2.3.0" +version = "2.4.0" [[deps.ArgTools]] uuid = "0dad84c5-d112-42e6-8d28-ef12dabb789f" +version = "1.1.1" [[deps.ArnoldiMethod]] deps = ["LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "62e51b39331de8911e4a7ff6f5aaf38a5f4cc0ae" +git-tree-sha1 = "d57bd3762d308bded22c3b82d033bff85f6195c6" uuid = "ec485272-7323-5ecc-a04f-4719b315124d" -version = "0.2.0" +version = "0.4.0" [[deps.ArrayInterface]] -deps = ["ArrayInterfaceCore", "Compat", "IfElse", "LinearAlgebra", "Static"] -git-tree-sha1 = "0582b5976fc76523f77056e888e454f0f7732596" +deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "6.0.22" - -[[deps.ArrayInterfaceCore]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "40debc9f72d0511e12d817c7ca06a721b6423ba3" -uuid = "30b0a656-2188-435a-8636-2ec0e6a096e2" -version = "0.1.17" +version = "7.7.1" + + [deps.ArrayInterface.extensions] + ArrayInterfaceBandedMatricesExt = "BandedMatrices" + ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" + ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" + ArrayInterfaceTrackerExt = "Tracker" + + [deps.ArrayInterface.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" -[[deps.ArrayInterfaceGPUArrays]] -deps = ["Adapt", "ArrayInterfaceCore", "GPUArraysCore", "LinearAlgebra"] -git-tree-sha1 = "febba7add2873aecc0b6620b55969e73ec875bce" -uuid = "6ba088a2-8465-4c0a-af30-387133b534db" -version = "0.2.1" - -[[deps.ArrayInterfaceOffsetArrays]] -deps = ["ArrayInterface", "OffsetArrays", "Static"] -git-tree-sha1 = "c49f6bad95a30defff7c637731f00934c7289c50" -uuid = "015c0d05-e682-4f19-8f0a-679ce4c54826" -version = "0.1.6" +[[deps.Artifacts]] +uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" -[[deps.ArrayInterfaceStaticArrays]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceStaticArraysCore", "LinearAlgebra", "Static", "StaticArrays"] -git-tree-sha1 = "efb000a9f643f018d5154e56814e338b5746c560" -uuid = "b0d46f97-bff5-4637-a19a-dd75974142cd" -version = "0.1.4" +[[deps.Atomix]] +deps = ["UnsafeAtomics"] +git-tree-sha1 = "c3b238aa28c1bebd4b5ea4988bebf27e9a01b72b" +uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" +version = "1.0.1" -[[deps.ArrayInterfaceStaticArraysCore]] -deps = ["Adapt", "ArrayInterfaceCore", "LinearAlgebra", "StaticArraysCore"] -git-tree-sha1 = "a1e2cf6ced6505cbad2490532388683f1e88c3ed" -uuid = "dd5226c6-a4d4-4bc7-8575-46859f9c95b9" -version = "0.1.0" + [deps.Atomix.extensions] + AtomixCUDAExt = "CUDA" + AtomixMetalExt = "Metal" + AtomixoneAPIExt = "oneAPI" -[[deps.Artifacts]] -uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" + [deps.Atomix.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" -[[deps.AutoHashEquals]] -git-tree-sha1 = "45bb6705d93be619b81451bb2006b7ee5d4e4453" -uuid = "15f4f7f2-30c1-5605-9d31-71845cf9641f" -version = "0.2.0" +[[deps.AxisAlgorithms]] +deps = ["LinearAlgebra", "Random", "SparseArrays", "WoodburyMatrices"] +git-tree-sha1 = "01b8ccb13d68535d73d2b0c23e39bd23155fb712" +uuid = "13072b0f-2c55-5437-9ae7-d433b7a33950" +version = "1.1.0" -[[deps.BFloat16s]] -deps = ["LinearAlgebra", "Printf", "Random", "Test"] -git-tree-sha1 = "a598ecb0d717092b5539dbbe890c98bac842b072" -uuid = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" -version = "0.2.0" +[[deps.AxisArrays]] +deps = ["Dates", "IntervalSets", "IterTools", "RangeArrays"] +git-tree-sha1 = "16351be62963a67ac4083f748fdb3cca58bfd52f" +uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" +version = "0.4.7" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "Future", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables", "ZygoteRules"] -git-tree-sha1 = "b15a6bc52594f5e4a3b825858d1089618871bf9d" +deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] +git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.36" +version = "0.3.40" + + [deps.BangBang.extensions] + BangBangChainRulesCoreExt = "ChainRulesCore" + BangBangDataFramesExt = "DataFrames" + BangBangStaticArraysExt = "StaticArrays" + BangBangStructArraysExt = "StructArrays" + BangBangTypedTablesExt = "TypedTables" + + [deps.BangBang.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] uuid = "2a0f44e3-6c83-55bd-87e4-b1978d98bd5f" @@ -112,110 +191,111 @@ uuid = "9718e550-a3fa-408a-8086-8db961cd8217" version = "0.1.1" [[deps.Bijections]] -git-tree-sha1 = "fe4f8c5ee7f76f2198d5c2a06d3961c249cce7bd" +git-tree-sha1 = "d8b0439d2be438a5f2cd68ec158fe08a7b2595b7" uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04" -version = "0.1.4" +version = "0.1.9" + +[[deps.BitFlags]] +git-tree-sha1 = "0691e34b3bb8be9307330f88d1a3c3f25466c24d" +uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35" +version = "0.1.9" [[deps.BitTwiddlingConvenienceFunctions]] deps = ["Static"] -git-tree-sha1 = "eaee37f76339077f86679787a71990c4e465477f" +git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" -version = "0.1.4" +version = "0.1.6" [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "19a35467a82e236ff51bc17a3a44b69ef35185a2" +git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+0" +version = "1.0.8+4" [[deps.CEnum]] -git-tree-sha1 = "eb4cb44a499229b3b8426dcfb5dd85333951ff90" +git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" uuid = "fa961155-64e5-5f13-b03f-caf6b980ea82" -version = "0.4.2" +version = "0.5.0" [[deps.CPUSummary]] -deps = ["CpuId", "IfElse", "Static"] -git-tree-sha1 = "8a43595f7b3f7d6dd1e07ad9b94081e1975df4af" +deps = ["CpuId", "IfElse", "PrecompileTools", "Static"] +git-tree-sha1 = "5a97e67919535d6841172016c9530fd69494e5ec" uuid = "2a0fbf3d-bb9c-48f3-b0a9-814d99fd7ab9" -version = "0.1.25" +version = "0.2.6" [[deps.CSTParser]] deps = ["Tokenize"] -git-tree-sha1 = "3ddd48d200eb8ddf9cb3e0189fc059fd49b97c1f" +git-tree-sha1 = "0157e592151e39fa570645e2b2debcdfb8a0f112" uuid = "00ebfdb7-1f24-5e51-bd34-a7502290713f" -version = "3.3.6" - -[[deps.CUDA]] -deps = ["AbstractFFTs", "Adapt", "BFloat16s", "CEnum", "CompilerSupportLibraries_jll", "ExprTools", "GPUArrays", "GPUCompiler", "LLVM", "LazyArtifacts", "Libdl", "LinearAlgebra", "Logging", "Printf", "Random", "Random123", "RandomNumbers", "Reexport", "Requires", "SparseArrays", "SpecialFunctions", "TimerOutputs"] -git-tree-sha1 = "49549e2c28ffb9cc77b3689dc10e46e6271e9452" -uuid = "052768ef-5323-5732-b1bb-66c8b64840ba" -version = "3.12.0" +version = "3.4.3" [[deps.Cairo_jll]] -deps = ["Artifacts", "Bzip2_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "4b859a208b2397a7a623a03449e4636bdb17bcf2" +deps = ["Artifacts", "Bzip2_jll", "CompilerSupportLibraries_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "JLLWrappers", "LZO_jll", "Libdl", "Pixman_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "009060c9a6168704143100f36ab08f06c2af4642" uuid = "83423d85-b0ee-5818-9007-b63ccbeb887a" -version = "1.16.1+1" - -[[deps.Calculus]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "f641eb0a4f00c343bbc32346e1217b86f3ce9dad" -uuid = "49dc2e85-a5d0-5ad3-a950-438e2897f1b9" -version = "0.5.1" +version = "1.18.2+1" [[deps.ChainRules]] -deps = ["ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "Statistics", "StructArrays"] -git-tree-sha1 = "7e3da0024283dbba888e9187351a4bc776090325" +deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] +git-tree-sha1 = "4312d7869590fab4a4f789e97bd82f0a04eaaa05" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.43.0" +version = "1.72.2" [[deps.ChainRulesCore]] -deps = ["Compat", "LinearAlgebra", "SparseArrays"] -git-tree-sha1 = "80ca332f6dcb2508adba68f22f551adb2d00a624" +deps = ["Compat", "LinearAlgebra"] +git-tree-sha1 = "1713c74e00545bfe14605d2a2be1712de8fbcb58" uuid = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" -version = "1.15.3" +version = "1.25.1" +weakdeps = ["SparseArrays"] -[[deps.ChangesOfVariables]] -deps = ["ChainRulesCore", "LinearAlgebra", "Test"] -git-tree-sha1 = "38f7a08f19d8810338d4f5085211c7dfa5d5bdd8" -uuid = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" -version = "0.1.4" + [deps.ChainRulesCore.extensions] + ChainRulesCoreSparseArraysExt = "SparseArrays" [[deps.CloseOpenIntervals]] -deps = ["ArrayInterface", "Static"] -git-tree-sha1 = "5522c338564580adf5d58d91e43a55db0fa5fb39" +deps = ["Static", "StaticArrayInterface"] +git-tree-sha1 = "05ba0d07cd4fd8b7a39541e31a7b0254704ea581" uuid = "fb6a15b2-703c-40df-9091-08a04967cfa9" -version = "0.1.10" +version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "ded953804d019afa9a3f98981d99b33e3db7b6da" +git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.0" +version = "0.7.6" [[deps.ColorSchemes]] -deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "Random"] -git-tree-sha1 = "1fd869cc3875b57347f7027521f561cf46d1fcd8" +deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] +git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.19.0" +version = "3.27.1" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] -git-tree-sha1 = "eb7f0f8307f71fac7c606984ea5fb2817275d6e4" +git-tree-sha1 = "c7acce7a7e1078a20a285211dd73cd3941a871d6" uuid = "3da002f7-5984-5a60-b8a6-cbb66c0b333f" -version = "0.11.4" +version = "0.12.0" + + [deps.ColorTypes.extensions] + StyledStringsExt = "StyledStrings" + + [deps.ColorTypes.weakdeps] + StyledStrings = "f489334b-da3d-4c2e-b8f0-e476e12c162b" [[deps.ColorVectorSpace]] -deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "SpecialFunctions", "Statistics", "TensorCore"] -git-tree-sha1 = "d08c20eef1f2cbc6e60fd3612ac4340b89fea322" +deps = ["ColorTypes", "FixedPointNumbers", "LinearAlgebra", "Requires", "Statistics", "TensorCore"] +git-tree-sha1 = "8b3b6f87ce8f65a2b4f857528fd8d70086cd72b1" uuid = "c3611d14-8923-5661-9e6a-0046d554d3a4" -version = "0.9.9" +version = "0.11.0" +weakdeps = ["SpecialFunctions"] + + [deps.ColorVectorSpace.extensions] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Colors]] deps = ["ColorTypes", "FixedPointNumbers", "Reexport"] -git-tree-sha1 = "417b0ed7b8b838aa6ca0a87aadf1bb9eb111ce40" +git-tree-sha1 = "64e15186f0aa277e174aa81798f7eb8598e0157e" uuid = "5ae59095-9a9b-59fe-a467-6f913c188581" -version = "0.12.8" +version = "0.13.0" [[deps.Combinatorics]] git-tree-sha1 = "08c8b6831dc00bfea825826be0bc8336fc369860" @@ -223,53 +303,97 @@ uuid = "861a8166-3701-5b0c-9a16-15d98fcdc6aa" version = "1.0.2" [[deps.CommonMark]] -deps = ["Crayons", "JSON", "URIs"] -git-tree-sha1 = "4cd7063c9bdebdbd55ede1af70f3c2f48fab4215" +deps = ["Crayons", "PrecompileTools"] +git-tree-sha1 = "3faae67b8899797592335832fccf4b3c80bb04fa" uuid = "a80b9123-70ca-4bc0-993e-6e3bcb318db6" -version = "0.8.6" +version = "0.8.15" [[deps.CommonSolve]] -git-tree-sha1 = "332a332c97c7071600984b3c31d9067e1a4e6e25" +git-tree-sha1 = "0eee5eb66b1cf62cd6ad1b460238e60e4b09400c" uuid = "38540f10-b2f7-11e9-35d8-d573e4eb0ff2" -version = "0.2.1" +version = "0.2.4" [[deps.CommonSubexpressions]] -deps = ["MacroTools", "Test"] -git-tree-sha1 = "7b8a93dba8af7e3b42fecabf646260105ac373f7" +deps = ["MacroTools"] +git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" -version = "0.3.0" +version = "0.3.1" [[deps.Compat]] -deps = ["Base64", "Dates", "DelimitedFiles", "Distributed", "InteractiveUtils", "LibGit2", "Libdl", "LinearAlgebra", "Markdown", "Mmap", "Pkg", "Printf", "REPL", "Random", "SHA", "Serialization", "SharedArrays", "Sockets", "SparseArrays", "Statistics", "Test", "UUIDs", "Unicode"] -git-tree-sha1 = "9be8be1d8a6f44b96482c8af52238ea7987da3e3" +deps = ["TOML", "UUIDs"] +git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" uuid = "34da2185-b29b-5c13-b0c7-acf172513d20" -version = "3.45.0" +version = "4.16.0" +weakdeps = ["Dates", "LinearAlgebra"] + + [deps.Compat.extensions] + CompatLinearAlgebraExt = "LinearAlgebra" [[deps.CompilerSupportLibraries_jll]] deps = ["Artifacts", "Libdl"] uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" +version = "1.1.1+0" [[deps.ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "LinearAlgebra", "Requires"] -git-tree-sha1 = "65c1c763946ca8f4224b3d535f31cfd03341d26a" +deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "bc391f0c19fa242fb6f71794b949e256cfa3772c" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.12.5" +version = "0.15.17" + + [deps.ComponentArrays.extensions] + ComponentArraysAdaptExt = "Adapt" + ComponentArraysConstructionBaseExt = "ConstructionBase" + ComponentArraysGPUArraysExt = "GPUArrays" + ComponentArraysOptimisersExt = "Optimisers" + ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" + ComponentArraysReverseDiffExt = "ReverseDiff" + ComponentArraysSciMLBaseExt = "SciMLBase" + ComponentArraysTrackerExt = "Tracker" + ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces" + ComponentArraysZygoteExt = "Zygote" + + [deps.ComponentArrays.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" + ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.CompositeTypes]] -git-tree-sha1 = "d5b014b216dc891e81fea299638e4c10c657b582" +git-tree-sha1 = "bce26c3dab336582805503bed209faab1c279768" uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657" -version = "0.1.2" +version = "0.1.4" [[deps.CompositionsBase]] -git-tree-sha1 = "455419f7e328a1a2493cabc6428d79e951349769" +git-tree-sha1 = "802bb88cd69dfd1509f6670416bd4434015693ad" uuid = "a33af91c-f02d-484b-be07-31d278c5ca2b" -version = "0.1.1" +version = "0.1.2" +weakdeps = ["InverseFunctions"] + + [deps.CompositionsBase.extensions] + CompositionsBaseInverseFunctionsExt = "InverseFunctions" + +[[deps.ConcreteStructs]] +git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34" +uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471" +version = "0.2.3" + +[[deps.ConcurrentUtilities]] +deps = ["Serialization", "Sockets"] +git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127" +uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" +version = "2.4.3" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] -git-tree-sha1 = "6e47d11ea2776bc5627421d59cdcc1296c058071" +git-tree-sha1 = "b19db3927f0db4151cb86d073689f2428e524576" uuid = "8f4d0f93-b110-5947-807f-2305c1781a2d" -version = "1.7.0" +version = "1.10.2" [[deps.ConsoleProgressMonitor]] deps = ["Logging", "ProgressMeter"] @@ -279,20 +403,25 @@ version = "0.1.2" [[deps.ConstructionBase]] deps = ["LinearAlgebra"] -git-tree-sha1 = "59d00b3139a9de4eb961057eabb65ac6522be954" +git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.4.0" +version = "1.5.6" +weakdeps = ["IntervalSets", "StaticArrays"] + + [deps.ConstructionBase.extensions] + ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseStaticArraysExt = "StaticArrays" [[deps.ContextVariablesX]] deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "8ccaa8c655bc1b83d2da4d569c9b28254ababd6e" +git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.2" +version = "0.1.3" [[deps.Contour]] -git-tree-sha1 = "d05d9e7b7aedff4e5b51a029dced05cfb6125781" +git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" -version = "0.6.2" +version = "0.6.3" [[deps.CpuId]] deps = ["Markdown"] @@ -307,9 +436,9 @@ version = "4.1.1" [[deps.Cuba]] deps = ["Cuba_jll", "LinearAlgebra"] -git-tree-sha1 = "8fb163273547563ee7a0906b880b721646bf0f86" +git-tree-sha1 = "3a86c9b6f29a5ed3a5ffd9bffb0d4010e2e91f22" uuid = "8a292aeb-7a57-582c-b821-06e4c11590b1" -version = "2.2.0" +version = "2.3.0" [[deps.Cuba_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -330,15 +459,15 @@ uuid = "7bc98958-0e37-5d67-a6ac-a3a19030071a" version = "1.0.5+0" [[deps.DataAPI]] -git-tree-sha1 = "fb5f5316dd3fd4c5e7c30a24d50643b73e37cd40" +git-tree-sha1 = "abe83f3a2f1b857aac70ef8b269080af17764bbe" uuid = "9a962f9c-6df0-11e9-0e5d-c546b8b5ee8a" -version = "1.10.0" +version = "1.16.0" [[deps.DataStructures]] deps = ["Compat", "InteractiveUtils", "OrderedCollections"] -git-tree-sha1 = "d1fff3a548102f48987a52a2e0d114fa97d730f0" +git-tree-sha1 = "1d0a14036acb104d9e89698bd408f63ab58cdc82" uuid = "864edb3b-99cc-5e75-8d2d-829cb0a9cfe8" -version = "0.18.13" +version = "0.18.20" [[deps.DataValueInterfaces]] git-tree-sha1 = "bfc1187b79289637fa0ef6d4436ebdfe6905cbd6" @@ -349,6 +478,12 @@ version = "1.0.0" deps = ["Printf"] uuid = "ade2ca70-3891-5945-98fb-dc099432e06a" +[[deps.Dbus_jll]] +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "fc173b380865f70627d7dd1190dc2fce6cc105af" +uuid = "ee1fde0b-3d02-5ea6-8484-8dfef6360eab" +version = "1.14.10+0" + [[deps.DefineSingletons]] git-tree-sha1 = "0fba8b706d0178b4dc7fd44a96a92382c9065c2c" uuid = "244e2a9f-e319-4986-a169-4d1fe445cd52" @@ -356,133 +491,207 @@ version = "0.1.2" [[deps.DelimitedFiles]] deps = ["Mmap"] +git-tree-sha1 = "9e2f36d3c96a820c678f2f1f1782582fcf685bae" uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" - -[[deps.DensityInterface]] -deps = ["InverseFunctions", "Test"] -git-tree-sha1 = "80c3e8639e3353e5d2912fb3a1916b8455e2494b" -uuid = "b429d917-457f-4dbc-8f4c-0cc954292b1d" -version = "0.4.0" +version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterfaceCore", "ChainRulesCore", "DataStructures", "Distributions", "DocStringExtensions", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "Logging", "MuladdMacro", "NonlinearSolve", "Parameters", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "Setfield", "SparseArrays", "StaticArrays", "Statistics", "ZygoteRules"] -git-tree-sha1 = "6f37ad4a80f274ed32fdfcec3718aaa21f627e81" +deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.94.5" +version = "6.130.0" + + [deps.DiffEqBase.extensions] + DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" + DiffEqBaseMPIExt = "MPI" + DiffEqBaseMeasurementsExt = "Measurements" + DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" + DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseTrackerExt = "Tracker" + DiffEqBaseUnitfulExt = "Unitful" + DiffEqBaseZygoteExt = "Zygote" + + [deps.DiffEqBase.weakdeps] + Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "LinearAlgebra", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArrays"] -git-tree-sha1 = "cfef2afe8d73ed2d036b0e4b14a3f9b53045c534" +deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.23.1" +version = "2.35.0" + + [deps.DiffEqCallbacks.weakdeps] + OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" [[deps.DiffEqNoiseProcess]] -deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArrays", "Statistics"] -git-tree-sha1 = "baddd892e9a5dec5ccd3d8e71ec198251d3c5522" +deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "880d1fcf95e6492a4e7d65c2866dbdbf6580d4f8" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.12.1" +version = "5.24.0" + + [deps.DiffEqNoiseProcess.extensions] + DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" + + [deps.DiffEqNoiseProcess.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.DiffResults]] -deps = ["StaticArrays"] -git-tree-sha1 = "c18e98cba888c6c25d1c3b048e4b3380ca956805" +deps = ["StaticArraysCore"] +git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" uuid = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" -version = "1.0.3" +version = "1.1.0" [[deps.DiffRules]] deps = ["IrrationalConstants", "LogExpFunctions", "NaNMath", "Random", "SpecialFunctions"] -git-tree-sha1 = "28d605d9a0ac17118fe2c5e9ce0fbb76c3ceb120" +git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" -version = "1.11.0" +version = "1.15.1" + +[[deps.DispatchDoctor]] +deps = ["MacroTools", "Preferences"] +git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" +uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" +version = "0.4.19" + + [deps.DispatchDoctor.extensions] + DispatchDoctorChainRulesCoreExt = "ChainRulesCore" + DispatchDoctorEnzymeCoreExt = "EnzymeCore" + + [deps.DispatchDoctor.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" [[deps.Distances]] -deps = ["LinearAlgebra", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "3258d0659f812acde79e8a74b11f17ac06d0ca04" +deps = ["LinearAlgebra", "Statistics", "StatsAPI"] +git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.7" +version = "0.10.12" +weakdeps = ["ChainRulesCore", "SparseArrays"] + + [deps.Distances.extensions] + DistancesChainRulesCoreExt = "ChainRulesCore" + DistancesSparseArraysExt = "SparseArrays" [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" [[deps.Distributions]] -deps = ["ChainRulesCore", "DensityInterface", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Test"] -git-tree-sha1 = "aafa0665e3db0d3d0890cdc8191ea03dc279b042" +deps = ["AliasTables", "FillArrays", "LinearAlgebra", "PDMats", "Printf", "QuadGK", "Random", "SpecialFunctions", "Statistics", "StatsAPI", "StatsBase", "StatsFuns"] +git-tree-sha1 = "03aa5d44647eaec98e1920635cdfed5d5560a8b9" uuid = "31c24e10-a181-5473-b8eb-7969acd0382f" -version = "0.25.66" +version = "0.25.117" + + [deps.Distributions.extensions] + DistributionsChainRulesCoreExt = "ChainRulesCore" + DistributionsDensityInterfaceExt = "DensityInterface" + DistributionsTestExt = "Test" + + [deps.Distributions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DensityInterface = "b429d917-457f-4dbc-8f4c-0cc954292b1d" + Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.DocStringExtensions]] deps = ["LibGit2"] -git-tree-sha1 = "b19534d1895d702889b219c382a6e18010797f0b" +git-tree-sha1 = "2fb1e02f2b635d0845df5d7c167fec4dd739b00d" uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" -version = "0.8.6" +version = "0.9.3" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "StaticArrays", "Statistics"] -git-tree-sha1 = "ac425eea956013b51e7891bef3c33684b7d37029" +deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"] +git-tree-sha1 = "51b4b84d33ec5e0955b55ff4b748b99ce2c3faa9" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.5.11" +version = "0.6.7" [[deps.Downloads]] -deps = ["ArgTools", "LibCURL", "NetworkOptions"] +deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" - -[[deps.DualNumbers]] -deps = ["Calculus", "NaNMath", "SpecialFunctions"] -git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566" -uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74" -version = "0.6.8" +version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["DataStructures", "Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "d0fa82f39c2a5cdb3ee385ad52bc05c42cb4b9f0" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] +git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.4.5" +version = "0.5.7" -[[deps.EarCut_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3f3a2501fa7236e9b911e0f7a588c657e822bb6d" -uuid = "5ae413db-bbd1-5e63-b57d-d24a61df00f5" -version = "2.2.3+0" +[[deps.EnumX]] +git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" +uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" +version = "1.0.4" + +[[deps.EpollShim_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" +uuid = "2702e6a9-849d-5ed8-8c21-79e8b8f9ee43" +version = "0.0.20230411+1" + +[[deps.ExceptionUnwrapping]] +deps = ["Test"] +git-tree-sha1 = "d36f682e590a83d63d1c7dbd287573764682d12a" +uuid = "460bff9d-24e4-43bc-9d9f-a8973cb893f4" +version = "0.1.11" [[deps.Expat_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bad72f730e9e91c08d9427d5e8db95478a3c323d" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.4.8+0" +version = "2.6.4+3" [[deps.ExponentialUtilities]] -deps = ["ArrayInterfaceCore", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "b40c9037e1a33990466bc5d224ced34b34eebdb0" +deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] +git-tree-sha1 = "cae251c76f353e32d32d76fae2fea655eab652af" uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.18.0" +version = "1.27.0" +weakdeps = ["StaticArrays"] + + [deps.ExponentialUtilities.extensions] + ExponentialUtilitiesStaticArraysExt = "StaticArrays" [[deps.ExprTools]] -git-tree-sha1 = "56559bbef6ca5ea0c0818fa5c90320398a6fbf8d" +git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" -version = "0.1.8" - -[[deps.Extents]] -git-tree-sha1 = "5e1e4c53fa39afe63a7d356e30452249365fba99" -uuid = "411431e0-e8b7-467b-b5e0-f676ba4f2910" -version = "0.1.1" +version = "0.1.10" [[deps.FFMPEG]] deps = ["FFMPEG_jll"] -git-tree-sha1 = "b57e3acbe22f8484b4b5ff66a7499717fe1a9cc8" +git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" uuid = "c87230d0-a227-11e9-1b43-d7ebe4e7570a" -version = "0.4.1" +version = "0.4.2" [[deps.FFMPEG_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "Pkg", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] -git-tree-sha1 = "ccd479984c7838684b3ac204b716c89955c76623" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "JLLWrappers", "LAME_jll", "Libdl", "Ogg_jll", "OpenSSL_jll", "Opus_jll", "PCRE2_jll", "Zlib_jll", "libaom_jll", "libass_jll", "libfdk_aac_jll", "libvorbis_jll", "x264_jll", "x265_jll"] +git-tree-sha1 = "466d45dc38e15794ec7d5d63ec03d776a9aff36e" uuid = "b22a6f82-2f65-5046-a5b2-351ab43fb4e5" -version = "4.4.2+0" +version = "4.4.4+1" + +[[deps.FFTW]] +deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] +git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" +version = "1.8.0" + +[[deps.FFTW_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" +uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" +version = "3.3.10+3" [[deps.FLoops]] deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] -git-tree-sha1 = "4391d3ed58db9dc5a9883b23a0578316b4798b1f" +git-tree-sha1 = "0a2e5873e9a5f54abb06418d57a8df689336a660" uuid = "cc61a311-1640-44b5-9fba-1b764f453329" -version = "0.2.0" +version = "0.2.2" [[deps.FLoopsBase]] deps = ["ContextVariablesX"] @@ -491,10 +700,10 @@ uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" version = "0.1.1" [[deps.FastBroadcast]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "LinearAlgebra", "Polyester", "Static", "StrideArraysCore"] -git-tree-sha1 = "21cdeff41e5a1822c2acd7fc7934c5f450588e00" +deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] +git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.1" +version = "0.2.8" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -503,141 +712,162 @@ version = "0.3.2" [[deps.FastLapackInterface]] deps = ["LinearAlgebra"] -git-tree-sha1 = "f2f624311f5e3e74c0d7f8d17ec280d867cd342f" +git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "1.2.2" +version = "2.0.4" [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" [[deps.FillArrays]] -deps = ["LinearAlgebra", "Random", "SparseArrays", "Statistics"] -git-tree-sha1 = "246621d23d1f43e3b9c368bf3b72b2331a27c286" +deps = ["LinearAlgebra"] +git-tree-sha1 = "6a70198746448456524cb442b8af316927ff3e1a" uuid = "1a297f60-69ca-5386-bcde-b61e274b549b" -version = "0.13.2" +version = "1.13.0" +weakdeps = ["PDMats", "SparseArrays", "Statistics"] + + [deps.FillArrays.extensions] + FillArraysPDMatsExt = "PDMats" + FillArraysSparseArraysExt = "SparseArrays" + FillArraysStatisticsExt = "Statistics" [[deps.FiniteDiff]] -deps = ["ArrayInterfaceCore", "LinearAlgebra", "Requires", "Setfield", "SparseArrays", "StaticArrays"] -git-tree-sha1 = "5a2cff9b6b77b33b89f3d97a4d367747adce647e" +deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] +git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.15.0" +version = "2.26.2" + + [deps.FiniteDiff.extensions] + FiniteDiffBandedMatricesExt = "BandedMatrices" + FiniteDiffBlockBandedMatricesExt = "BlockBandedMatrices" + FiniteDiffSparseArraysExt = "SparseArrays" + FiniteDiffStaticArraysExt = "StaticArrays" + + [deps.FiniteDiff.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" [[deps.FixedPointNumbers]] deps = ["Statistics"] -git-tree-sha1 = "335bfdceacc84c5cdf16aadc768aa5ddfc5383cc" +git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" -version = "0.8.4" +version = "0.8.5" [[deps.Flux]] -deps = ["Adapt", "ArrayInterface", "CUDA", "ChainRulesCore", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "NNlibCUDA", "Optimisers", "ProgressLogging", "Random", "Reexport", "SparseArrays", "SpecialFunctions", "Statistics", "StatsBase", "Test", "Zygote"] -git-tree-sha1 = "9b5419ad6f043ac2b52f1b7f9a8ecb8762231214" +deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] +git-tree-sha1 = "f3b4e96288e8bee94cd1e230c1a9387d3e03f788" uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.13.5" - -[[deps.FoldsThreads]] -deps = ["Accessors", "FunctionWrappers", "InitialValues", "SplittablesBase", "Transducers"] -git-tree-sha1 = "eb8e1989b9028f7e0985b4268dabe94682249025" -uuid = "9c68100b-dfe1-47cf-94c8-95104e173443" -version = "0.1.1" +version = "0.14.21" + + [deps.Flux.extensions] + FluxAMDGPUExt = "AMDGPU" + FluxCUDAExt = "CUDA" + FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] + FluxEnzymeExt = "Enzyme" + FluxMPIExt = "MPI" + FluxMPINCCLExt = ["CUDA", "MPI", "NCCL"] + FluxMetalExt = "Metal" + + [deps.Flux.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.Fontconfig_jll]] -deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "21efd19106a55620a188615da6d3d06cd7f6ee03" +deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] +git-tree-sha1 = "21fac3c77d7b5a9fc03b0ec503aa1a6392c34d2b" uuid = "a3f928ae-7b40-5064-980b-68af3947d34b" -version = "2.13.93+0" +version = "2.15.0+0" -[[deps.Formatting]] -deps = ["Printf"] -git-tree-sha1 = "8339d61043228fdd3eb658d86c926cb282ae72a8" -uuid = "59287772-0a20-5a39-b81b-1366585eb4c0" -version = "0.4.2" +[[deps.Format]] +git-tree-sha1 = "9c68794ef81b08086aeb32eeaf33531668d5f5fc" +uuid = "1fa38f19-a742-5d3f-a2b9-30dd87b9d5f8" +version = "1.3.7" [[deps.ForwardDiff]] -deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions", "StaticArrays"] -git-tree-sha1 = "187198a4ed8ccd7b5d99c41b69c679269ea2b2d4" +deps = ["CommonSubexpressions", "DiffResults", "DiffRules", "LinearAlgebra", "LogExpFunctions", "NaNMath", "Preferences", "Printf", "Random", "SpecialFunctions"] +git-tree-sha1 = "a2df1b776752e3f344e5116c06d75a10436ab853" uuid = "f6369f11-7733-5829-9624-2563aa707210" -version = "0.10.32" +version = "0.10.38" +weakdeps = ["StaticArrays"] + + [deps.ForwardDiff.extensions] + ForwardDiffStaticArraysExt = "StaticArrays" [[deps.FreeType2_jll]] -deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "87eb71354d8ec1a96d4a7636bd57a7347dde3ef9" +deps = ["Artifacts", "Bzip2_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "786e968a8d2fb167f2e4880baba62e0e26bd8e4e" uuid = "d7e528f0-a631-5988-bf34-fe36492bcfd7" -version = "2.10.4+0" +version = "2.13.3+1" [[deps.FriBidi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "aa31987c2ba8704e23c6c8ba8a4f769d5d7e4f91" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "846f7026a9decf3679419122b49f8a1fdb48d2d5" uuid = "559328eb-81f9-559d-9380-de523a88c83c" -version = "1.0.10+0" +version = "1.0.16+0" [[deps.FunctionWrappers]] -git-tree-sha1 = "241552bc2209f0fa068b6415b1942cc0aa486bcc" +git-tree-sha1 = "d62485945ce5ae9c0c48f124a84998d755bae00e" uuid = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" -version = "1.1.2" +version = "1.1.3" + +[[deps.FunctionWrappersWrappers]] +deps = ["FunctionWrappers"] +git-tree-sha1 = "b104d487b34566608f8b4e1c39fb0b10aa279ff8" +uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" +version = "0.1.3" [[deps.Functors]] deps = ["LinearAlgebra"] -git-tree-sha1 = "a2657dd0f3e8a61dbe70fc7c122038bd33790af5" +git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.3.0" +version = "0.4.12" [[deps.Future]] deps = ["Random"] uuid = "9fa8497b-333b-5362-9e8d-4d0656e87820" [[deps.GLFW_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pkg", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll"] -git-tree-sha1 = "d972031d28c8c8d9d7b41a536ad7bb0c2579caca" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libglvnd_jll", "Xorg_libXcursor_jll", "Xorg_libXi_jll", "Xorg_libXinerama_jll", "Xorg_libXrandr_jll", "libdecor_jll", "xkbcommon_jll"] +git-tree-sha1 = "fcb0584ff34e25155876418979d4c8971243bb89" uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" -version = "3.3.8+0" +version = "3.4.0+2" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "73145f1d724b5ee0e90098aec39a65e9697429a6" +git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "8.4.2" +version = "9.1.0" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "d88b17a38322e153c519f5a9ed8d91e9baa03d8f" +git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.1" - -[[deps.GPUCompiler]] -deps = ["ExprTools", "InteractiveUtils", "LLVM", "Libdl", "Logging", "TimerOutputs", "UUIDs"] -git-tree-sha1 = "1067cd05184719ba86f19cf1d49d57f0bcbabbf6" -uuid = "61eb1bfa-7361-4325-ad38-22787b887f55" -version = "0.16.2" +version = "0.1.5" [[deps.GR]] -deps = ["Base64", "DelimitedFiles", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Pkg", "Printf", "Random", "RelocatableFolders", "Serialization", "Sockets", "Test", "UUIDs"] -git-tree-sha1 = "037a1ca47e8a5989cc07d19729567bb71bfabd0c" +deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] +git-tree-sha1 = "424c8f76017e39fdfcdbb5935a8e6742244959e8" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.66.0" +version = "0.73.10" [[deps.GR_jll]] -deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Pkg", "Qt5Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "c8ab731c9127cd931c93221f65d6a1008dad7256" +deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] +git-tree-sha1 = "b90934c8cb33920a8dc66736471dc3961b42ec9f" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.66.0+0" +version = "0.73.10+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "fb69b2a645fa69ba5f474af09221b9308b160ce6" +git-tree-sha1 = "af49a0851f8113fcfae2ef5027c6d49d0acec39b" uuid = "c145ed77-6b09-5dd9-b285-bf645a82121e" -version = "0.5.3" - -[[deps.GeoInterface]] -deps = ["Extents"] -git-tree-sha1 = "fb28b5dc239d0174d7297310ef7b84a11804dfab" -uuid = "cf35fbd7-0cd7-5166-be24-54bfbe79505f" -version = "1.0.1" - -[[deps.GeometryBasics]] -deps = ["EarCut_jll", "GeoInterface", "IterTools", "LinearAlgebra", "StaticArrays", "StructArrays", "Tables"] -git-tree-sha1 = "a7a97895780dab1085a97769316aa348830dc991" -uuid = "5c1252a2-5f33-56bf-86c9-59e7332b4326" -version = "0.4.3" +version = "0.5.4" [[deps.Gettext_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "XML2_jll"] @@ -647,33 +877,38 @@ version = "0.21.0+0" [[deps.Git]] deps = ["Git_jll"] -git-tree-sha1 = "d7bffc3fe097e9589145493c08c41297b457e5d0" +git-tree-sha1 = "04eff47b1354d702c3a85e8ab23d539bb7d5957e" uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2" -version = "1.2.1" +version = "1.3.1" [[deps.Git_jll]] -deps = ["Artifacts", "Expat_jll", "Gettext_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "6e93d42b97978709e9c941fa43d0f01701f0d290" +deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "399f4a308c804b446ae4c91eeafadb2fe2c54ff9" uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb" -version = "2.34.1+0" +version = "2.47.1+0" [[deps.Glib_jll]] -deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "a32d672ac2c967f3deb8a81d828afc739c838a06" +deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"] +git-tree-sha1 = "b0036b392358c80d2d2124746c2bf3d48d457938" uuid = "7746bdde-850d-59dc-9ae8-88ece973131d" -version = "2.68.3+2" +version = "2.82.4+0" + +[[deps.Glob]] +git-tree-sha1 = "97285bbd5230dd766e9ef6749b80fc617126d496" +uuid = "c27321d9-0574-5035-807b-f59d2c89b15c" +version = "1.3.1" [[deps.Graphite2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "344bf40dcab1073aca04aa0df4fb092f920e4011" +git-tree-sha1 = "01979f9b37367603e2848ea225918a3b3861b606" uuid = "3b182d85-2403-5c21-9c21-1e1f0cc25472" -version = "1.3.14+0" +version = "1.3.14+1" [[deps.Graphs]] deps = ["ArnoldiMethod", "Compat", "DataStructures", "Distributed", "Inflate", "LinearAlgebra", "Random", "SharedArrays", "SimpleTraits", "SparseArrays", "Statistics"] -git-tree-sha1 = "db5c7e27c0d46fd824d470a3c32a4fc6c935fa96" +git-tree-sha1 = "1dc470db8b1131cfc7fb4c115de89fe391b9e780" uuid = "86223c79-3864-5bf0-83f7-82e725a168b6" -version = "1.7.1" +version = "1.12.0" [[deps.Grisu]] git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" @@ -681,64 +916,64 @@ uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" [[deps.Groebner]] -deps = ["AbstractAlgebra", "Combinatorics", "Logging", "MultivariatePolynomials", "Primes", "Random"] -git-tree-sha1 = "144cd8158cce5b36614b9c95b8afab6911bd469b" +deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"] +git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8" uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" -version = "0.2.10" +version = "0.5.1" [[deps.GroupsCore]] deps = ["Markdown", "Random"] -git-tree-sha1 = "9e1a5e9f3b81ad6a5c613d181664a0efc6fe6dd7" +git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5" uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" -version = "0.4.0" +version = "0.4.2" [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] -git-tree-sha1 = "134af3b940d1ca25b19bc9740948157cee7ff8fa" +git-tree-sha1 = "19ef9f0cb324eed957b7fe7257ac84e8ed8a48ec" uuid = "19dc6840-f33b-545b-b366-655c7e3ffd49" -version = "1.5.0" +version = "1.7.0" [[deps.HTTP]] -deps = ["Base64", "CodecZlib", "Dates", "IniFile", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] -git-tree-sha1 = "ed47af35905b7cc8f1a522ca684b35a212269bd8" +deps = ["Base64", "CodecZlib", "ConcurrentUtilities", "Dates", "ExceptionUnwrapping", "Logging", "LoggingExtras", "MbedTLS", "NetworkOptions", "OpenSSL", "PrecompileTools", "Random", "SimpleBufferStream", "Sockets", "URIs", "UUIDs"] +git-tree-sha1 = "c67b33b085f6e2faf8bf79a61962e7339a81129c" uuid = "cd3eb016-35fb-5094-929b-558a96fad6f3" -version = "1.2.0" +version = "1.10.15" [[deps.HarfBuzz_jll]] -deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg"] -git-tree-sha1 = "129acf094d168394e80ee1dc4bc06ec835e510a3" +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "Glib_jll", "Graphite2_jll", "JLLWrappers", "Libdl", "Libffi_jll"] +git-tree-sha1 = "55c53be97790242c29031e5cd45e8ac296dadda3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" -version = "2.8.1+1" +version = "8.5.0+0" [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] -git-tree-sha1 = "f823a2d04fb233d52812c8024a6d46d9581904a4" +git-tree-sha1 = "9e13b8d8b1367d9692a90ea4711b4278e4755c32" uuid = "eafb193a-b7ab-5a9e-9068-77385905fa72" -version = "0.4.5" +version = "0.5.3" [[deps.HostCPUFeatures]] deps = ["BitTwiddlingConvenienceFunctions", "IfElse", "Libdl", "Static"] -git-tree-sha1 = "b7b88a4716ac33fe31d6556c02fc60017594343c" +git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" -version = "0.1.8" +version = "0.1.17" [[deps.HypergeometricFunctions]] -deps = ["DualNumbers", "LinearAlgebra", "OpenLibm_jll", "SpecialFunctions", "Test"] -git-tree-sha1 = "709d864e3ed6e3545230601f94e11ebc65994641" +deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] +git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.11" +version = "0.3.25" [[deps.IJulia]] -deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] -git-tree-sha1 = "98ab633acb0fe071b671f6c1785c46cd70bb86bd" +deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] +git-tree-sha1 = "1b1299f7d6617291f3d260e9f5b0250afdaac8c0" uuid = "7073ff75-c697-5162-941a-fcdaad2a7d2a" -version = "1.23.3" +version = "1.26.0" [[deps.IRTools]] -deps = ["InteractiveUtils", "MacroTools", "Test"] -git-tree-sha1 = "af14a478780ca78d5eb9908b263023096c2b9d64" +deps = ["InteractiveUtils", "MacroTools"] +git-tree-sha1 = "950c3717af761bc3ff906c2e8e52bd83390b6ec2" uuid = "7869d1d1-7146-5819-86e3-90919afe41df" -version = "0.4.6" +version = "0.4.14" [[deps.IfElse]] git-tree-sha1 = "debdd00ffef04665ccbb3e150747a77560e8fad1" @@ -746,103 +981,140 @@ uuid = "615f187c-cbe4-4ef1-ba3b-2fcf58d6d173" version = "0.1.1" [[deps.Inflate]] -git-tree-sha1 = "f5fc07d4e706b84f72d54eedcc1c13d92fb0871c" +git-tree-sha1 = "d1b1b796e47d94588b3757fe84fbf65a5ec4a80d" uuid = "d25df0c9-e2be-5dd7-82c8-3ad0b3e990b9" -version = "0.1.2" - -[[deps.IniFile]] -git-tree-sha1 = "f550e6e32074c939295eb5ea6de31849ac2c9625" -uuid = "83e8ac13-25f8-5344-8a64-a9f2b223428f" -version = "0.5.1" +version = "0.1.5" [[deps.InitialValues]] git-tree-sha1 = "4da0f88e9a39111c2fa3add390ab15f3a44f3ca3" uuid = "22cec73e-a1b8-11e9-2c92-598750a2cf9c" version = "0.3.1" +[[deps.InplaceOps]] +deps = ["LinearAlgebra", "Test"] +git-tree-sha1 = "50b41d59e7164ab6fda65e71049fee9d890731ff" +uuid = "505f98c9-085e-5b2c-8e89-488be7bf1f34" +version = "0.3.0" + [[deps.IntegerMathUtils]] -git-tree-sha1 = "f366daebdfb079fd1fe4e3d560f99a0c892e15bc" +git-tree-sha1 = "b8ffb903da9f7b8cf695a8bead8e01814aa24b30" uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" -version = "0.1.0" +version = "0.1.2" [[deps.Integrals]] -deps = ["ChainRulesCore", "CommonSolve", "Distributions", "ForwardDiff", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Reexport", "ReverseDiff", "SciMLBase", "Zygote", "ZygoteRules"] -git-tree-sha1 = "d07c925dcbaaacc8c109682643cb5826478d7b50" +deps = ["CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Reexport", "Requires", "SciMLBase"] +git-tree-sha1 = "44dd71130586e1776fde9041bd81f2e0db15db10" uuid = "de52edbc-65ea-441a-8357-d3a637375a31" -version = "3.1.1" +version = "3.9.0" + + [deps.Integrals.extensions] + IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" + IntegralsForwardDiffExt = "ForwardDiff" + IntegralsZygoteExt = ["Zygote", "ChainRulesCore"] + + [deps.Integrals.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.IntegralsCuba]] deps = ["Cuba", "Integrals"] -git-tree-sha1 = "867d595d2d0beb82cbdbbcdde3d2c236712ce58e" +git-tree-sha1 = "dced02165f61703510f4498c15698e6ac007f6e5" uuid = "e00cd5f1-6337-4131-8b37-28b2fe4cd6cb" -version = "0.2.0" +version = "0.3.0" [[deps.IntegralsCubature]] deps = ["Cubature", "Integrals"] -git-tree-sha1 = "203da18b88100351e7094e09bcee055715e0ac9a" +git-tree-sha1 = "2124372650ff7443d35c475a9cb83d283906a030" uuid = "c31f79ba-6e32-46d4-a52f-182a8ac42a54" -version = "0.2.0" +version = "0.2.3" + +[[deps.IntelOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] +git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" +uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" +version = "2024.2.1+0" [[deps.InteractiveUtils]] deps = ["Markdown"] uuid = "b77e0a4c-d291-57a0-90e8-8db25a27a240" +[[deps.Interpolations]] +deps = ["Adapt", "AxisAlgorithms", "ChainRulesCore", "LinearAlgebra", "OffsetArrays", "Random", "Ratios", "Requires", "SharedArrays", "SparseArrays", "StaticArrays", "WoodburyMatrices"] +git-tree-sha1 = "88a101217d7cb38a7b481ccd50d21876e1d1b0e0" +uuid = "a98d9a8b-a2ab-59e6-89dd-64a1c18fca59" +version = "0.15.1" +weakdeps = ["Unitful"] + + [deps.Interpolations.extensions] + InterpolationsUnitfulExt = "Unitful" + [[deps.IntervalSets]] -deps = ["Dates", "Random", "Statistics"] -git-tree-sha1 = "57af5939800bce15980bddd2426912c4f83012d8" +git-tree-sha1 = "dba9ddf07f77f60450fe5d2e2beb9854d9a49bd0" uuid = "8197267c-284f-5f27-9208-e0e47529a953" -version = "0.7.1" +version = "0.7.10" +weakdeps = ["Random", "RecipesBase", "Statistics"] + + [deps.IntervalSets.extensions] + IntervalSetsRandomExt = "Random" + IntervalSetsRecipesBaseExt = "RecipesBase" + IntervalSetsStatisticsExt = "Statistics" [[deps.InverseFunctions]] -deps = ["Test"] -git-tree-sha1 = "b3364212fb5d870f724876ffcd34dd8ec6d98918" +git-tree-sha1 = "a779299d77cd080bf77b97535acecd73e1c5e5cb" uuid = "3587e190-3f89-42d0-90ee-14403ec27112" -version = "0.1.7" +version = "0.1.17" +weakdeps = ["Dates", "Test"] + + [deps.InverseFunctions.extensions] + InverseFunctionsDatesExt = "Dates" + InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] -git-tree-sha1 = "7fd44fd4ff43fc60815f8e764c0f352b83c49151" +git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.1.1" +version = "0.2.2" [[deps.IterTools]] -git-tree-sha1 = "fa6287a4469f5e048d763df38279ee729fbd44e5" +git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" uuid = "c8e1da08-722c-5040-9ed9-7db0dc04731e" -version = "1.4.0" - -[[deps.IterativeSolvers]] -deps = ["LinearAlgebra", "Printf", "Random", "RecipesBase", "SparseArrays"] -git-tree-sha1 = "1169632f425f79429f245113b775a0e3d121457c" -uuid = "42fd0dbc-a981-5370-80f2-aaf504508153" -version = "0.9.2" +version = "1.10.0" [[deps.IteratorInterfaceExtensions]] git-tree-sha1 = "a3f24677c21f5bbe9d2a714f95dcd58337fb2856" uuid = "82899510-4779-5014-852e-03e436cf321d" version = "1.0.0" +[[deps.JLFzf]] +deps = ["Pipe", "REPL", "Random", "fzf_jll"] +git-tree-sha1 = "71b48d857e86bf7a1838c4736545699974ce79a2" +uuid = "1019f520-868f-41f5-a6de-eb00f4b6a39c" +version = "0.1.9" + [[deps.JLLWrappers]] -deps = ["Preferences"] -git-tree-sha1 = "abc9885a7ca2052a736a600f7fa66209f96506e1" +deps = ["Artifacts", "Preferences"] +git-tree-sha1 = "a007feb38b422fbdab534406aeca1b86823cb4d6" uuid = "692b3bcd-3c85-4b1f-b108-f13ce0eb3210" -version = "1.4.1" +version = "1.7.0" [[deps.JSON]] deps = ["Dates", "Mmap", "Parsers", "Unicode"] -git-tree-sha1 = "3c837543ddb02250ef42f4738347454f95079d4e" +git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" -version = "0.21.3" +version = "0.21.4" [[deps.JpegTurbo_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b53380851c6e6664204efb2e62cd24fa5c47e4ba" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" uuid = "aacddb02-875f-59d6-b918-886e6ef4fbf8" -version = "2.1.2+0" +version = "3.1.1+0" [[deps.JuliaFormatter]] -deps = ["CSTParser", "CommonMark", "DataStructures", "Pkg", "Tokenize"] -git-tree-sha1 = "bc360182bf55b82cf15efb1cbc1b3607d05e1648" +deps = ["CSTParser", "CommonMark", "DataStructures", "Glob", "PrecompileTools", "TOML", "Tokenize"] +git-tree-sha1 = "59cf7ad64f1b0708a4fa4369879d33bad3239b56" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" -version = "1.0.9" +version = "1.0.62" [[deps.JuliaVariables]] deps = ["MLStyle", "NameResolution"] @@ -851,81 +1123,128 @@ uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" version = "0.2.4" [[deps.JumpProcesses]] -deps = ["ArrayInterfaceCore", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "TreeViews", "UnPack"] -git-tree-sha1 = "065462b4dcf2ca4de9701cc86e20f24570ae4bac" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] +git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.1.0" +version = "9.10.1" +weakdeps = ["FastBroadcast"] + + [deps.JumpProcesses.extensions] + JumpProcessFastBroadcastExt = "FastBroadcast" [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "cae5e3dfd89b209e01bcd65b3a25e74462c67ee0" +git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.3.0" +version = "0.4.1" + +[[deps.KernelAbstractions]] +deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] +git-tree-sha1 = "b9a838cd3028785ac23822cded5126b3da394d1a" +uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" +version = "0.9.31" + + [deps.KernelAbstractions.extensions] + EnzymeExt = "EnzymeCore" + LinearAlgebraExt = "LinearAlgebra" + SparseArraysExt = "SparseArrays" + + [deps.KernelAbstractions.weakdeps] + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + +[[deps.KernelDensity]] +deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] +git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" +uuid = "5ab0869b-81aa-558d-bb23-cbf5423bbe9b" +version = "0.6.9" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "a2327039e1c84615e22d662adb3df113caf44b70" +git-tree-sha1 = "d1c697c53d3041a371c1da21305d0dc9259dbc8a" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.8.3" - -[[deps.KrylovKit]] -deps = ["LinearAlgebra", "Printf"] -git-tree-sha1 = "49b0c1dd5c292870577b8f58c51072bd558febb9" -uuid = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" -version = "0.5.4" +version = "0.9.9" [[deps.LAME_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "f6250b16881adf048549549fba48b1161acdac8c" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" -version = "3.100.1+0" +version = "3.100.2+0" [[deps.LERC_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "bf36f528eec6634efc60d7ec062008f171071434" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" uuid = "88015f11-f218-50d7-93a8-a6af411a945d" -version = "3.0.0+1" +version = "4.0.1+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Printf", "Unicode"] -git-tree-sha1 = "e7e9184b0bf0158ac4e4aa9daf00041b5909bf1a" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] +git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "4.14.0" +version = "6.6.3" + + [deps.LLVM.extensions] + BFloat16sExt = "BFloat16s" + + [deps.LLVM.weakdeps] + BFloat16s = "ab4f0b2a-ad5b-11e8-123f-65d77653426b" [[deps.LLVMExtra_jll]] -deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "Pkg", "TOML"] -git-tree-sha1 = "771bfe376249626d3ca12bcd58ba243d3f961576" +deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] +git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.16+0" +version = "0.0.29+0" + +[[deps.LLVMOpenMP_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "78211fb6cbc872f77cad3fc0b6cf647d923f4929" +uuid = "1d63c593-3942-5779-bab2-d838dc0a180e" +version = "18.1.7+0" [[deps.LZO_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e5b909bcf985c5e2605737d2ce278ed791b89be6" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" -version = "2.10.1+0" +version = "2.10.3+0" [[deps.LaTeXStrings]] -git-tree-sha1 = "f2355693d6778a178ade15952b7ac47a4ff97996" +git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" -version = "1.3.0" +version = "1.4.0" [[deps.LabelledArrays]] -deps = ["ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "ChainRulesCore", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "b86aeff13358dfef82efd9f66a9d44705c9a4746" +deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] +git-tree-sha1 = "d1f981fba6eb3ec393eede4821bca3f2b7592cd4" uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.11.1" +version = "1.15.1" + +[[deps.LambertW]] +git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" +uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" +version = "0.4.6" [[deps.Latexify]] -deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "Printf", "Requires"] -git-tree-sha1 = "1a43be956d433b5d0321197150c2f94e16c0aaa0" +deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] +git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.15.16" +version = "0.16.5" + + [deps.Latexify.extensions] + DataFramesExt = "DataFrames" + SparseArraysExt = "SparseArrays" + SymEngineExt = "SymEngine" + + [deps.Latexify.weakdeps] + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" [[deps.LatinHypercubeSampling]] deps = ["Random", "StableRNGs", "StatsBase", "Test"] -git-tree-sha1 = "42938ab65e9ed3c3029a8d2c58382ca75bdab243" +git-tree-sha1 = "825289d43c753c7f1bf9bed334c253e9913997f8" uuid = "a5e1c1ea-c99a-51d3-a14d-a9a37257b02d" -version = "1.8.0" +version = "1.9.0" [[deps.LatticeRules]] deps = ["Random"] @@ -934,15 +1253,21 @@ uuid = "73f95e8e-ec14-4e6a-8b18-0d2e271c4e55" version = "0.0.1" [[deps.LayoutPointers]] -deps = ["ArrayInterface", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static"] -git-tree-sha1 = "b67e749fb35530979839e7b4b606a97105fe4f1c" +deps = ["ArrayInterface", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" -version = "0.1.10" +version = "0.1.17" [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" +[[deps.LeftChildRightSiblingTrees]] +deps = ["AbstractTrees"] +git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" +uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" +version = "0.2.0" + [[deps.LevyArea]] deps = ["LinearAlgebra", "Random", "SpecialFunctions"] git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" @@ -952,129 +1277,307 @@ version = "1.0.0" [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" +version = "0.6.4" [[deps.LibCURL_jll]] deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll", "Zlib_jll", "nghttp2_jll"] uuid = "deac9b47-8bc7-5906-a0fe-35ac56dc84c0" +version = "8.4.0+0" [[deps.LibGit2]] -deps = ["Base64", "NetworkOptions", "Printf", "SHA"] +deps = ["Base64", "LibGit2_jll", "NetworkOptions", "Printf", "SHA"] uuid = "76f85450-5226-5b5a-8eaa-529ad045b433" +[[deps.LibGit2_jll]] +deps = ["Artifacts", "LibSSH2_jll", "Libdl", "MbedTLS_jll"] +uuid = "e37daf67-58a4-590a-8e99-b0245dd2ffc5" +version = "1.6.4+0" + [[deps.LibSSH2_jll]] deps = ["Artifacts", "Libdl", "MbedTLS_jll"] uuid = "29816b5a-b9ab-546f-933c-edad1886dfa8" +version = "1.11.0+1" [[deps.Libdl]] uuid = "8f399da3-3557-5675-b5ff-fb832c97cbdb" [[deps.Libffi_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "0b4a5d71f3e5200a7dff793393e09dfc2d874290" +git-tree-sha1 = "27ecae93dd25ee0909666e6835051dd684cc035e" uuid = "e9f186c6-92d2-5b65-8a66-fee21dc1b490" -version = "3.2.2+1" +version = "3.2.2+2" [[deps.Libgcrypt_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll", "Pkg"] -git-tree-sha1 = "64613c82a59c120435c067c2b809fc61cf5166ae" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgpg_error_jll"] +git-tree-sha1 = "8be878062e0ffa2c3f67bb58a595375eda5de80b" uuid = "d4300ac3-e22c-5743-9152-c294e39db1e4" -version = "1.8.7+0" +version = "1.11.0+0" [[deps.Libglvnd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll", "Xorg_libXext_jll"] -git-tree-sha1 = "7739f837d6447403596a75d19ed01fd08d6f56bf" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll", "Xorg_libXext_jll"] +git-tree-sha1 = "ff3b4b9d35de638936a525ecd36e86a8bb919d11" uuid = "7e76a0d4-f3c7-5321-8279-8d96eeed0f29" -version = "1.3.0+3" +version = "1.7.0+0" [[deps.Libgpg_error_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "c333716e46366857753e273ce6a69ee0945a6db9" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "df37206100d39f79b3376afb6b9cee4970041c61" uuid = "7add5ba3-2f88-524e-9cd5-f83b8a55f7b8" -version = "1.42.0+0" +version = "1.51.1+0" [[deps.Libiconv_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "42b62845d70a619f063a7da093d995ec8e15e778" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "be484f5c92fad0bd8acfef35fe017900b0b73809" uuid = "94ce4f54-9a6c-5748-9c1c-f9c7231a4531" -version = "1.16.1+1" +version = "1.18.0+0" [[deps.Libmount_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "9c30530bf0effd46e15e0fdcf2b8636e78cbbd73" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "89211ea35d9df5831fca5d33552c02bd33878419" uuid = "4b2f31a3-9ecc-558c-b454-b3730dcb73e9" -version = "2.35.0+0" +version = "2.40.3+0" [[deps.Libtiff_jll]] -deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "Pkg", "Zlib_jll", "Zstd_jll"] -git-tree-sha1 = "3eb79b0ca5764d4799c06699573fd8f533259713" +deps = ["Artifacts", "JLLWrappers", "JpegTurbo_jll", "LERC_jll", "Libdl", "XZ_jll", "Zlib_jll", "Zstd_jll"] +git-tree-sha1 = "4ab7581296671007fc33f07a721631b8855f4b1d" uuid = "89763e89-9b03-5906-acba-b20f662cd828" -version = "4.4.0+0" +version = "4.7.1+0" [[deps.Libuuid_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "7f3efec06033682db852f8b3bc3c1d2b0a0ab066" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" -version = "2.36.0+0" +version = "2.40.3+0" [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] -git-tree-sha1 = "f27132e551e959b3667d8c93eae90973225032dd" +git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" uuid = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" -version = "7.1.1" +version = "7.3.0" [[deps.LinearAlgebra]] -deps = ["Libdl", "libblastrampoline_jll"] +deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterfaceCore", "DocStringExtensions", "FastLapackInterface", "GPUArraysCore", "IterativeSolvers", "KLU", "Krylov", "KrylovKit", "LinearAlgebra", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "SparseArrays", "SuiteSparse", "UnPack"] -git-tree-sha1 = "95fe0ce60a1d473c00a378573370781140933f33" +deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] +git-tree-sha1 = "deb3a7f3dd520fb90e38c4d77fc1b41ee4e68f68" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "1.23.2" +version = "2.7.0" + + [deps.LinearSolve.extensions] + LinearSolveBlockDiagonalsExt = "BlockDiagonals" + LinearSolveCUDAExt = "CUDA" + LinearSolveHYPREExt = "HYPRE" + LinearSolveIterativeSolversExt = "IterativeSolvers" + LinearSolveKernelAbstractionsExt = "KernelAbstractions" + LinearSolveKrylovKitExt = "KrylovKit" + LinearSolveMKLExt = "MKL_jll" + LinearSolveMetalExt = "Metal" + LinearSolvePardisoExt = "Pardiso" + + [deps.LinearSolve.weakdeps] + BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" + IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" + KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" + MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + +[[deps.LogDensityProblems]] +deps = ["ArgCheck", "DocStringExtensions", "Random"] +git-tree-sha1 = "4e0128c1590d23a50dcdb106c7e2dbca99df85c0" +uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" +version = "2.1.2" + +[[deps.LogDensityProblemsAD]] +deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] +git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" +version = "1.9.0" + + [deps.LogDensityProblemsAD.extensions] + LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADEnzymeExt = "Enzyme" + LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" + LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] + LogDensityProblemsADForwardDiffExt = "ForwardDiff" + LogDensityProblemsADReverseDiffExt = "ReverseDiff" + LogDensityProblemsADTrackerExt = "Tracker" + LogDensityProblemsADZygoteExt = "Zygote" + + [deps.LogDensityProblemsAD.weakdeps] + ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" + BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LogExpFunctions]] -deps = ["ChainRulesCore", "ChangesOfVariables", "DocStringExtensions", "InverseFunctions", "IrrationalConstants", "LinearAlgebra"] -git-tree-sha1 = "361c2b088575b07946508f135ac556751240091c" +deps = ["DocStringExtensions", "IrrationalConstants", "LinearAlgebra"] +git-tree-sha1 = "13ca9e2586b89836fd20cccf56e57e2b9ae7f38f" uuid = "2ab3a3ac-af41-5b50-aa03-7779005ae688" -version = "0.3.17" +version = "0.3.29" + + [deps.LogExpFunctions.extensions] + LogExpFunctionsChainRulesCoreExt = "ChainRulesCore" + LogExpFunctionsChangesOfVariablesExt = "ChangesOfVariables" + LogExpFunctionsInverseFunctionsExt = "InverseFunctions" + + [deps.LogExpFunctions.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ChangesOfVariables = "9e997f8a-9a97-42d5-a9f1-ce6bfc15e2c0" + InverseFunctions = "3587e190-3f89-42d0-90ee-14403ec27112" [[deps.Logging]] uuid = "56ddb016-857b-54e1-b83d-db4d58db5568" [[deps.LoggingExtras]] deps = ["Dates", "Logging"] -git-tree-sha1 = "5d4d2d9904227b8bd66386c1138cf4d5ffa826bf" +git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" -version = "0.4.9" +version = "1.1.0" [[deps.LoopVectorization]] -deps = ["ArrayInterface", "ArrayInterfaceCore", "ArrayInterfaceOffsetArrays", "ArrayInterfaceStaticArrays", "CPUSummary", "ChainRulesCore", "CloseOpenIntervals", "DocStringExtensions", "ForwardDiff", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "SIMDDualNumbers", "SIMDTypes", "SLEEFPirates", "SnoopPrecompile", "SpecialFunctions", "Static", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "aa9beb2007b72cc6b3e36924d3532ac870762f9b" +deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] +git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.121" +version = "0.12.171" +weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] + + [deps.LoopVectorization.extensions] + ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] + SpecialFunctionsExt = "SpecialFunctions" [[deps.Lux]] -deps = ["Adapt", "CUDA", "ChainRulesCore", "ComponentArrays", "FillArrays", "Functors", "LinearAlgebra", "Markdown", "NNlib", "NNlibCUDA", "Optimisers", "Random", "Requires", "Setfield", "SparseArrays", "Statistics", "Zygote"] -git-tree-sha1 = "23d0996983f66642c63fa0d9d691784412bbcf4d" +deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "ConstructionBase", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxDeviceUtils", "LuxLib", "MacroTools", "Markdown", "Optimisers", "PrecompileTools", "Random", "Reexport", "Setfield", "SparseArrays", "Statistics", "TruncatedStacktraces", "WeightInitializers"] +git-tree-sha1 = "979b0437f42453b65175c6390314b2fd76eefbd4" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "0.4.14" +version = "0.5.16" + + [deps.Lux.extensions] + LuxChainRulesExt = "ChainRules" + LuxComponentArraysExt = "ComponentArrays" + LuxComponentArraysReverseDiffExt = ["ComponentArrays", "ReverseDiff"] + LuxFluxTransformExt = "Flux" + LuxLuxAMDGPUExt = "LuxAMDGPU" + LuxReverseDiffExt = "ReverseDiff" + LuxTrackerExt = "Tracker" + LuxZygoteExt = "Zygote" + + [deps.Lux.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" + LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LuxCore]] +deps = ["Compat", "DispatchDoctor", "Functors", "Random", "Setfield"] +git-tree-sha1 = "f1312b4295c21e8681f8661d9893fd3ba522d7c9" +uuid = "bb33d45b-7691-41d6-9220-0943567d0623" +version = "0.1.23" + + [deps.LuxCore.extensions] + LuxCoreChainRulesCoreExt = "ChainRulesCore" + LuxCoreEnzymeCoreExt = "EnzymeCore" + LuxCoreMLDataDevicesExt = "MLDataDevices" + + [deps.LuxCore.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" + +[[deps.LuxDeviceUtils]] +deps = ["Adapt", "ChainRulesCore", "Functors", "LuxCore", "Preferences", "Random", "SparseArrays"] +git-tree-sha1 = "cffc2222bf9dc01730f6fc904266f8056abb8e83" +uuid = "34f89e08-e1d5-43b4-8944-0b49ac560553" +version = "0.1.11" + + [deps.LuxDeviceUtils.extensions] + LuxDeviceUtilsFillArraysExt = "FillArrays" + LuxDeviceUtilsLuxAMDGPUExt = "LuxAMDGPU" + LuxDeviceUtilsLuxCUDAExt = "LuxCUDA" + LuxDeviceUtilsMetalExt = "Metal" + LuxDeviceUtilsZygoteExt = "Zygote" + + [deps.LuxDeviceUtils.weakdeps] + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" + LuxCUDA = "d0bbae9a-e099-4d5b-a835-1c6931763bda" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.LuxLib]] +deps = ["ChainRulesCore", "FastClosures", "KernelAbstractions", "LuxCore", "Markdown", "NNlib", "PrecompileTools", "Random", "Reexport", "Statistics"] +git-tree-sha1 = "b1f81a8aa8313c1f1b4cbfb18733db17c023427e" +uuid = "82251201-b29d-42c6-8e01-566dec8acb11" +version = "0.3.14" + + [deps.LuxLib.extensions] + LuxLibForwardDiffExt = "ForwardDiff" + LuxLibReverseDiffExt = "ReverseDiff" + LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] + LuxLibTrackerExt = "Tracker" + LuxLibTrackercuDNNExt = ["CUDA", "Tracker", "cuDNN"] + LuxLibcuDNNExt = ["CUDA", "cuDNN"] + + [deps.LuxLib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + +[[deps.MCMCChains]] +deps = ["AbstractMCMC", "AxisArrays", "Dates", "Distributions", "IteratorInterfaceExtensions", "KernelDensity", "LinearAlgebra", "MCMCDiagnosticTools", "MLJModelInterface", "NaturalSort", "OrderedCollections", "PrettyTables", "Random", "RecipesBase", "Statistics", "StatsBase", "StatsFuns", "TableTraits", "Tables"] +git-tree-sha1 = "cd7aee22384792c726e19f2a22dc060b886edded" +uuid = "c7f686f2-ff18-58e9-bc7b-31028e88f75d" +version = "6.0.7" + +[[deps.MCMCDiagnosticTools]] +deps = ["AbstractFFTs", "DataAPI", "DataStructures", "Distributions", "LinearAlgebra", "MLJModelInterface", "Random", "SpecialFunctions", "Statistics", "StatsBase", "StatsFuns", "Tables"] +git-tree-sha1 = "a586f05dd16a50c490ed95415b2a829b8cf5d57f" +uuid = "be115224-59cd-429b-ad48-344e309966f0" +version = "0.3.14" + +[[deps.MKL_jll]] +deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] +git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" +version = "2024.2.0+0" + +[[deps.MLJModelInterface]] +deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] +git-tree-sha1 = "ceaff6618408d0e412619321ae43b33b40c1a733" +uuid = "e80e1ace-859a-464e-9ed9-23947d8ae3ea" +version = "1.11.0" [[deps.MLStyle]] -git-tree-sha1 = "c4f433356372cc8838da59e3608be4b0c4c2c280" +git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" -version = "0.4.13" +version = "0.4.17" [[deps.MLUtils]] -deps = ["ChainRulesCore", "DelimitedFiles", "FLoops", "FoldsThreads", "Random", "ShowCases", "Statistics", "StatsBase", "Transducers"] -git-tree-sha1 = "7fd41b7edef1d58062a75c2f129e839a8d168fe9" +deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] +git-tree-sha1 = "7940c0af802586b97009f254aa6065000a16fa1d" uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.2.10" +version = "0.4.5" [[deps.MacroTools]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "3d3e902b31198a27340d0bf00d6ac452866021cf" +git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" -version = "0.5.9" +version = "0.5.15" [[deps.ManualMemory]] git-tree-sha1 = "bcaef4fc7a0cfe2cba636d84cda54b5e4e4ca3cd" @@ -1086,46 +1589,47 @@ deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" [[deps.MbedTLS]] -deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "Random", "Sockets"] -git-tree-sha1 = "d9ab10da9de748859a7780338e1d6566993d1f25" +deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] +git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" uuid = "739be429-bea8-5141-9913-cc70e7f3736d" -version = "1.1.3" +version = "1.1.9" [[deps.MbedTLS_jll]] deps = ["Artifacts", "Libdl"] uuid = "c8ffd9c3-330d-5841-b78e-0817d7145fa1" +version = "2.28.2+1" [[deps.Measures]] -git-tree-sha1 = "e498ddeee6f9fdb4551ce855a46f54dbd900245f" +git-tree-sha1 = "c13304c81eec1ed3af7fc20e75fb6b26092a1102" uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" -version = "0.3.1" - -[[deps.Metatheory]] -deps = ["AutoHashEquals", "DataStructures", "Dates", "DocStringExtensions", "Parameters", "Reexport", "TermInterface", "ThreadsX", "TimerOutputs"] -git-tree-sha1 = "a160e323d3684889e6026914576f1f4288de131d" -uuid = "e9d8d322-4543-424a-9be4-0cc815abe26c" -version = "1.3.4" +version = "0.3.2" [[deps.MicroCollections]] deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "6bb7786e4f24d44b4e29df03c69add1b63d88f01" +git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.2" +version = "0.1.4" [[deps.Missings]] deps = ["DataAPI"] -git-tree-sha1 = "bf210ce90b6c9eed32d25dbcae1ebc565df2687f" +git-tree-sha1 = "ec4f7fbeab05d7747bdf98eb74d130a2a2ed298d" uuid = "e1d29d7a-bbdc-5cf2-9ac0-f12de2c33e28" -version = "1.0.2" +version = "1.2.0" [[deps.Mmap]] uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterfaceCore", "Combinatorics", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "NaNMath", "NonlinearSolve", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "Symbolics", "UnPack", "Unitful"] -git-tree-sha1 = "010c9e4b4e120050aa677125b65705cf896c0d51" +deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "MacroTools", "NaNMath", "OrdinaryDiffEq", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "87a45c453295c1640a1fd011a85e42fda7a78d15" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "8.18.7" +version = "8.70.0" + + [deps.ModelingToolkit.extensions] + MTKDeepDiffsExt = "DeepDiffs" + + [deps.ModelingToolkit.weakdeps] + DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" [[deps.MonteCarloIntegration]] deps = ["Distributions", "Random"] @@ -1133,37 +1637,58 @@ git-tree-sha1 = "3f78ebce296c927d5c854e83cccdb5dcb1845629" uuid = "4886b29c-78c9-11e9-0a6e-41e1f4161f7b" version = "0.0.3" +[[deps.MonteCarloMeasurements]] +deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] +git-tree-sha1 = "ccd04096ea75caef68aa1ac72588e08f1f90f863" +uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" +version = "1.4.0" + + [deps.MonteCarloMeasurements.extensions] + ForwardDiffExt = "ForwardDiff" + MakieExt = "Makie" + MeasurementsExt = "Measurements" + RecipesBaseExt = "RecipesBase" + UnitfulExt = "Unitful" + + [deps.MonteCarloMeasurements.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" + [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" +version = "2023.1.10" [[deps.MuladdMacro]] -git-tree-sha1 = "c6190f9a7fc5d9d5915ab29f2134421b12d24a68" +git-tree-sha1 = "cac9cc5499c25554cba55cd3c30543cff5ca4fab" uuid = "46d2c3a1-f734-5fdb-9937-b9b9aeba4221" -version = "0.2.2" +version = "0.2.4" [[deps.MultivariatePolynomials]] deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"] -git-tree-sha1 = "393fc4d82a73c6fe0e2963dd7c882b09257be537" +git-tree-sha1 = "8d39779e29f80aa6c071e7ac17101c6e31f075d7" uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3" -version = "0.4.6" +version = "0.5.7" [[deps.Mustache]] deps = ["Printf", "Tables"] -git-tree-sha1 = "1e566ae913a57d0062ff1af54d2697b9344b99cd" +git-tree-sha1 = "3b2db451a872b20519ebb0cec759d3d81a1c6bcb" uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70" -version = "1.0.14" +version = "1.0.20" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "4e675d6e9ec02061800d6cfb695812becbd03cdf" +git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.0.4" +version = "1.6.2" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] -git-tree-sha1 = "50310f934e55e5ca3912fb941dec199b49ca9b68" +git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" -version = "7.8.2" +version = "7.8.3" [[deps.NLsolve]] deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] @@ -1172,21 +1697,32 @@ uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" version = "4.5.1" [[deps.NNlib]] -deps = ["Adapt", "ChainRulesCore", "LinearAlgebra", "Pkg", "Requires", "Statistics"] -git-tree-sha1 = "415108fd88d6f55cedf7ee940c7d4b01fad85421" +deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "bdc9d30f151590aca0af22690f5ab7dc18a551cb" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.8.9" - -[[deps.NNlibCUDA]] -deps = ["Adapt", "CUDA", "LinearAlgebra", "NNlib", "Random", "Statistics"] -git-tree-sha1 = "4429261364c5ea5b7308aecaa10e803ace101631" -uuid = "a00861dc-f156-4864-bf3c-e6376f28a68d" -version = "0.2.4" +version = "0.9.27" + + [deps.NNlib.extensions] + NNlibAMDGPUExt = "AMDGPU" + NNlibCUDACUDNNExt = ["CUDA", "cuDNN"] + NNlibCUDAExt = "CUDA" + NNlibEnzymeCoreExt = "EnzymeCore" + NNlibFFTWExt = "FFTW" + NNlibForwardDiffExt = "ForwardDiff" + + [deps.NNlib.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.NaNMath]] -git-tree-sha1 = "b086b7ea07f8e38cf122f5016af580881ac914fe" +deps = ["OpenLibm_jll"] +git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "0.3.7" +version = "1.0.3" [[deps.NameResolution]] deps = ["PrettyPrint"] @@ -1194,26 +1730,35 @@ git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" version = "0.1.5" +[[deps.NaturalSort]] +git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" +uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" +version = "1.0.0" + [[deps.NetworkOptions]] uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" +version = "1.2.0" [[deps.NeuralPDE]] -deps = ["Adapt", "ArrayInterfaceCore", "ChainRulesCore", "ComponentArrays", "DiffEqBase", "DiffEqNoiseProcess", "Distributions", "DocStringExtensions", "DomainSets", "Flux", "ForwardDiff", "Integrals", "IntegralsCubature", "LinearAlgebra", "Lux", "ModelingToolkit", "Optim", "Optimisers", "Optimization", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "StochasticDiffEq", "SymbolicUtils", "Symbolics", "UnPack", "Zygote"] -git-tree-sha1 = "1d9848beca906e7c773dd1ada5a1726691718b2e" +deps = ["Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "DiffEqBase", "DiffEqNoiseProcess", "Distributions", "DocStringExtensions", "DomainSets", "Flux", "ForwardDiff", "Functors", "Integrals", "IntegralsCubature", "LinearAlgebra", "LogDensityProblems", "Lux", "MCMCChains", "ModelingToolkit", "MonteCarloMeasurements", "Optim", "Optimisers", "Optimization", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "StochasticDiffEq", "SymbolicUtils", "Symbolics", "UnPack", "Zygote"] +git-tree-sha1 = "901fc1818af7c0bd12712f8532d324f27ef6d3e6" uuid = "315f7962-48a3-4962-8226-d0f33b1235f0" -version = "5.0.0" +version = "5.9.0" [[deps.NonlinearSolve]] -deps = ["ArrayInterfaceCore", "FiniteDiff", "ForwardDiff", "IterativeSolvers", "LinearAlgebra", "RecursiveArrayTools", "RecursiveFactorization", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "UnPack"] -git-tree-sha1 = "a754a21521c0ab48d37f44bbac1eefd1387bdcfc" +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "445a7ba86794e1f8ee9da3b3b7becf284e2625fd" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "0.3.22" +version = "2.1.0" [[deps.OffsetArrays]] -deps = ["Adapt"] -git-tree-sha1 = "1ea784113a6aa054c5ebd95945fa5e52c2f378e7" +git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c" uuid = "6fe1bfb0-de20-5000-8ca7-80f57d26f881" -version = "1.12.7" +version = "1.15.0" +weakdeps = ["Adapt"] + + [deps.OffsetArrays.extensions] + OffsetArraysAdaptExt = "Adapt" [[deps.Ogg_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -1221,88 +1766,136 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" +[[deps.OneHotArrays]] +deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] +git-tree-sha1 = "c8c7f6bfabe581dc40b580313a75f1ecce087e27" +uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" +version = "0.2.6" + [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" +version = "0.3.23+4" [[deps.OpenLibm_jll]] deps = ["Artifacts", "Libdl"] uuid = "05823500-19ac-5b8b-9628-191a04bc5112" +version = "0.8.1+2" + +[[deps.OpenSSL]] +deps = ["BitFlags", "Dates", "MozillaCACerts_jll", "OpenSSL_jll", "Sockets"] +git-tree-sha1 = "38cb508d080d21dc1128f7fb04f20387ed4c0af4" +uuid = "4d8831e6-92b7-49fb-bdf8-b643e874388c" +version = "1.4.3" [[deps.OpenSSL_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e60321e3f2616584ff98f0a4f18d98ae6f89bbb3" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "1.1.17+0" +version = "3.0.15+3" [[deps.OpenSpecFun_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "13652491f6856acfd2db29360e1bbcd4565d04f1" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1346c9208249809840c91b26703912dff463d335" uuid = "efe28fd5-8261-553b-a9e1-b2916fc3738e" -version = "0.5.5+0" +version = "0.5.6+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "7351d1daa3dad1bcf67c79d1ba34dd3f6136c9aa" +git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.7.1" +version = "1.10.0" + + [deps.Optim.extensions] + OptimMOIExt = "MathOptInterface" + + [deps.Optim.weakdeps] + MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.Optimisers]] deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "62844c5525c3f13b3107aa2c25a06208ecadde88" +git-tree-sha1 = "c9ff5c686240c31eb8570b662dd1f66f4b183116" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.2.8" +version = "0.3.4" [[deps.Optimization]] -deps = ["ArrayInterfaceCore", "ConsoleProgressMonitor", "DiffResults", "DocStringExtensions", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "f2dbe632d3aad1fb1e5ee7dbbeb4896aabb39da1" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.8.2" - -[[deps.OptimizationFlux]] -deps = ["Flux", "Optimization", "Printf", "ProgressLogging", "Reexport"] -git-tree-sha1 = "a2eb4ec758a38ce82ace42b806d341ac0457b604" -uuid = "253f991c-a7b2-45f8-8852-8b9a9df78a86" -version = "0.1.0" +version = "3.19.3" + + [deps.Optimization.extensions] + OptimizationEnzymeExt = "Enzyme" + OptimizationFiniteDiffExt = "FiniteDiff" + OptimizationForwardDiffExt = "ForwardDiff" + OptimizationMTKExt = "ModelingToolkit" + OptimizationReverseDiffExt = "ReverseDiff" + OptimizationSparseDiffExt = ["SparseDiffTools", "Symbolics", "ReverseDiff"] + OptimizationTrackerExt = "Tracker" + OptimizationZygoteExt = "Zygote" + + [deps.Optimization.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.OptimizationOptimJL]] deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "76ac41f9e82ba98a600d8a380532adef76b27e15" +git-tree-sha1 = "bea24fb320d58cb639e3cbc63f8eedde6c667bd3" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.2" +version = "0.1.14" + +[[deps.OptimizationOptimisers]] +deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"] +git-tree-sha1 = "69143c5e9b1533e9eab8d64cfe7813dfaf66c521" +uuid = "42dfb2eb-d2b4-4451-abcd-913932933ac1" +version = "0.1.6" [[deps.Opus_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "51a08fb14ec28da2ec7a927c4337e4332c2a4720" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6703a85cb3781bd5909d48730a67205f3f31a575" uuid = "91d4177d-7536-5919-b921-800302f37372" -version = "1.3.2+0" +version = "1.3.3+0" [[deps.OrderedCollections]] -git-tree-sha1 = "85f8e6578bf1f9ee0d11e7bb1b1456435479d47c" +git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.4.1" +version = "1.7.0" [[deps.OrdinaryDiffEq]] -deps = ["Adapt", "ArrayInterface", "ArrayInterfaceGPUArrays", "ArrayInterfaceStaticArrays", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "6be470b4eb54a4f7c46bc3e0c7bd77f9113d787f" +deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] +git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.20.0" +version = "6.58.2" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" - -[[deps.PCRE_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b2a7af664e098055a7529ad1a900ded962bca488" -uuid = "2f80f16e-611a-54ab-bc61-aa92de5b98fc" -version = "8.44.0+0" +version = "10.42.0+1" [[deps.PDMats]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "cf494dca75a69712a72b80bc48f59dcf3dea63ec" +git-tree-sha1 = "966b85253e959ea89c53a9abebbf2e964fbf593b" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" -version = "0.11.16" +version = "0.11.32" + +[[deps.PackageExtensionCompat]] +git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" +uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" +version = "1.0.2" +weakdeps = ["Requires", "TOML"] + +[[deps.Pango_jll]] +deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] +git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" +uuid = "36c8627f-9965-5494-a995-c6b170f724f3" +version = "1.55.5+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -1311,56 +1904,82 @@ uuid = "d96e819e-fc66-5662-9728-84c9c7592b0a" version = "0.12.3" [[deps.Parsers]] -deps = ["Dates"] -git-tree-sha1 = "0044b23da09b5608b4ecacb4e5e6c6332f833a7e" +deps = ["Dates", "PrecompileTools", "UUIDs"] +git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" -version = "2.3.2" +version = "2.8.1" + +[[deps.PartialFunctions]] +deps = ["MacroTools"] +git-tree-sha1 = "47b49a4dbc23b76682205c646252c0f9e1eb75af" +uuid = "570af359-4316-4cb7-8c74-252c00c2016b" +version = "1.2.0" + +[[deps.Pipe]] +git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" +uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" +version = "1.3.0" [[deps.Pixman_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "b4f5d02549a10e20780a24fce72bea96b6329e29" +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "LLVMOpenMP_jll", "Libdl"] +git-tree-sha1 = "35621f10a7531bc8fa58f74610b1bfb70a3cfc6b" uuid = "30392449-352a-5448-841d-b1acce4e97dc" -version = "0.40.1+0" +version = "0.43.4+0" [[deps.Pkg]] -deps = ["Artifacts", "Dates", "Downloads", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] +deps = ["Artifacts", "Dates", "Downloads", "FileWatching", "LibGit2", "Libdl", "Logging", "Markdown", "Printf", "REPL", "Random", "SHA", "Serialization", "TOML", "Tar", "UUIDs", "p7zip_jll"] uuid = "44cfe95a-1eb2-52ea-b672-e2afdf69b78f" +version = "1.10.0" [[deps.PlotThemes]] deps = ["PlotUtils", "Statistics"] -git-tree-sha1 = "8162b2f8547bc23876edd0c5181b27702ae58dce" +git-tree-sha1 = "41031ef3a1be6f5bbbf3e8073f210556daeae5ca" uuid = "ccf2f8ad-2431-5c83-bf29-c5338b663b6a" -version = "3.0.0" +version = "3.3.0" [[deps.PlotUtils]] -deps = ["ColorSchemes", "Colors", "Dates", "Printf", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "9888e59493658e476d3073f1ce24348bdc086660" +deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "StableRNGs", "Statistics"] +git-tree-sha1 = "3ca9a356cd2e113c420f2c13bea19f8d3fb1cb18" uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043" -version = "1.3.0" +version = "1.4.3" [[deps.Plots]] -deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "GeometryBasics", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "Unzip"] -git-tree-sha1 = "79830c17fe30f234931767238c584b3a75b3329d" +deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "TOML", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"] +git-tree-sha1 = "dae01f8c2e069a683d3a6e17bbae5070ab94786f" uuid = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" -version = "1.31.6" +version = "1.40.9" + + [deps.Plots.extensions] + FileIOExt = "FileIO" + GeometryBasicsExt = "GeometryBasics" + IJuliaExt = "IJulia" + ImageInTerminalExt = "ImageInTerminal" + UnitfulExt = "Unitful" + + [deps.Plots.weakdeps] + FileIO = "5789e2e9-d7fb-5bc7-8068-2c6fae9b9549" + GeometryBasics = "5c1252a2-5f33-56bf-86c9-59e7332b4326" + IJulia = "7073ff75-c697-5162-941a-fcdaad2a7d2a" + ImageInTerminal = "d8c32880-2388-543b-8c61-d9f865259254" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.PoissonRandom]] deps = ["Random"] -git-tree-sha1 = "9ac1bb7c15c39620685a3a7babc0651f5c64c35b" +git-tree-sha1 = "a0f1159c33f846aa77c3f30ebbc69795e5327152" uuid = "e409e4f3-bfea-5376-8464-e040bb5c01ab" -version = "0.4.1" +version = "0.4.4" [[deps.Polyester]] -deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Requires", "Static", "StrideArraysCore", "ThreadingUtilities"] -git-tree-sha1 = "94e20822bd7427b1b1b843a3980003f5d5e8696b" +deps = ["ArrayInterface", "BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "ManualMemory", "PolyesterWeave", "Static", "StaticArrayInterface", "StrideArraysCore", "ThreadingUtilities"] +git-tree-sha1 = "6d38fea02d983051776a856b7df75b30cf9a3c1f" uuid = "f517fe37-dbe3-4b94-8317-1923a5111588" -version = "0.6.14" +version = "0.7.16" [[deps.PolyesterWeave]] deps = ["BitTwiddlingConvenienceFunctions", "CPUSummary", "IfElse", "Static", "ThreadingUtilities"] -git-tree-sha1 = "cf8155767df6ec8fd21b49e81ec8a8099e1a5f96" +git-tree-sha1 = "645bed98cd47f72f67316fd42fc47dee771aefcd" uuid = "1d0040c9-8b98-4ee7-8388-3f51789ca0ad" -version = "0.1.8" +version = "0.2.2" [[deps.PositiveFactorizations]] deps = ["LinearAlgebra"] @@ -1369,27 +1988,45 @@ uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" [[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ForwardDiff"] -git-tree-sha1 = "ba66bf03b84ca3bd0a26aa2bbe96cd9df2f4f9b9" +deps = ["Adapt", "ArrayInterface", "ForwardDiff"] +git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.0" +version = "0.4.24" + + [deps.PreallocationTools.extensions] + PreallocationToolsReverseDiffExt = "ReverseDiff" + + [deps.PreallocationTools.weakdeps] + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + +[[deps.PrecompileTools]] +deps = ["Preferences"] +git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" +uuid = "aea7be01-6a6a-4083-8856-8a6e6704d82a" +version = "1.2.1" [[deps.Preferences]] deps = ["TOML"] -git-tree-sha1 = "47e5f437cc0e7ef2ce8406ce1e7e24d44915f88d" +git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" -version = "1.3.0" +version = "1.4.3" [[deps.PrettyPrint]] git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" version = "0.2.0" +[[deps.PrettyTables]] +deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] +git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" +uuid = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d" +version = "2.4.0" + [[deps.Primes]] deps = ["IntegerMathUtils"] -git-tree-sha1 = "311a2aa90a64076ea0fac2ad7492e914e6feeb81" +git-tree-sha1 = "cb420f77dc474d23ee47ca8d14c90810cafe69e7" uuid = "27ebfcd6-29c5-5fa9-bf4b-fb8fc14df3ae" -version = "0.5.3" +version = "0.5.6" [[deps.Printf]] deps = ["Unicode"] @@ -1403,53 +2040,97 @@ version = "0.1.4" [[deps.ProgressMeter]] deps = ["Distributed", "Printf"] -git-tree-sha1 = "d7a7aef8f8f2d537104f170139553b14dfe39fe9" +git-tree-sha1 = "8f6bc219586aef8baf0ff9a5fe16ee9c70cb65e4" uuid = "92933f4c-e287-5a05-a399-4b506db050ca" -version = "1.7.2" +version = "1.10.2" + +[[deps.PtrArrays]] +git-tree-sha1 = "1d36ef11a9aaf1e8b74dacc6a731dd1de8fd493d" +uuid = "43287f4e-b6f4-7ad1-bb20-aadabca52c3d" +version = "1.3.0" -[[deps.Qt5Base_jll]] -deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Pkg", "Xorg_libXext_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "xkbcommon_jll"] -git-tree-sha1 = "c6c0f690d0cc7caddb74cef7aa847b824a16b256" -uuid = "ea2cea3b-5b76-57ae-a6ef-0a8af62496e1" -version = "5.15.3+1" +[[deps.Qt6Base_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "Fontconfig_jll", "Glib_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "OpenSSL_jll", "Vulkan_Loader_jll", "Xorg_libSM_jll", "Xorg_libXext_jll", "Xorg_libXrender_jll", "Xorg_libxcb_jll", "Xorg_xcb_util_cursor_jll", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_keysyms_jll", "Xorg_xcb_util_renderutil_jll", "Xorg_xcb_util_wm_jll", "Zlib_jll", "libinput_jll", "xkbcommon_jll"] +git-tree-sha1 = "492601870742dcd38f233b23c3ec629628c1d724" +uuid = "c0090381-4147-56d7-9ebc-da0b1113ec56" +version = "6.7.1+1" + +[[deps.Qt6Declarative_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6ShaderTools_jll"] +git-tree-sha1 = "e5dd466bf2569fe08c91a2cc29c1003f4797ac3b" +uuid = "629bc702-f1f5-5709-abd5-49b8460ea067" +version = "6.7.1+2" + +[[deps.Qt6ShaderTools_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll"] +git-tree-sha1 = "1a180aeced866700d4bebc3120ea1451201f16bc" +uuid = "ce943373-25bb-56aa-8eca-768745ed7b5a" +version = "6.7.1+1" + +[[deps.Qt6Wayland_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Qt6Base_jll", "Qt6Declarative_jll"] +git-tree-sha1 = "729927532d48cf79f49070341e1d918a65aba6b0" +uuid = "e99dba38-086e-5de3-a5b1-6e4c66e897c3" +version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "78aadffb3efd2155af139781b8a8df1ef279ea39" +git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.4.2" +version = "2.11.1" + + [deps.QuadGK.extensions] + QuadGKEnzymeExt = "Enzyme" + + [deps.QuadGK.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.QuasiMonteCarlo]] -deps = ["Distributions", "LatinHypercubeSampling", "LatticeRules", "Sobol"] -git-tree-sha1 = "3c4082632b3eddac3eaa7e1d476637101a5e76c5" +deps = ["Distributions", "LatinHypercubeSampling", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Sobol", "StatsBase"] +git-tree-sha1 = "b10f1a5345f14f6431712661925ae2d8c02780ee" uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.2.9" +version = "0.2.19" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] uuid = "3fa0cd96-eef1-5676-8a61-b3b8758bbffb" [[deps.Random]] -deps = ["SHA", "Serialization"] +deps = ["SHA"] uuid = "9a3f8284-a2c9-5f02-9a11-845980a1fd5c" [[deps.Random123]] deps = ["Random", "RandomNumbers"] -git-tree-sha1 = "7a1a306b72cfa60634f03a911405f4e64d1b718b" +git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" -version = "1.6.0" +version = "1.7.0" [[deps.RandomExtensions]] deps = ["Random", "SparseArrays"] -git-tree-sha1 = "062986376ce6d394b23d5d90f01d81426113a3c9" +git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49" uuid = "fb686558-2515-59ef-acaa-46db3789a887" -version = "0.4.3" +version = "0.4.4" [[deps.RandomNumbers]] -deps = ["Random", "Requires"] -git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111" +deps = ["Random"] +git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" uuid = "e6cf234a-135c-5ec9-84dd-332b85af5143" -version = "1.5.3" +version = "1.6.0" + +[[deps.RangeArrays]] +git-tree-sha1 = "b9039e93773ddcfc828f12aadf7115b4b4d225f5" +uuid = "b3c3ace0-ae52-54e7-9d0b-2c1406fd6b9d" +version = "0.3.2" + +[[deps.Ratios]] +deps = ["Requires"] +git-tree-sha1 = "1342a47bf3260ee108163042310d26f2be5ec90b" +uuid = "c84ed2f1-dad5-54f0-aa8e-dbefe2724439" +version = "0.4.5" +weakdeps = ["FixedPointNumbers"] + + [deps.Ratios.extensions] + RatiosFixedPointNumbersExt = "FixedPointNumbers" [[deps.RealDot]] deps = ["LinearAlgebra"] @@ -1458,44 +2139,51 @@ uuid = "c1ae055f-0cd5-4b69-90a6-9a35b1a98df9" version = "0.1.0" [[deps.RecipesBase]] -git-tree-sha1 = "6bf3f380ff52ce0832ddd3a2a7b9538ed1bcca7d" +deps = ["PrecompileTools"] +git-tree-sha1 = "5c3d09cc4f31f5fc6af001c250bf1278733100ff" uuid = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" -version = "1.2.1" +version = "1.3.4" [[deps.RecipesPipeline]] -deps = ["Dates", "NaNMath", "PlotUtils", "RecipesBase"] -git-tree-sha1 = "e7eac76a958f8664f2718508435d058168c7953d" +deps = ["Dates", "NaNMath", "PlotUtils", "PrecompileTools", "RecipesBase"] +git-tree-sha1 = "45cf9fd0ca5839d06ef333c8201714e888486342" uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" -version = "0.6.3" +version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArraysCore", "ChainRulesCore", "DocStringExtensions", "FillArrays", "GPUArraysCore", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "ZygoteRules"] -git-tree-sha1 = "4ce7584604489e537b2ab84ed92b4107d03377f0" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.31.2" +version = "2.38.10" + + [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsMeasurementsExt = "Measurements" + RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsTrackerExt = "Tracker" + RecursiveArrayToolsZygoteExt = "Zygote" + + [deps.RecursiveArrayTools.weakdeps] + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "3ee71214057e29a8466f5d70cfe745236aa1d9d7" +deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] +git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.11" +version = "0.2.23" [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" version = "1.2.2" -[[deps.Referenceables]] -deps = ["Adapt"] -git-tree-sha1 = "e681d3bfa49cd46c3c161505caddf20f0e62aaa9" -uuid = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -version = "0.1.2" - [[deps.RelocatableFolders]] deps = ["SHA", "Scratch"] -git-tree-sha1 = "22c5201127d7b243b9ee1de3b43c408879dff60f" +git-tree-sha1 = "ffdaf70d81cf6ff22c2b6e733c900c3321cab864" uuid = "05181044-ff0b-4ac5-8273-598c1e38db00" -version = "0.3.0" +version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] @@ -1509,38 +2197,33 @@ git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" version = "1.1.1" -[[deps.ReverseDiff]] -deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] -git-tree-sha1 = "b8e2eb3d8e1530acb73d8949eab3cedb1d43f840" -uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" -version = "1.14.1" - [[deps.Rmath]] deps = ["Random", "Rmath_jll"] -git-tree-sha1 = "bf3188feca147ce108c76ad82c2792c57abe7b1f" +git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" uuid = "79098fc4-a85e-5d69-aa6a-4863f24498fa" -version = "0.7.0" +version = "0.8.0" [[deps.Rmath_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "68db32dff12bb6127bac73c209881191bf0efbb7" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "58cdd8fb2201a6267e1db87ff148dd6c1dbd8ad8" uuid = "f50d1b31-88e8-58de-be2c-1cc44531875f" -version = "0.3.0+0" +version = "0.5.1+0" [[deps.RuntimeGeneratedFunctions]] deps = ["ExprTools", "SHA", "Serialization"] -git-tree-sha1 = "cdc1e4278e91a6ad530770ebb327f9ed83cf10c4" +git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" -version = "0.5.3" +version = "0.5.13" [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" +version = "0.7.0" -[[deps.SIMDDualNumbers]] -deps = ["ForwardDiff", "IfElse", "SLEEFPirates", "VectorizationBase"] -git-tree-sha1 = "dd4195d308df24f33fb10dde7c22103ba88887fa" -uuid = "3cdde19b-5bb0-4aaf-8931-af3e248e098b" -version = "0.1.1" +[[deps.SIMD]] +deps = ["PrecompileTools"] +git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87" +uuid = "fdea26ae-647d-5447-a871-4b548cad5224" +version = "3.7.1" [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" @@ -1549,36 +2232,62 @@ version = "0.1.0" [[deps.SLEEFPirates]] deps = ["IfElse", "Static", "VectorizationBase"] -git-tree-sha1 = "7ee0e13ac7cd77f2c0e93bff8c40c45f05c77a5a" +git-tree-sha1 = "456f610ca2fbd1c14f5fcf31c6bfadc55e7d66e0" uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" -version = "0.6.33" +version = "0.6.43" [[deps.SciMLBase]] -deps = ["ArrayInterfaceCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "RecipesBase", "RecursiveArrayTools", "StaticArraysCore", "Statistics", "Tables"] -git-tree-sha1 = "3077587613bd4ba73e2acd4df2d1300ef19d8513" +deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] +git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.47.0" +version = "1.98.1" +weakdeps = ["Zygote"] + + [deps.SciMLBase.extensions] + ZygoteExt = "Zygote" [[deps.SciMLBenchmarks]] deps = ["Git", "IJulia", "InteractiveUtils", "Markdown", "Pkg", "Weave"] -git-tree-sha1 = "6f2bf702ad4063c0f65fe6be3a05a6c386a83b66" +git-tree-sha1 = "f4076dd5a103010d48bb6c4e50c5526f6622fa96" uuid = "31c91b34-3c75-11e9-0341-95557aab0344" -version = "0.1.0" +version = "0.1.3" + +[[deps.SciMLNLSolve]] +deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] +git-tree-sha1 = "765b788339abd7d983618c09cfc0192e2b6b15fd" +uuid = "e9a6253c-8580-4d32-9898-8661bb511710" +version = "0.1.9" + +[[deps.SciMLOperators]] +deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "6149620767866d4b0f0f7028639b6e661b6a1e44" +uuid = "c0aeaf25-5076-4817-a8d5-81caf7dfa961" +version = "0.3.12" +weakdeps = ["SparseArrays", "StaticArraysCore"] + + [deps.SciMLOperators.extensions] + SciMLOperatorsSparseArraysExt = "SparseArrays" + SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" + +[[deps.ScientificTypesBase]] +git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" +uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" +version = "3.0.0" [[deps.Scratch]] deps = ["Dates"] -git-tree-sha1 = "f94f779c94e58bf9ea243e77a37e16d9de9126bd" +git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" uuid = "6c6a2e73-6563-6170-7368-637461726353" -version = "1.1.1" +version = "1.2.1" [[deps.Serialization]] uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" [[deps.Setfield]] -deps = ["ConstructionBase", "Future", "MacroTools", "Requires"] -git-tree-sha1 = "38d88503f695eb0301479bc9b0d4320b378bafe5" +deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] +git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "0.8.2" +version = "1.1.1" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] @@ -1596,9 +2305,19 @@ uuid = "992d4aef-0814-514b-bc4d-f2e9a6c4116f" version = "1.0.3" [[deps.SimpleBufferStream]] -git-tree-sha1 = "874e8867b33a00e784c8a7e4b60afe9e037b74e1" +git-tree-sha1 = "f305871d2f381d21527c770d4788c06c097c9bc1" uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" -version = "1.1.0" +version = "1.2.0" + +[[deps.SimpleNonlinearSolve]] +deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" +uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" +version = "0.1.23" +weakdeps = ["NNlib"] + + [deps.SimpleNonlinearSolve.extensions] + SimpleNonlinearSolveNNlibExt = "NNlib" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -1606,10 +2325,10 @@ git-tree-sha1 = "5d7e3f4e11935503d3ecaf7186eac40602e7d231" uuid = "699a6c99-e7fa-54fc-8d76-47d257e15c1d" version = "0.9.4" -[[deps.SnoopPrecompile]] -git-tree-sha1 = "3841791b9d1a4d5a4394d7eb4c43f42303a20e0c" -uuid = "66db9d55-30c0-4569-8b51-7e840670fc0c" -version = "1.0.0" +[[deps.SimpleUnPack]] +git-tree-sha1 = "58e6353e72cde29b90a69527e56df1b5c3d8c437" +uuid = "ce78b400-467f-4804-87d8-8f486da07d0a" +version = "1.1.0" [[deps.Sobol]] deps = ["DelimitedFiles", "Random"] @@ -1628,64 +2347,118 @@ version = "1.1.0" [[deps.SortingAlgorithms]] deps = ["DataStructures"] -git-tree-sha1 = "b3363d7460f7d098ca0912c69b082f75625d7508" +git-tree-sha1 = "66e0a8e672a0bdfca2c3f5937efb8538b9ddc085" uuid = "a2af1166-a08f-5f64-846c-94a0d3cef48c" -version = "1.0.1" +version = "1.2.1" [[deps.SparseArrays]] -deps = ["LinearAlgebra", "Random"] +deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" +version = "1.10.0" [[deps.SparseDiffTools]] -deps = ["Adapt", "ArrayInterfaceCore", "ArrayInterfaceStaticArrays", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "Requires", "SparseArrays", "StaticArrays", "VertexSafeGraphs"] -git-tree-sha1 = "9287f8a1831e7b978f609a4c52c8b94ba6e863ad" +deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] +git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "1.25.1" +version = "2.18.0" + + [deps.SparseDiffTools.extensions] + SparseDiffToolsEnzymeExt = "Enzyme" + SparseDiffToolsPolyesterExt = "Polyester" + SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" + SparseDiffToolsSymbolicsExt = "Symbolics" + SparseDiffToolsZygoteExt = "Zygote" + + [deps.SparseDiffTools.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + +[[deps.SparseInverseSubset]] +deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] +git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" +uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" +version = "0.1.2" + +[[deps.Sparspak]] +deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] +git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" +uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" +version = "0.3.9" [[deps.SpecialFunctions]] -deps = ["ChainRulesCore", "IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] -git-tree-sha1 = "d75bda01f8c31ebb72df80a46c88b25d1c79c56d" +deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] +git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" uuid = "276daf66-3868-5448-9aa4-cd146d93841b" -version = "2.1.7" +version = "2.5.0" +weakdeps = ["ChainRulesCore"] + + [deps.SpecialFunctions.extensions] + SpecialFunctionsChainRulesCoreExt = "ChainRulesCore" [[deps.SplittablesBase]] deps = ["Setfield", "Test"] -git-tree-sha1 = "39c9f91521de844bad65049efd4f9223e7ed43f9" +git-tree-sha1 = "e08a62abc517eb79667d0a29dc08a3b589516bb5" uuid = "171d559e-b47b-412a-8079-5efa626c420e" -version = "0.1.14" +version = "0.1.15" [[deps.StableRNGs]] -deps = ["Random", "Test"] -git-tree-sha1 = "3be7d49667040add7ee151fefaf1f8c04c8c8276" +deps = ["Random"] +git-tree-sha1 = "83e6cce8324d49dfaf9ef059227f91ed4441a8e5" uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" -version = "1.0.0" +version = "1.0.2" [[deps.Static]] deps = ["IfElse"] -git-tree-sha1 = "f94f9d627ba3f91e41a815b9f9f977d729e2e06f" +git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.7.6" +version = "0.8.10" + +[[deps.StaticArrayInterface]] +deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] +git-tree-sha1 = "96381d50f1ce85f2663584c8e886a6ca97e60554" +uuid = "0d7ed370-da01-4f52-bd93-41d350b8b718" +version = "1.8.0" +weakdeps = ["OffsetArrays", "StaticArrays"] + + [deps.StaticArrayInterface.extensions] + StaticArrayInterfaceOffsetArraysExt = "OffsetArrays" + StaticArrayInterfaceStaticArraysExt = "StaticArrays" [[deps.StaticArrays]] -deps = ["LinearAlgebra", "Random", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "23368a3313d12a2326ad0035f0db0c0966f438ef" +deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] +git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.5.2" +version = "1.9.10" +weakdeps = ["ChainRulesCore", "Statistics"] + + [deps.StaticArrays.extensions] + StaticArraysChainRulesCoreExt = "ChainRulesCore" + StaticArraysStatisticsExt = "Statistics" [[deps.StaticArraysCore]] -git-tree-sha1 = "66fe9eb253f910fe8cf161953880cfdaef01cdf0" +git-tree-sha1 = "192954ef1208c7019899fbf8049e717f92959682" uuid = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" -version = "1.0.1" +version = "1.4.3" + +[[deps.StatisticalTraits]] +deps = ["ScientificTypesBase"] +git-tree-sha1 = "542d979f6e756f13f862aa00b224f04f9e445f11" +uuid = "64bff920-2084-43da-a3e6-9bb72801c0c9" +version = "3.4.0" [[deps.Statistics]] deps = ["LinearAlgebra", "SparseArrays"] uuid = "10745b16-79ce-11e8-11f9-7d13ad32a3b2" +version = "1.10.0" [[deps.StatsAPI]] deps = ["LinearAlgebra"] -git-tree-sha1 = "f9af7f195fb13589dd2e2d57fdb401717d2eb1f6" +git-tree-sha1 = "1ff449ad350c9c4cbc756624d6f8a8c3ef56d3ed" uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" -version = "1.5.0" +version = "1.7.0" [[deps.StatsBase]] deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] @@ -1694,58 +2467,90 @@ uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" version = "0.33.21" [[deps.StatsFuns]] -deps = ["ChainRulesCore", "HypergeometricFunctions", "InverseFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] -git-tree-sha1 = "5783b877201a82fc0014cbf381e7e6eb130473a4" +deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] +git-tree-sha1 = "b423576adc27097764a90e163157bcfc9acf0f46" uuid = "4c63d2b9-4356-54db-8cca-17b64c39e42c" -version = "1.0.1" +version = "1.3.2" +weakdeps = ["ChainRulesCore", "InverseFunctions"] + + [deps.StatsFuns.extensions] + StatsFunsChainRulesCoreExt = "ChainRulesCore" + StatsFunsInverseFunctionsExt = "InverseFunctions" [[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "a13569d9c5b2a7b35ce0462864138383fceab26f" +deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] +git-tree-sha1 = "b341540a647b39728b6d64eaeda82178e848f76e" uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.52.0" +version = "6.62.0" [[deps.StrideArraysCore]] -deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "ManualMemory", "SIMDTypes", "Static", "ThreadingUtilities"] -git-tree-sha1 = "ac730bd978bf35f9fe45daa0bd1f51e493e97eb4" +deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] +git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" uuid = "7792a7ef-975c-4747-a70f-980b88e8d1da" -version = "0.3.15" +version = "0.5.7" [[deps.StringEncodings]] deps = ["Libiconv_jll"] -git-tree-sha1 = "50ccd5ddb00d19392577902f0079267a72c5ab04" +git-tree-sha1 = "b765e46ba27ecf6b44faf70df40c57aa3a547dcb" uuid = "69024149-9ee7-55f6-a4c4-859efe599b68" -version = "0.3.5" +version = "0.3.7" + +[[deps.StringManipulation]] +deps = ["PrecompileTools"] +git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" +uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" +version = "0.4.0" [[deps.StructArrays]] -deps = ["Adapt", "DataAPI", "StaticArrays", "Tables"] -git-tree-sha1 = "ec47fb6069c57f1cee2f67541bf8f23415146de7" +deps = ["ConstructionBase", "DataAPI", "Tables"] +git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.11" +version = "0.6.18" +weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] + + [deps.StructArrays.extensions] + StructArraysAdaptExt = "Adapt" + StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysSparseArraysExt = "SparseArrays" + StructArraysStaticArraysExt = "StaticArrays" [[deps.SuiteSparse]] deps = ["Libdl", "LinearAlgebra", "Serialization", "SparseArrays"] uuid = "4607b0f0-06f3-5cda-b6b1-a6196a1729e9" [[deps.SuiteSparse_jll]] -deps = ["Artifacts", "Libdl", "Pkg", "libblastrampoline_jll"] +deps = ["Artifacts", "Libdl", "libblastrampoline_jll"] uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" +version = "7.2.1+1" + +[[deps.SymbolicIndexingInterface]] +deps = ["DocStringExtensions"] +git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "Metatheory", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TermInterface", "TimerOutputs"] -git-tree-sha1 = "027b43d312f6d52187bb16c2d4f0588ddb8c4bb2" +deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs", "Unityper"] +git-tree-sha1 = "2f3fa844bcd33e40d8c29de5ee8dded7a0a70422" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "0.19.11" +version = "1.4.0" [[deps.Symbolics]] -deps = ["ArrayInterfaceCore", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "Groebner", "IfElse", "Latexify", "Libdl", "LinearAlgebra", "MacroTools", "Markdown", "Metatheory", "NaNMath", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils", "TermInterface", "TreeViews"] -git-tree-sha1 = "4072e46467cfcaca1f7fe2a14f9b060da5edf7d2" +deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils"] +git-tree-sha1 = "28f55dcd865e4a97f262fc476306cee14e8d4651" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "4.10.3" +version = "5.11.0" + + [deps.Symbolics.extensions] + SymbolicsSymPyExt = "SymPy" + + [deps.Symbolics.weakdeps] + SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" [[deps.TOML]] deps = ["Dates"] uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76" +version = "1.0.3" [[deps.TableTraits]] deps = ["IteratorInterfaceExtensions"] @@ -1754,14 +2559,15 @@ uuid = "3783bdb8-4a98-5b6b-af9a-565f29a5fe9c" version = "1.0.1" [[deps.Tables]] -deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "LinearAlgebra", "OrderedCollections", "TableTraits", "Test"] -git-tree-sha1 = "5ce79ce186cc678bbb5c5681ca3379d1ddae11a1" +deps = ["DataAPI", "DataValueInterfaces", "IteratorInterfaceExtensions", "OrderedCollections", "TableTraits"] +git-tree-sha1 = "598cd7c1f68d1e205689b1c2fe65a9f85846f297" uuid = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" -version = "1.7.0" +version = "1.12.0" [[deps.Tar]] deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" +version = "1.10.0" [[deps.TensorCore]] deps = ["LinearAlgebra"] @@ -1769,16 +2575,11 @@ git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" -[[deps.TermInterface]] -git-tree-sha1 = "7aa601f12708243987b88d1b453541a75e3d8c7a" -uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" -version = "0.2.3" - [[deps.TerminalLoggers]] -deps = ["Logging", "Printf"] -git-tree-sha1 = "987a3ebb20307530775f4def7eb9109cfa881748" +deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] +git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" uuid = "5d786b92-1e48-4d6f-9151-6b4477ca9bed" -version = "0.1.0" +version = "0.1.7" [[deps.Test]] deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] @@ -1786,55 +2587,67 @@ uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" [[deps.ThreadingUtilities]] deps = ["ManualMemory"] -git-tree-sha1 = "f8629df51cab659d70d2e5618a430b4d3f37f2c3" +git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" uuid = "8290d209-cae3-49c0-8002-c8c24d57dab5" -version = "0.5.0" - -[[deps.ThreadsX]] -deps = ["ArgCheck", "BangBang", "ConstructionBase", "InitialValues", "MicroCollections", "Referenceables", "Setfield", "SplittablesBase", "Transducers"] -git-tree-sha1 = "d223de97c948636a4f34d1f84d92fd7602dc555b" -uuid = "ac1d9e8a-700a-412c-b207-f0111f4b6c0d" -version = "0.1.10" +version = "0.5.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "464d64b2510a25e6efe410e7edab14fffdc333df" +git-tree-sha1 = "d7298ebdfa1654583468a487e8e83fae9d72dac3" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.20" +version = "0.5.26" [[deps.Tokenize]] -git-tree-sha1 = "2b3af135d85d7e70b863540160208fa612e736b9" +git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" uuid = "0796e94c-ce3b-5d07-9a54-7f471281c624" -version = "0.5.24" +version = "0.5.29" [[deps.TranscodingStreams]] -deps = ["Random", "Test"] -git-tree-sha1 = "216b95ea110b5972db65aa90f88d8d89dcb8851c" +git-tree-sha1 = "0c45878dcfdcfa8480052b6ab162cdd138781742" uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" -version = "0.9.6" +version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "c76399a3bbe6f5a88faa33c8f8a65aa631d95013" +deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] +git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.73" - -[[deps.TreeViews]] -deps = ["Test"] -git-tree-sha1 = "8d0d7a3fe2f30d6a7f833a5f19f7c7a5b396eae6" -uuid = "a2a6695c-b41b-5b7d-aed9-dbfdeacea5d7" -version = "0.3.0" +version = "0.4.80" + + [deps.Transducers.extensions] + TransducersBlockArraysExt = "BlockArrays" + TransducersDataFramesExt = "DataFrames" + TransducersLazyArraysExt = "LazyArrays" + TransducersOnlineStatsBaseExt = "OnlineStatsBase" + TransducersReferenceablesExt = "Referenceables" + + [deps.Transducers.weakdeps] + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" + LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" + OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" + Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" [[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "SnoopPrecompile", "Static", "VectorizationBase"] -git-tree-sha1 = "8987cf4a0f8d6c375e4ab1438a048e0a185151e4" +deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] +git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.1.13" +version = "0.2.1" + +[[deps.Tricks]] +git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505" +uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" +version = "0.1.10" + +[[deps.TruncatedStacktraces]] +deps = ["InteractiveUtils", "MacroTools", "Preferences"] +git-tree-sha1 = "ea3e54c2bdde39062abf5a9758a23735558705e1" +uuid = "781d530d-4396-4725-bb49-402e4bee1e77" +version = "1.4.0" [[deps.URIs]] -git-tree-sha1 = "e59ecc5a41b000fa94423a578d29290c7266fc10" +git-tree-sha1 = "67db6cc7b3821e19ebe75791a9dd19c9b1188f2b" uuid = "5c2747f8-b7ea-4ff2-ba2e-563bfd36b1d4" -version = "1.4.0" +version = "1.5.1" [[deps.UUIDs]] deps = ["Random", "SHA"] @@ -1855,21 +2668,43 @@ uuid = "1cfade01-22cf-5700-b092-accc4b62d6e1" version = "0.4.1" [[deps.Unitful]] -deps = ["ConstructionBase", "Dates", "LinearAlgebra", "Random"] -git-tree-sha1 = "b649200e887a487468b71821e2644382699f1b0f" +deps = ["Dates", "LinearAlgebra", "Random"] +git-tree-sha1 = "c0667a8e676c53d390a09dc6870b3d8d6650e2bf" uuid = "1986cc42-f94f-5a68-af5c-568840ba703d" -version = "1.11.0" +version = "1.22.0" +weakdeps = ["ConstructionBase", "InverseFunctions"] + + [deps.Unitful.extensions] + ConstructionBaseUnitfulExt = "ConstructionBase" + InverseFunctionsUnitfulExt = "InverseFunctions" + +[[deps.UnitfulLatexify]] +deps = ["LaTeXStrings", "Latexify", "Unitful"] +git-tree-sha1 = "975c354fcd5f7e1ddcc1f1a23e6e091d99e99bc8" +uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728" +version = "1.6.4" + +[[deps.Unityper]] +deps = ["ConstructionBase"] +git-tree-sha1 = "25008b734a03736c41e2a7dc314ecb95bd6bbdb0" +uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" +version = "0.1.6" + +[[deps.UnsafeAtomics]] +git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" +version = "0.2.1" [[deps.Unzip]] -git-tree-sha1 = "34db80951901073501137bdbc3d5a8e7bbd06670" +git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d" -version = "0.1.2" +version = "0.2.0" [[deps.VectorizationBase]] -deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static"] -git-tree-sha1 = "7446183197e8a91c46e2c7b25667901451deff40" +deps = ["ArrayInterface", "CPUSummary", "HostCPUFeatures", "IfElse", "LayoutPointers", "Libdl", "LinearAlgebra", "SIMDTypes", "Static", "StaticArrayInterface"] +git-tree-sha1 = "4ab62a49f1d8d9548a1c8d1a75e5f55cf196f64e" uuid = "3d5dd08c-fd9d-11e8-17fa-ed2836048c2f" -version = "0.21.44" +version = "0.21.71" [[deps.VersionParsing]] git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" @@ -1882,113 +2717,161 @@ git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" version = "0.2.0" +[[deps.Vulkan_Loader_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] +git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" +uuid = "a44049a8-05dd-5a78-86c9-5fde0876e88c" +version = "1.3.243+0" + [[deps.Wayland_jll]] -deps = ["Artifacts", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] -git-tree-sha1 = "3e61f0b86f90dacb0bc0e73a0c5a83f6a8636e23" +deps = ["Artifacts", "EpollShim_jll", "Expat_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Pkg", "XML2_jll"] +git-tree-sha1 = "85c7811eddec9e7f22615371c3cc81a504c508ee" uuid = "a2964d1f-97da-50d4-b82a-358c7fce9d89" -version = "1.19.0+0" +version = "1.21.0+2" [[deps.Wayland_protocols_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4528479aa01ee1b3b4cd0e6faef0e04cf16466da" +git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" -version = "1.25.0+0" +version = "1.36.0+0" [[deps.Weave]] -deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "Requires", "Serialization", "YAML"] -git-tree-sha1 = "3095e0708dc274e3ce10fca14327d8d7e8de3d30" +deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] +git-tree-sha1 = "092217eb5443926d200ae9325f103906efbb68b1" uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" -version = "0.10.9" +version = "0.10.12" + +[[deps.WeightInitializers]] +deps = ["ChainRulesCore", "LinearAlgebra", "PartialFunctions", "PrecompileTools", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "f0e6760ef9d22f043710289ddf29e4a4048c4822" +uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" +version = "0.1.7" + + [deps.WeightInitializers.extensions] + WeightInitializersCUDAExt = "CUDA" + + [deps.WeightInitializers.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + +[[deps.WoodburyMatrices]] +deps = ["LinearAlgebra", "SparseArrays"] +git-tree-sha1 = "c1a7aa6219628fcd757dede0ca95e245c5cd9511" +uuid = "efce3f68-66dc-5838-9240-27a6d6f5f9b6" +version = "1.0.0" [[deps.XML2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Pkg", "Zlib_jll"] -git-tree-sha1 = "58443b63fb7e465a8a7210828c91c08b92132dff" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] +git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.9.14+0" +version = "2.13.5+0" [[deps.XSLT_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "Pkg", "XML2_jll", "Zlib_jll"] -git-tree-sha1 = "91844873c4085240b95e795f692c4cec4d805f8a" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] +git-tree-sha1 = "7d1671acbe47ac88e981868a078bd6b4e27c5191" uuid = "aed1982a-8fda-507f-9586-7b0439959a61" -version = "1.1.34+0" +version = "1.1.42+0" + +[[deps.XZ_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6" +uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" +version = "5.6.4+0" + +[[deps.Xorg_libICE_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "326b4fea307b0b39892b3e85fa451692eda8d46c" +uuid = "f67eecfb-183a-506d-b269-f58e52b52d7c" +version = "1.1.1+0" + +[[deps.Xorg_libSM_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libICE_jll"] +git-tree-sha1 = "3796722887072218eabafb494a13c963209754ce" +uuid = "c834827a-8449-5923-a945-d239c165b7dd" +version = "1.2.4+0" [[deps.Xorg_libX11_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] -git-tree-sha1 = "5be649d550f3f4b95308bf0183b82e2582876527" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxcb_jll", "Xorg_xtrans_jll"] +git-tree-sha1 = "9dafcee1d24c4f024e7edc92603cedba72118283" uuid = "4f6342f7-b3d2-589e-9d20-edeb45f2b2bc" -version = "1.6.9+4" +version = "1.8.6+3" [[deps.Xorg_libXau_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4e490d5c960c314f33885790ed410ff3a94ce67e" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "e9216fdcd8514b7072b43653874fd688e4c6c003" uuid = "0c0b7dd1-d40b-584c-a123-a41640f87eec" -version = "1.0.9+4" +version = "1.0.12+0" [[deps.Xorg_libXcursor_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "12e0eb3bc634fa2080c1c37fccf56f7c22989afd" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXfixes_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "807c226eaf3651e7b2c468f687ac788291f9a89b" uuid = "935fb764-8cf2-53bf-bb30-45bb1f8bf724" -version = "1.2.0+4" +version = "1.2.3+0" [[deps.Xorg_libXdmcp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "4fe47bd2247248125c428978740e18a681372dd4" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "89799ae67c17caa5b3b5a19b8469eeee474377db" uuid = "a3789734-cfe1-5b06-b2d0-1dd0d9d62d05" -version = "1.1.3+4" +version = "1.1.5+0" [[deps.Xorg_libXext_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "b7c0aa8c376b31e4852b360222848637f481f8c3" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "d7155fea91a4123ef59f42c4afb5ab3b4ca95058" uuid = "1082639a-0dae-5f34-9b06-72781eeb8cb3" -version = "1.3.4+4" +version = "1.3.6+3" [[deps.Xorg_libXfixes_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "0e0dc7431e7a0587559f9294aeec269471c991a4" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "6fcc21d5aea1a0b7cce6cab3e62246abd1949b86" uuid = "d091e8ba-531a-589c-9de9-94069b037ed8" -version = "5.0.3+4" +version = "6.0.0+0" [[deps.Xorg_libXi_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] -git-tree-sha1 = "89b52bc2160aadc84d707093930ef0bffa641246" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXfixes_jll"] +git-tree-sha1 = "984b313b049c89739075b8e2a94407076de17449" uuid = "a51aa0fd-4e3c-5386-b890-e753decda492" -version = "1.7.10+4" +version = "1.8.2+0" [[deps.Xorg_libXinerama_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll"] -git-tree-sha1 = "26be8b1c342929259317d8b9f7b53bf2bb73b123" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll"] +git-tree-sha1 = "a1a7eaf6c3b5b05cb903e35e8372049b107ac729" uuid = "d1454406-59df-5ea1-beac-c340f2130bc3" -version = "1.1.4+4" +version = "1.1.5+0" [[deps.Xorg_libXrandr_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libXext_jll", "Xorg_libXrender_jll"] -git-tree-sha1 = "34cea83cb726fb58f325887bf0612c6b3fb17631" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libXext_jll", "Xorg_libXrender_jll"] +git-tree-sha1 = "b6f664b7b2f6a39689d822a6300b14df4668f0f4" uuid = "ec84b674-ba8e-5d96-8ba1-2a689ba10484" -version = "1.5.2+4" +version = "1.5.4+0" [[deps.Xorg_libXrender_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "19560f30fd49f4d4efbe7002a1037f8c43d43b96" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "a490c6212a0e90d2d55111ac956f7c4fa9c277a6" uuid = "ea2f1a96-1ddc-540d-b46f-429655e07cfa" -version = "0.9.10+4" +version = "0.9.11+1" [[deps.Xorg_libpthread_stubs_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "6783737e45d3c59a4a4c4091f5f88cdcf0908cbb" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "c57201109a9e4c0585b208bb408bc41d205ac4e9" uuid = "14d82f49-176c-5ed1-bb49-ad3f5cbd8c74" -version = "0.1.0+3" +version = "0.1.2+0" [[deps.Xorg_libxcb_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] -git-tree-sha1 = "daf17f441228e7a3833846cd048892861cff16d6" +deps = ["Artifacts", "JLLWrappers", "Libdl", "XSLT_jll", "Xorg_libXau_jll", "Xorg_libXdmcp_jll", "Xorg_libpthread_stubs_jll"] +git-tree-sha1 = "1a74296303b6524a0472a8cb12d3d87a78eb3612" uuid = "c7cfdc94-dc32-55de-ac96-5a1b8d977c5b" -version = "1.13.0+3" +version = "1.17.0+3" [[deps.Xorg_libxkbfile_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libX11_jll"] -git-tree-sha1 = "926af861744212db0eb001d9e40b5d16292080b2" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libX11_jll"] +git-tree-sha1 = "dbc53e4cf7701c6c7047c51e17d6e64df55dca94" uuid = "cc61e674-0454-545c-8b26-ed2c68acab7a" -version = "1.1.0+4" +version = "1.1.2+1" + +[[deps.Xorg_xcb_util_cursor_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xcb_util_image_jll", "Xorg_xcb_util_jll", "Xorg_xcb_util_renderutil_jll"] +git-tree-sha1 = "04341cb870f29dcd5e39055f895c39d016e18ccd" +uuid = "e920d4aa-a673-5f3a-b3d7-f755a4d47c43" +version = "0.1.4+0" [[deps.Xorg_xcb_util_image_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xcb_util_jll"] @@ -2021,110 +2904,172 @@ uuid = "c22f9ab0-d5fe-5066-847c-f4bb1cd4e361" version = "0.4.1+1" [[deps.Xorg_xkbcomp_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_libxkbfile_jll"] -git-tree-sha1 = "4bcbf660f6c2e714f87e960a171b119d06ee163b" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_libxkbfile_jll"] +git-tree-sha1 = "ab2221d309eda71020cdda67a973aa582aa85d69" uuid = "35661453-b289-5fab-8a00-3d9160c6a3a4" -version = "1.4.2+4" +version = "1.4.6+1" [[deps.Xorg_xkeyboard_config_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Xorg_xkbcomp_jll"] -git-tree-sha1 = "5c8424f8a67c3f2209646d4425f3d415fee5931d" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Xorg_xkbcomp_jll"] +git-tree-sha1 = "691634e5453ad362044e2ad653e79f3ee3bb98c3" uuid = "33bec58e-1273-512f-9401-5d533626f822" -version = "2.27.0+4" +version = "2.39.0+0" [[deps.Xorg_xtrans_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "79c31e7844f6ecf779705fbc12146eb190b7d845" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6dba04dbfb72ae3ebe5418ba33d087ba8aa8cb00" uuid = "c5fb5394-a638-5e4d-96e5-b29de1b5cf10" -version = "1.4.0+3" +version = "1.5.1+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "3c6e8b9f5cdaaa21340f841653942e1a6b6561e5" +git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.7" +version = "0.4.12" [[deps.ZMQ]] -deps = ["FileWatching", "Sockets", "ZeroMQ_jll"] -git-tree-sha1 = "fc68e8a3719166950a0f3e390a14c7302c48f8de" +deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] +git-tree-sha1 = "33333bdded3835f81b9b6353da9243dc4ec62e0f" uuid = "c2297ded-f4af-51ae-bb23-16f91089e4e1" -version = "1.2.1" +version = "1.4.0" [[deps.ZeroMQ_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "libsodium_jll"] -git-tree-sha1 = "fe5c65a526f066fb3000da137d5785d9649a8a47" +deps = ["Artifacts", "JLLWrappers", "Libdl", "libsodium_jll"] +git-tree-sha1 = "f02ce8f0fda1ed40f4d0d59a2ad05e35e8ac9b0e" uuid = "8f1865be-045e-5c20-9c9f-bfbfb0764568" -version = "4.3.4+0" +version = "4.3.5+3" [[deps.Zlib_jll]] deps = ["Libdl"] uuid = "83775a58-1f1d-513f-b197-d71354ab007a" +version = "1.2.13+1" [[deps.Zstd_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "e45044cd873ded54b6a5bac0eb5c971392cf1927" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.2+0" +version = "1.5.7+0" [[deps.Zygote]] -deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] -git-tree-sha1 = "91822d41345b9b9b84babe4debd18dd6ccf45311" +deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] +git-tree-sha1 = "0b3c944f5d2d8b466c5d20a84c229c17c528f49e" uuid = "e88e6eb3-aa80-5325-afca-941959d7151f" -version = "0.6.43" +version = "0.6.75" + + [deps.Zygote.extensions] + ZygoteColorsExt = "Colors" + ZygoteDistancesExt = "Distances" + ZygoteTrackerExt = "Tracker" + + [deps.Zygote.weakdeps] + Colors = "5ae59095-9a9b-59fe-a467-6f913c188581" + Distances = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.ZygoteRules]] -deps = ["MacroTools"] -git-tree-sha1 = "8c1a8e4dfacb1fd631745552c8db35d0deb09ea0" +deps = ["ChainRulesCore", "MacroTools"] +git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.2" +version = "0.2.5" -[[deps.libaom_jll]] +[[deps.eudev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] +git-tree-sha1 = "431b678a28ebb559d224c0b6b6d01afce87c51ba" +uuid = "35ca27e7-8b34-5b7f-bca9-bdc33f59eb06" +version = "3.2.9+0" + +[[deps.fzf_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "6e50f145003024df4f5cb96c7fce79466741d601" +uuid = "214eeab7-80f7-51ab-84ad-2988db7cef09" +version = "0.56.3+0" + +[[deps.gperf_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "3a2ea60308f0996d26f1e5354e10c24e9ef905d4" +git-tree-sha1 = "0ba42241cb6809f1a278d0bcb976e0483c3f1f2d" +uuid = "1a1c6b14-54f6-533d-8383-74cd7377aa70" +version = "3.1.1+1" + +[[deps.libaom_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "522c1df09d05a71785765d19c9524661234738e9" uuid = "a4ae2306-e953-59d6-aa16-d00cac43593b" -version = "3.4.0+0" +version = "3.11.0+0" [[deps.libass_jll]] -deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "5982a94fcba20f02f42ace44b9894ee2b140fe47" +deps = ["Artifacts", "Bzip2_jll", "FreeType2_jll", "FriBidi_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "e17c115d55c5fbb7e52ebedb427a0dca79d4484e" uuid = "0ac62f75-1d6f-5e53-bd7c-93b484bb37c0" -version = "0.15.1+0" +version = "0.15.2+0" [[deps.libblastrampoline_jll]] -deps = ["Artifacts", "Libdl", "OpenBLAS_jll"] +deps = ["Artifacts", "Libdl"] uuid = "8e850b90-86db-534c-a0d3-1478176c7d93" +version = "5.11.0+0" -[[deps.libfdk_aac_jll]] +[[deps.libdecor_jll]] +deps = ["Artifacts", "Dbus_jll", "JLLWrappers", "Libdl", "Libglvnd_jll", "Pango_jll", "Wayland_jll", "xkbcommon_jll"] +git-tree-sha1 = "9bf7903af251d2050b467f76bdbe57ce541f7f4f" +uuid = "1183f4f0-6f2a-5f1a-908b-139f9cdfea6f" +version = "0.2.2+0" + +[[deps.libevdev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "daacc84a041563f965be61859a36e17c4e4fcd55" +git-tree-sha1 = "141fe65dc3efabb0b1d5ba74e91f6ad26f84cc22" +uuid = "2db6ffa8-e38f-5e21-84af-90c45d0032cc" +version = "1.11.0+0" + +[[deps.libfdk_aac_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "8a22cf860a7d27e4f3498a0fe0811a7957badb38" uuid = "f638f0a6-7fb0-5443-88ba-1cc74229b280" -version = "2.0.2+0" +version = "2.0.3+0" + +[[deps.libinput_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "eudev_jll", "libevdev_jll", "mtdev_jll"] +git-tree-sha1 = "ad50e5b90f222cfe78aa3d5183a20a12de1322ce" +uuid = "36db933b-70db-51c0-b978-0f229ee0e533" +version = "1.18.0+0" [[deps.libpng_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Zlib_jll"] -git-tree-sha1 = "94d180a6d2b5e55e447e2d27a29ed04fe79eb30c" +deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] +git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.38+0" +version = "1.6.45+1" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "848ab3d00fe39d6fbc2a8641048f8f272af1c51e" +git-tree-sha1 = "f76d682d87eefadd3f165d8d9fda436464213142" uuid = "a9144af2-ca23-56d9-984f-0d03f7b5ccf8" -version = "1.0.20+0" +version = "1.0.20+3" [[deps.libvorbis_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Ogg_jll", "Pkg"] -git-tree-sha1 = "b910cb81ef3fe6e78bf6acee440bda86fd6ae00c" +git-tree-sha1 = "490376214c4721cdaca654041f635213c6165cb3" uuid = "f27f6e37-5d2b-51aa-960f-b287f2bc3b7a" -version = "1.3.7+1" +version = "1.3.7+2" + +[[deps.mtdev_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "814e154bdb7be91d78b6802843f76b6ece642f11" +uuid = "009596ad-96f7-51b1-9f1b-5ce2d5e8a71e" +version = "1.1.6+0" [[deps.nghttp2_jll]] deps = ["Artifacts", "Libdl"] uuid = "8e850ede-7688-5339-a07c-302acd2aaf8d" +version = "1.52.0+1" + +[[deps.oneTBB_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" +version = "2021.12.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] uuid = "3f19e933-33d8-53b3-aaab-bd5110c3b7a0" +version = "17.4.0+2" [[deps.x264_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -2140,6 +3085,6 @@ version = "3.5.0+0" [[deps.xkbcommon_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] -git-tree-sha1 = "9ebfc140cc56e8c2156a15ceac2f0302e327ac0a" +git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "1.4.1+0" +version = "1.4.1+2" diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index 6a6c5a645..68ed73d02 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -7,8 +7,8 @@ Lux = "b2108857-7c20-44ae-9111-449ecde12c47" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" NeuralPDE = "315f7962-48a3-4962-8226-d0f33b1235f0" Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -OptimizationFlux = "253f991c-a7b2-45f8-8852-8b9a9df78a86" OptimizationOptimJL = "36348300-93cb-4f02-beb5-3c3902f8871e" +OptimizationOptimisers = "42dfb2eb-d2b4-4451-abcd-913932933ac1" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" QuasiMonteCarlo = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" @@ -18,12 +18,11 @@ DelimitedFiles = "1" Integrals = "3, 4" IntegralsCuba = "0.2, 0.3" IntegralsCubature = "0.2" -Lux = "0.4, 0.5" -ModelingToolkit = "8" +Lux = "0.5, 1" +ModelingToolkit = "8, 9" NeuralPDE = "5" -Optimization = "3" -OptimizationFlux = "0.1, 0.2" -OptimizationOptimJL = "0.1, 0.2, 0.3" +Optimization = "3, 4" +OptimizationOptimJL = "0.1, 0.2, 0.3, 0.4" Plots = "1" -QuasiMonteCarlo = "0.2" -SciMLBenchmarks = "0.1" +QuasiMonteCarlo = "0.2, 0.3" +SciMLBenchmarks = "0.1" \ No newline at end of file diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 708e104b3..ffd69e4ad 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -14,7 +14,8 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba -using OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL +using ModelingToolkit, Optimization, OptimizationOptimJL +using OptimizationOptimisers using Lux, Plots using DelimitedFiles using QuasiMonteCarlo @@ -140,7 +141,7 @@ end ``` ```julia -maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS +maxIters = [(1,1,1,1,1,1,1100),(1,1,1,1,1100,1100,1100)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), @@ -159,7 +160,7 @@ strategies_short_name = ["CubaCuhre", "StochasticTraining", "QuasiRandomTraining"] -minimizers = [ADAM(0.005),BFGS()] +minimizers = [Optimisers.ADAM(0.005),BFGS()] minimizers_short_name = ["ADAM","BFGS"] # Run models diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index b5a1fc73b..da6899a0f 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -14,7 +14,7 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba -using OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL +using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles using QuasiMonteCarlo diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index 71011e539..d1421a602 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -12,7 +12,7 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba -using OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL +using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles using QuasiMonteCarlo diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index 754a60c97..c7a983054 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -14,7 +14,7 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba -using OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL +using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles using QuasiMonteCarlo diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index cf1d383fa..bd4d260ef 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -14,7 +14,7 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba -using OptimizationFlux, ModelingToolkit, Optimization, OptimizationOptimJL +using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles using QuasiMonteCarlo From dff54c5e2bf8f1e4617f051cbfb499f28b370703 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 18 Jan 2025 18:54:25 +0530 Subject: [PATCH 02/22] Updates --- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 3 ++- benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd | 3 ++- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 3 ++- benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd | 3 ++- 4 files changed, 8 insertions(+), 4 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index da6899a0f..257f73ce0 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -16,6 +16,7 @@ using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots +using OptimizationOptimisers using DelimitedFiles using QuasiMonteCarlo import ModelingToolkit: Interval, infimum, supremum @@ -122,7 +123,7 @@ strategies_short_name = [#"CubaCuhre", "StochasticTraining", "QuasiRandomTraining"] -minimizers = [ADAM(0.001), +minimizers = [Optimisers.ADAM(0.001), #BFGS()] LBFGS()] diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index d1421a602..ff50b6c8b 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -14,6 +14,7 @@ using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots +using OptimizationOptimisers using DelimitedFiles using QuasiMonteCarlo import ModelingToolkit: Interval, infimum, supremum @@ -162,7 +163,7 @@ strategies_short_name = ["CubaCuhre", "StochasticTraining", "QuasiRandomTraining"] -minimizers = [ADAM(0.005), +minimizers = [Optimisers.ADAM(0.005), #BFGS()] LBFGS()] diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index c7a983054..11c65a300 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -16,6 +16,7 @@ using NeuralPDE using Integrals, IntegralsCubature, IntegralsCuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots +using OptimizationOptimisers using DelimitedFiles using QuasiMonteCarlo import ModelingToolkit: Interval, infimum, supremum @@ -159,7 +160,7 @@ strategies_short_name = ["CubaCuhre", "StochasticTraining", "QuasiRandomTraining"] -minimizers = [ADAM(0.005), +minimizers = [Optimisers.ADAM(0.005), #BFGS()] LBFGS()] diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index bd4d260ef..e4b870955 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -17,6 +17,7 @@ using Integrals, IntegralsCubature, IntegralsCuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles +using OptimizationOptimisers using QuasiMonteCarlo import ModelingToolkit: Interval, infimum, supremum ``` @@ -163,7 +164,7 @@ strategies_short_name = ["CubaCuhre", "StochasticTraining", "QuasiRandomTraining"] -minimizers = [ADAM(0.005), +minimizers = [Optimisers.ADAM(0.005), #BFGS()] LBFGS()] From eea28c62bde7b8fcf38f503b909ab94126edcb89 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sun, 19 Jan 2025 08:43:39 +0530 Subject: [PATCH 03/22] Changed number of iterations --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 10 +++++----- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 6 +++--- benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd | 8 ++++---- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 8 ++++---- benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd | 8 ++++---- 5 files changed, 20 insertions(+), 20 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index ffd69e4ad..ccb597a72 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -141,13 +141,13 @@ end ``` ```julia -maxIters = [(1,1,1,1,1,1,1100),(1,1,1,1,1100,1100,1100)] #iters for ADAM/LBFGS +maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 257f73ce0..8a09c5a02 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -106,9 +106,9 @@ maxIters = [(5000,5000,5000,5000,5000,5000),(300,300,300,300,300,300)] #iters fo # maxIters = [(5,5,5,5,5,5),(3,3,3,3,3,3)] #iters for ADAM/LBFGS strategies = [#NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-3, maxiters = 10, batch = 10), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol=1e-5, maxiters=100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol=1e-5, maxiters=100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol=1e-5, maxiters=100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol=1e-5, maxiters=1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol=1e-5, maxiters=1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol=1e-5, maxiters=1100), NeuralPDE.GridTraining([0.2,0.1]), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index ff50b6c8b..441903d5b 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -147,10 +147,10 @@ end maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,300,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,2,2),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index 11c65a300..7b5d23f31 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -144,10 +144,10 @@ end maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,500,500,500,500)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,2,2,2,2),(1,1,1,2,2,2,2)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.1), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index e4b870955..09866e6c4 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -148,10 +148,10 @@ end maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,300,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,10,10,10,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 50), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 50, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 50), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 50), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] From 699e82148942d61bed3e6d9cee318566b923d821 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Mon, 20 Jan 2025 23:54:55 +0530 Subject: [PATCH 04/22] Updates done --- benchmarks/PINNErrorsVsTime/Manifest.toml | 1178 +++++++++++------ benchmarks/PINNErrorsVsTime/Project.toml | 20 +- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 10 +- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 2 +- .../PINNErrorsVsTime/hamilton_jacobi_et.jmd | 2 +- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 2 +- .../PINNErrorsVsTime/nernst_planck_et.jmd | 2 +- 7 files changed, 769 insertions(+), 447 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index 0f54fd918..ea35a13c4 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -2,18 +2,18 @@ julia_version = "1.10.7" manifest_format = "2.0" -project_hash = "aa05273300de37d6dbc3a9987aec26fb1646d1ff" +project_hash = "95862eb7f14319e4f24b9e3e5572d4d4e953e4aa" [[deps.ADTypes]] -git-tree-sha1 = "016833eb52ba2d6bea9fcb50ca295980e728ee24" +git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "0.2.7" +version = "1.11.0" +weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] -[[deps.AbstractAlgebra]] -deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"] -git-tree-sha1 = "d7832de8cf7af26abac741f10372080ac6cb73df" -uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d" -version = "0.34.7" + [deps.ADTypes.extensions] + ADTypesChainRulesCoreExt = "ChainRulesCore" + ADTypesConstructionBaseExt = "ConstructionBase" + ADTypesEnzymeCoreExt = "EnzymeCore" [[deps.AbstractFFTs]] deps = ["LinearAlgebra"] @@ -27,10 +27,10 @@ weakdeps = ["ChainRulesCore", "Test"] AbstractFFTsTestExt = "Test" [[deps.AbstractMCMC]] -deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] -git-tree-sha1 = "87e63dcb990029346b091b170252f3c416568afc" +deps = ["BangBang", "ConsoleProgressMonitor", "Distributed", "FillArrays", "LogDensityProblems", "Logging", "LoggingExtras", "ProgressLogging", "Random", "StatsBase", "TerminalLoggers", "Transducers"] +git-tree-sha1 = "aa469a7830413bd4c855963e3f648bd9d145c2c3" uuid = "80f14c24-f653-4e6a-9b94-39d6b0f70001" -version = "4.4.2" +version = "5.6.0" [[deps.AbstractTrees]] git-tree-sha1 = "2d9c9a55f9c93e8887ad391fbae72f8ef55e1177" @@ -64,9 +64,9 @@ version = "0.1.41" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "cde29ddf7e5726c9fb511f340244ea3481267608" +git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "3.7.2" +version = "4.1.1" weakdeps = ["StaticArrays"] [deps.Adapt.extensions] @@ -74,9 +74,9 @@ weakdeps = ["StaticArrays"] [[deps.AdvancedHMC]] deps = ["AbstractMCMC", "ArgCheck", "DocStringExtensions", "InplaceOps", "LinearAlgebra", "LogDensityProblems", "LogDensityProblemsAD", "ProgressMeter", "Random", "Requires", "Setfield", "SimpleUnPack", "Statistics", "StatsBase", "StatsFuns"] -git-tree-sha1 = "acbe805c3078ba0057bb56985248bd66bce016b1" +git-tree-sha1 = "6f6a228808fe00ad05b47d74747c800d3df18acb" uuid = "0bf59076-c3b1-5ca4-86bd-e02cd72cde3d" -version = "0.5.5" +version = "0.6.4" [deps.AdvancedHMC.extensions] AdvancedHMCCUDAExt = "CUDA" @@ -110,16 +110,21 @@ uuid = "ec485272-7323-5ecc-a04f-4719b315124d" version = "0.4.0" [[deps.ArrayInterface]] -deps = ["Adapt", "LinearAlgebra", "Requires", "SparseArrays", "SuiteSparse"] -git-tree-sha1 = "c5aeb516a84459e0318a02507d2261edad97eb75" +deps = ["Adapt", "LinearAlgebra"] +git-tree-sha1 = "017fcb757f8e921fb44ee063a7aafe5f89b86dd1" uuid = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" -version = "7.7.1" +version = "7.18.0" [deps.ArrayInterface.extensions] ArrayInterfaceBandedMatricesExt = "BandedMatrices" ArrayInterfaceBlockBandedMatricesExt = "BlockBandedMatrices" ArrayInterfaceCUDAExt = "CUDA" + ArrayInterfaceCUDSSExt = "CUDSS" + ArrayInterfaceChainRulesCoreExt = "ChainRulesCore" + ArrayInterfaceChainRulesExt = "ChainRules" ArrayInterfaceGPUArraysCoreExt = "GPUArraysCore" + ArrayInterfaceReverseDiffExt = "ReverseDiff" + ArrayInterfaceSparseArraysExt = "SparseArrays" ArrayInterfaceStaticArraysCoreExt = "StaticArraysCore" ArrayInterfaceTrackerExt = "Tracker" @@ -127,10 +132,25 @@ version = "7.7.1" BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" GPUArraysCore = "46192b85-c4d5-4398-a991-12ede77f4527" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" StaticArraysCore = "1e83bf80-4336-4d27-bf5d-d5a4f845583c" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" +[[deps.ArrayLayouts]] +deps = ["FillArrays", "LinearAlgebra"] +git-tree-sha1 = "2bf6e01f453284cb61c312836b4680331ddfc44b" +uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" +version = "1.11.0" +weakdeps = ["SparseArrays"] + + [deps.ArrayLayouts.extensions] + ArrayLayoutsSparseArraysExt = "SparseArrays" + [[deps.Artifacts]] uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" @@ -163,16 +183,17 @@ uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" [[deps.BangBang]] -deps = ["Compat", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires", "Setfield", "Tables"] -git-tree-sha1 = "7aa7ad1682f3d5754e3491bb59b8103cae28e3a3" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] +git-tree-sha1 = "e2144b631226d9eeab2d746ca8880b7ccff504ae" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.3.40" +version = "0.4.3" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" BangBangDataFramesExt = "DataFrames" BangBangStaticArraysExt = "StaticArrays" BangBangStructArraysExt = "StructArrays" + BangBangTablesExt = "Tables" BangBangTypedTablesExt = "TypedTables" [deps.BangBang.weakdeps] @@ -180,6 +201,7 @@ version = "0.3.40" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" + Tables = "bd369af6-aec1-5ad0-b16a-f7cc5008161c" TypedTables = "9d95f2ec-7b3d-5a63-8d20-e2491e220bb9" [[deps.Base64]] @@ -206,6 +228,28 @@ git-tree-sha1 = "f21cfd4950cb9f0587d5067e69405ad2acd27b87" uuid = "62783981-4cbd-42fc-bca8-16325de8dc4b" version = "0.1.6" +[[deps.BlockArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] +git-tree-sha1 = "b406207917260364a2e0287b42e4c6772cb9db88" +uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" +version = "1.3.0" + + [deps.BlockArrays.extensions] + BlockArraysBandedMatricesExt = "BandedMatrices" + + [deps.BlockArrays.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + +[[deps.BracketingNonlinearSolve]] +deps = ["CommonSolve", "ConcreteStructs", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "95cb19c37ea427617e9795655667712f03058d98" +uuid = "70df07ce-3d50-431d-a3e7-ca6ddb60ac1e" +version = "1.1.0" +weakdeps = ["ForwardDiff"] + + [deps.BracketingNonlinearSolve.extensions] + BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" + [[deps.Bzip2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" @@ -319,6 +363,11 @@ git-tree-sha1 = "cda2cfaebb4be89c9084adaca7dd7333369715c5" uuid = "bbf7d656-a473-5ed7-a52c-81e309532950" version = "0.3.1" +[[deps.CommonWorldInvalidations]] +git-tree-sha1 = "ae52d1c52048455e85a387fbee9be553ec2b68d0" +uuid = "f70d9fcc-98c5-4d4a-abd7-e4cdeebd8ca8" +version = "1.0.0" + [[deps.Compat]] deps = ["TOML", "UUIDs"] git-tree-sha1 = "8ae8d32e09f0dcf42a36b90d4e17f5dd2e4c4215" @@ -335,33 +384,31 @@ uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae" version = "1.1.1+0" [[deps.ComponentArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "Functors", "LinearAlgebra", "PackageExtensionCompat", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "bc391f0c19fa242fb6f71794b949e256cfa3772c" +deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] +git-tree-sha1 = "b926f8f322026c3a1d9539253ab111735eb540f8" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.17" +version = "0.15.22" [deps.ComponentArrays.extensions] - ComponentArraysAdaptExt = "Adapt" - ComponentArraysConstructionBaseExt = "ConstructionBase" ComponentArraysGPUArraysExt = "GPUArrays" + ComponentArraysKernelAbstractionsExt = "KernelAbstractions" ComponentArraysOptimisersExt = "Optimisers" + ComponentArraysReactantExt = "Reactant" ComponentArraysRecursiveArrayToolsExt = "RecursiveArrayTools" ComponentArraysReverseDiffExt = "ReverseDiff" ComponentArraysSciMLBaseExt = "SciMLBase" ComponentArraysTrackerExt = "Tracker" - ComponentArraysTruncatedStacktracesExt = "TruncatedStacktraces" ComponentArraysZygoteExt = "Zygote" [deps.ComponentArrays.weakdeps] - Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" - ConstructionBase = "187b0558-2788-49d3-abe0-74a17ed4e7c9" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SciMLBase = "0bca4576-84f4-4d90-8ffe-ffa030f20462" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" - TruncatedStacktraces = "781d530d-4396-4725-bb49-402e4bee1e77" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.CompositeTypes]] @@ -402,22 +449,16 @@ uuid = "88cd18e8-d9cc-4ea6-8889-5259c0d15c8b" version = "0.1.2" [[deps.ConstructionBase]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "d8a9c0b6ac2d9081bf76324b39c78ca3ce4f0c98" +git-tree-sha1 = "76219f1ed5771adbb096743bff43fb5fdd4c1157" uuid = "187b0558-2788-49d3-abe0-74a17ed4e7c9" -version = "1.5.6" -weakdeps = ["IntervalSets", "StaticArrays"] +version = "1.5.8" +weakdeps = ["IntervalSets", "LinearAlgebra", "StaticArrays"] [deps.ConstructionBase.extensions] ConstructionBaseIntervalSetsExt = "IntervalSets" + ConstructionBaseLinearAlgebraExt = "LinearAlgebra" ConstructionBaseStaticArraysExt = "StaticArrays" -[[deps.ContextVariablesX]] -deps = ["Compat", "Logging", "UUIDs"] -git-tree-sha1 = "25cc3803f1030ab855e383129dcd3dc294e322cc" -uuid = "6add18c4-b38d-439d-96f6-d6bc489c04c5" -version = "0.1.3" - [[deps.Contour]] git-tree-sha1 = "439e35b0b36e2e5881738abc8857bd92ad6ff9a8" uuid = "d38c429a-6771-53c6-b99e-75d170b6e991" @@ -496,48 +537,50 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ChainRulesCore", "DataStructures", "DocStringExtensions", "EnumX", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "0d9982e8dee851d519145857e79a17ee33ede154" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "b1e23a7fe7371934d9d538114a7e7166c1d09e05" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.130.0" +version = "6.161.0" [deps.DiffEqBase.extensions] + DiffEqBaseCUDAExt = "CUDA" + DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" + DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" DiffEqBaseMonteCarloMeasurementsExt = "MonteCarloMeasurements" DiffEqBaseReverseDiffExt = "ReverseDiff" + DiffEqBaseSparseArraysExt = "SparseArrays" DiffEqBaseTrackerExt = "Tracker" DiffEqBaseUnitfulExt = "Unitful" - DiffEqBaseZygoteExt = "Zygote" [deps.DiffEqBase.weakdeps] + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.DiffEqCallbacks]] -deps = ["DataStructures", "DiffEqBase", "ForwardDiff", "Functors", "LinearAlgebra", "Markdown", "NLsolve", "Parameters", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "d0b94b3694d55e7eedeee918e7daee9e3b873399" +deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] +git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "2.35.0" - - [deps.DiffEqCallbacks.weakdeps] - OrdinaryDiffEq = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" - Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" +version = "4.1.0" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "880d1fcf95e6492a4e7d65c2866dbdbf6580d4f8" +git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" -version = "5.24.0" +version = "5.24.1" [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" @@ -557,31 +600,61 @@ git-tree-sha1 = "23163d55f885173722d1e4cf0f6110cdbaf7e272" uuid = "b552c78f-8df3-52c6-915a-8e097449b14b" version = "1.15.1" +[[deps.DifferentiationInterface]] +deps = ["ADTypes", "LinearAlgebra"] +git-tree-sha1 = "e7e4ce7787a74d2ec553e7afbeb1bf949caa90ab" +uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" +version = "0.6.30" + + [deps.DifferentiationInterface.extensions] + DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" + DifferentiationInterfaceDiffractorExt = "Diffractor" + DifferentiationInterfaceEnzymeExt = ["EnzymeCore", "Enzyme"] + DifferentiationInterfaceFastDifferentiationExt = "FastDifferentiation" + DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" + DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" + DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceMooncakeExt = "Mooncake" + DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" + DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] + DifferentiationInterfaceSparseArraysExt = "SparseArrays" + DifferentiationInterfaceSparseMatrixColoringsExt = "SparseMatrixColorings" + DifferentiationInterfaceStaticArraysExt = "StaticArrays" + DifferentiationInterfaceSymbolicsExt = "Symbolics" + DifferentiationInterfaceTrackerExt = "Tracker" + DifferentiationInterfaceZygoteExt = ["Zygote", "ForwardDiff"] + + [deps.DifferentiationInterface.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffResults = "163ba53b-c6d8-5494-b064-1a9d43ac40c5" + Diffractor = "9f5e2b26-1114-432f-b630-d3fe2085c51c" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastDifferentiation = "eb9bf01b-bf85-4b60-bf87-ee5de06c00be" + FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" + FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" + PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [[deps.DispatchDoctor]] deps = ["MacroTools", "Preferences"] git-tree-sha1 = "f311fe66bfe4e38b2f1c8d1081f06920092b57aa" uuid = "8d63f2c5-f18a-4cf2-ba9d-b3f60fc568c8" version = "0.4.19" +weakdeps = ["ChainRulesCore", "EnzymeCore"] [deps.DispatchDoctor.extensions] DispatchDoctorChainRulesCoreExt = "ChainRulesCore" DispatchDoctorEnzymeCoreExt = "EnzymeCore" - [deps.DispatchDoctor.weakdeps] - ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - -[[deps.Distances]] -deps = ["LinearAlgebra", "Statistics", "StatsAPI"] -git-tree-sha1 = "c7e3a542b999843086e2f29dac96a618c105be1d" -uuid = "b4f34e82-e78d-54a5-968a-f98e89d6e8f7" -version = "0.10.12" -weakdeps = ["ChainRulesCore", "SparseArrays"] - - [deps.Distances.extensions] - DistancesChainRulesCoreExt = "ChainRulesCore" - DistancesSparseArraysExt = "SparseArrays" - [[deps.Distributed]] deps = ["Random", "Serialization", "Sockets"] uuid = "8ba89e20-285c-5b6f-9357-94700520ee1b" @@ -609,10 +682,16 @@ uuid = "ffbed154-4ef7-542d-bbb7-c09d3a79fcae" version = "0.9.3" [[deps.DomainSets]] -deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"] -git-tree-sha1 = "51b4b84d33ec5e0955b55ff4b748b99ce2c3faa9" +deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] +git-tree-sha1 = "490392af2c7d63183bfa2c8aaa6ab981c5ba7561" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.6.7" +version = "0.7.14" + + [deps.DomainSets.extensions] + DomainSetsMakieExt = "Makie" + + [deps.DomainSets.weakdeps] + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" [[deps.Downloads]] deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"] @@ -620,16 +699,43 @@ uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6" version = "1.6.0" [[deps.DynamicPolynomials]] -deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"] -git-tree-sha1 = "30a1848c4f4fc35d1d4bbbd125650f6a11b5bc6c" +deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Reexport", "Test"] +git-tree-sha1 = "9a3ae38b460449cc9e7dd0cfb059c76028724627" uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07" -version = "0.5.7" +version = "0.6.1" + +[[deps.DynamicQuantities]] +deps = ["DispatchDoctor", "TestItems", "Tricks"] +git-tree-sha1 = "4923007a8e500f13be4c0119554776993c055ece" +uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" +version = "1.4.0" + + [deps.DynamicQuantities.extensions] + DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" + DynamicQuantitiesMeasurementsExt = "Measurements" + DynamicQuantitiesScientificTypesExt = "ScientificTypes" + DynamicQuantitiesUnitfulExt = "Unitful" + + [deps.DynamicQuantities.weakdeps] + LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + ScientificTypes = "321657f4-b219-11e9-178b-2701a2544e81" + Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [[deps.EnumX]] git-tree-sha1 = "bdb1942cd4c45e3c678fd11569d5cccd80976237" uuid = "4e289a0a-7415-4d19-859d-a7e5c4648b56" version = "1.0.4" +[[deps.EnzymeCore]] +git-tree-sha1 = "0cdb7af5c39e92d78a0ee8d0a447d32f7593137e" +uuid = "f151be2c-9106-41f4-ab19-57ee4f262869" +version = "0.8.8" +weakdeps = ["Adapt"] + + [deps.EnzymeCore.extensions] + AdaptExt = "Adapt" + [[deps.EpollShim_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "8a4be429317c42cfae6a7fc03c31bad1970c310d" @@ -648,21 +754,17 @@ git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" version = "2.6.4+3" -[[deps.ExponentialUtilities]] -deps = ["Adapt", "ArrayInterface", "GPUArraysCore", "GenericSchur", "LinearAlgebra", "PrecompileTools", "Printf", "SparseArrays", "libblastrampoline_jll"] -git-tree-sha1 = "cae251c76f353e32d32d76fae2fea655eab652af" -uuid = "d4d017d3-3776-5f7e-afef-a10c40355c18" -version = "1.27.0" -weakdeps = ["StaticArrays"] - - [deps.ExponentialUtilities.extensions] - ExponentialUtilitiesStaticArraysExt = "StaticArrays" - [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" +[[deps.Expronicon]] +deps = ["MLStyle", "Pkg", "TOML"] +git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" +uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" +version = "0.8.5" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" @@ -687,23 +789,11 @@ git-tree-sha1 = "4d81ed14783ec49ce9f2e168208a12ce1815aa25" uuid = "f5851436-0d7a-5f13-b9de-f02708fd171a" version = "3.3.10+3" -[[deps.FLoops]] -deps = ["BangBang", "Compat", "FLoopsBase", "InitialValues", "JuliaVariables", "MLStyle", "Serialization", "Setfield", "Transducers"] -git-tree-sha1 = "0a2e5873e9a5f54abb06418d57a8df689336a660" -uuid = "cc61a311-1640-44b5-9fba-1b764f453329" -version = "0.2.2" - -[[deps.FLoopsBase]] -deps = ["ContextVariablesX"] -git-tree-sha1 = "656f7a6859be8673bf1f35da5670246b923964f7" -uuid = "b9860ae5-e623-471e-878b-f6a53c775ea6" -version = "0.1.1" - [[deps.FastBroadcast]] deps = ["ArrayInterface", "LinearAlgebra", "Polyester", "Static", "StaticArrayInterface", "StrideArraysCore"] -git-tree-sha1 = "a6e756a880fc419c8b41592010aebe6a5ce09136" +git-tree-sha1 = "ab1b34570bcdf272899062e1a56285a53ecaae08" uuid = "7034ab61-46d4-4ed7-9d0f-46aef9175898" -version = "0.2.8" +version = "0.3.5" [[deps.FastClosures]] git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" @@ -716,6 +806,27 @@ git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" uuid = "29a986be-02c6-4525-aec4-84b980013641" version = "2.0.4" +[[deps.FastPower]] +git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" +uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" +version = "1.1.1" + + [deps.FastPower.extensions] + FastPowerEnzymeExt = "Enzyme" + FastPowerForwardDiffExt = "ForwardDiff" + FastPowerMeasurementsExt = "Measurements" + FastPowerMonteCarloMeasurementsExt = "MonteCarloMeasurements" + FastPowerReverseDiffExt = "ReverseDiff" + FastPowerTrackerExt = "Tracker" + + [deps.FastPower.weakdeps] + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" + MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + [[deps.FileWatching]] uuid = "7b1f6079-737a-58dc-b8bc-7a2ca5c1b5ee" @@ -731,6 +842,11 @@ weakdeps = ["PDMats", "SparseArrays", "Statistics"] FillArraysSparseArraysExt = "SparseArrays" FillArraysStatisticsExt = "Statistics" +[[deps.FindFirstFunctions]] +git-tree-sha1 = "670e1d9ceaa4a3161d32fe2d2fb2177f8d78b330" +uuid = "64ca27bc-2ba2-4a57-88aa-44e436879224" +version = "1.4.1" + [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" @@ -755,30 +871,6 @@ git-tree-sha1 = "05882d6995ae5c12bb5f36dd2ed3f61c98cbb172" uuid = "53c48c17-4a7d-5ca2-90c5-79b7896eea93" version = "0.8.5" -[[deps.Flux]] -deps = ["Adapt", "ChainRulesCore", "Compat", "Functors", "LinearAlgebra", "MLUtils", "MacroTools", "NNlib", "OneHotArrays", "Optimisers", "Preferences", "ProgressLogging", "Random", "Reexport", "Setfield", "SparseArrays", "SpecialFunctions", "Statistics", "Zygote"] -git-tree-sha1 = "f3b4e96288e8bee94cd1e230c1a9387d3e03f788" -uuid = "587475ba-b771-5e3f-ad9e-33799f191a9c" -version = "0.14.21" - - [deps.Flux.extensions] - FluxAMDGPUExt = "AMDGPU" - FluxCUDAExt = "CUDA" - FluxCUDAcuDNNExt = ["CUDA", "cuDNN"] - FluxEnzymeExt = "Enzyme" - FluxMPIExt = "MPI" - FluxMPINCCLExt = ["CUDA", "MPI", "NCCL"] - FluxMetalExt = "Metal" - - [deps.Flux.weakdeps] - AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" - CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" - cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" - [[deps.Fontconfig_jll]] deps = ["Artifacts", "Bzip2_jll", "Expat_jll", "FreeType2_jll", "JLLWrappers", "Libdl", "Libuuid_jll", "Zlib_jll"] git-tree-sha1 = "21fac3c77d7b5a9fc03b0ec503aa1a6392c34d2b" @@ -840,28 +932,28 @@ uuid = "0656b61e-2033-5cc2-a64a-77c0f6c09b89" version = "3.4.0+2" [[deps.GPUArrays]] -deps = ["Adapt", "GPUArraysCore", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "Serialization", "Statistics"] -git-tree-sha1 = "85d7fb51afb3def5dcb85ad31c3707795c8bccc1" +deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "Statistics"] +git-tree-sha1 = "0ef97e93edced3d0e713f4cfd031cc9020e022b0" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "9.1.0" +version = "11.2.1" [[deps.GPUArraysCore]] deps = ["Adapt"] -git-tree-sha1 = "2d6ca471a6c7b536127afccfa7564b5b39227fe0" +git-tree-sha1 = "83cf05ab16a73219e5f6bd1bdfa9848fa24ac627" uuid = "46192b85-c4d5-4398-a991-12ede77f4527" -version = "0.1.5" +version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "424c8f76017e39fdfcdbb5935a8e6742244959e8" +git-tree-sha1 = "72280b252e0af4c79576b71434582c116f05c524" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.10" +version = "0.73.11" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "b90934c8cb33920a8dc66736471dc3961b42ec9f" +git-tree-sha1 = "9d5fe5c15d0807d338b1f6d99f0056613b548d5a" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.10+0" +version = "0.73.11+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -915,18 +1007,6 @@ git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2" uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe" version = "1.0.2" -[[deps.Groebner]] -deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"] -git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8" -uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4" -version = "0.5.1" - -[[deps.GroupsCore]] -deps = ["Markdown", "Random"] -git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5" -uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120" -version = "0.4.2" - [[deps.HCubature]] deps = ["Combinatorics", "DataStructures", "LinearAlgebra", "QuadGK", "StaticArrays"] git-tree-sha1 = "19ef9f0cb324eed957b7fe7257ac84e8ed8a48ec" @@ -945,6 +1025,11 @@ git-tree-sha1 = "55c53be97790242c29031e5cd45e8ac296dadda3" uuid = "2e76f6c2-a576-52d4-95c1-20adfe4de566" version = "8.5.0+0" +[[deps.HashArrayMappedTries]] +git-tree-sha1 = "2eaa69a7cab70a52b9687c8bf950a5a93ec895ae" +uuid = "076d061b-32b6-4027-95e0-9a2c6f6d7e74" +version = "0.2.0" + [[deps.Highlights]] deps = ["DocStringExtensions", "InteractiveUtils", "REPL"] git-tree-sha1 = "9e13b8d8b1367d9692a90ea4711b4278e4755c32" @@ -957,6 +1042,22 @@ git-tree-sha1 = "8e070b599339d622e9a081d17230d74a5c473293" uuid = "3e5b6fbb-0976-4d2c-9146-d79de83f2fb0" version = "0.1.17" +[[deps.Hwloc]] +deps = ["CEnum", "Hwloc_jll", "Printf"] +git-tree-sha1 = "6a3d80f31ff87bc94ab22a7b8ec2f263f9a6a583" +uuid = "0e44f5e4-bd66-52a0-8798-143a42290a1d" +version = "3.3.0" +weakdeps = ["AbstractTrees"] + + [deps.Hwloc.extensions] + HwlocTrees = "AbstractTrees" + +[[deps.Hwloc_jll]] +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" +uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" +version = "2.11.2+3" + [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" @@ -1002,34 +1103,30 @@ uuid = "18e54dd8-cb9d-406c-a71d-865a43cbb235" version = "0.1.2" [[deps.Integrals]] -deps = ["CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Reexport", "Requires", "SciMLBase"] -git-tree-sha1 = "44dd71130586e1776fde9041bd81f2e0db15db10" +deps = ["CommonSolve", "HCubature", "LinearAlgebra", "MonteCarloIntegration", "QuadGK", "Random", "Reexport", "SciMLBase"] +git-tree-sha1 = "cfdc4fb8d21c8f596572a59912ae863774123622" uuid = "de52edbc-65ea-441a-8357-d3a637375a31" -version = "3.9.0" +version = "4.5.0" [deps.Integrals.extensions] + IntegralsArblibExt = "Arblib" + IntegralsCubaExt = "Cuba" + IntegralsCubatureExt = "Cubature" IntegralsFastGaussQuadratureExt = "FastGaussQuadrature" IntegralsForwardDiffExt = "ForwardDiff" + IntegralsMCIntegrationExt = "MCIntegration" IntegralsZygoteExt = ["Zygote", "ChainRulesCore"] [deps.Integrals.weakdeps] + Arblib = "fb37089c-8514-4489-9461-98f9c8763369" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Cuba = "8a292aeb-7a57-582c-b821-06e4c11590b1" + Cubature = "667455a9-e2ce-5579-9412-b964f529a492" FastGaussQuadrature = "442a2c76-b920-505d-bb47-c5924d526838" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MCIntegration = "ea1e2de9-7db7-4b42-91ee-0cd1bf6df167" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.IntegralsCuba]] -deps = ["Cuba", "Integrals"] -git-tree-sha1 = "dced02165f61703510f4498c15698e6ac007f6e5" -uuid = "e00cd5f1-6337-4131-8b37-28b2fe4cd6cb" -version = "0.3.0" - -[[deps.IntegralsCubature]] -deps = ["Cubature", "Integrals"] -git-tree-sha1 = "2124372650ff7443d35c475a9cb83d283906a030" -uuid = "c31f79ba-6e32-46d4-a52f-182a8ac42a54" -version = "0.2.3" - [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" @@ -1116,44 +1213,31 @@ git-tree-sha1 = "59cf7ad64f1b0708a4fa4369879d33bad3239b56" uuid = "98e50ef6-434e-11e9-1051-2b60c6c9e899" version = "1.0.62" -[[deps.JuliaVariables]] -deps = ["MLStyle", "NameResolution"] -git-tree-sha1 = "49fb3cb53362ddadb4415e9b73926d6b40709e70" -uuid = "b14d175d-62b4-44ba-8fb7-3064adc8c3ec" -version = "0.2.4" - [[deps.JumpProcesses]] -deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "StaticArrays", "UnPack"] -git-tree-sha1 = "c451feb97251965a9fe40bacd62551a72cc5902c" +deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] +git-tree-sha1 = "ed3b5f80be8fc7d1b0185edb862f2273e02cbec2" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.10.1" +version = "9.14.1" weakdeps = ["FastBroadcast"] - [deps.JumpProcesses.extensions] - JumpProcessFastBroadcastExt = "FastBroadcast" - [[deps.KLU]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "884c2968c2e8e7e6bf5956af88cb46aa745c854b" +git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.4.1" +version = "0.6.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] git-tree-sha1 = "b9a838cd3028785ac23822cded5126b3da394d1a" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" version = "0.9.31" +weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] EnzymeExt = "EnzymeCore" LinearAlgebraExt = "LinearAlgebra" SparseArraysExt = "SparseArrays" - [deps.KernelAbstractions.weakdeps] - EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" - LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" - [[deps.KernelDensity]] deps = ["Distributions", "DocStringExtensions", "FFTW", "Interpolations", "StatsBase"] git-tree-sha1 = "7d703202e65efa1369de1279c162b915e245eed1" @@ -1172,6 +1256,12 @@ git-tree-sha1 = "170b660facf5df5de098d866564877e119141cbd" uuid = "c1c5ebd0-6772-5130-a774-d5fcae4a789d" version = "3.100.2+0" +[[deps.LBFGSB]] +deps = ["L_BFGS_B_jll"] +git-tree-sha1 = "e2e6f53ee20605d0ea2be473480b7480bd5091b5" +uuid = "5be7bae1-8223-5378-bac3-9e7378a2f6e6" +version = "0.4.1" + [[deps.LERC_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "aaafe88dccbd957a8d82f7d05be9b69172e0cee3" @@ -1179,10 +1269,10 @@ uuid = "88015f11-f218-50d7-93a8-a6af411a945d" version = "4.0.1+0" [[deps.LLVM]] -deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Requires", "Unicode"] -git-tree-sha1 = "839c82932db86740ae729779e610f07a1640be9a" +deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] +git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "6.6.3" +version = "9.1.3" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1192,9 +1282,9 @@ version = "6.6.3" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "88b916503aac4fb7f701bb625cd84ca5dd1677bc" +git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.29+0" +version = "0.0.34+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1208,22 +1298,17 @@ git-tree-sha1 = "1c602b1127f4751facb671441ca72715cc95938a" uuid = "dd4b983a-f0e5-5f8d-a1b7-129d4a5fb1ac" version = "2.10.3+0" +[[deps.L_BFGS_B_jll]] +deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl", "Pkg"] +git-tree-sha1 = "77feda930ed3f04b2b0fbb5bea89e69d3677c6b0" +uuid = "81d17ec3-03a1-5e46-b53e-bddc35a13473" +version = "3.0.1+0" + [[deps.LaTeXStrings]] git-tree-sha1 = "dda21b8cbd6a6c40d9d02a73230f9d70fed6918c" uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f" version = "1.4.0" -[[deps.LabelledArrays]] -deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"] -git-tree-sha1 = "d1f981fba6eb3ec393eede4821bca3f2b7592cd4" -uuid = "2ee39098-c373-598a-b85f-a56591580800" -version = "1.15.1" - -[[deps.LambertW]] -git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648" -uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9" -version = "0.4.6" - [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" @@ -1240,12 +1325,6 @@ version = "0.16.5" SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" SymEngine = "123dc426-2d89-5057-bbad-38513e3affd8" -[[deps.LatinHypercubeSampling]] -deps = ["Random", "StableRNGs", "StatsBase", "Test"] -git-tree-sha1 = "825289d43c753c7f1bf9bed334c253e9913997f8" -uuid = "a5e1c1ea-c99a-51d3-a14d-a9a37257b02d" -version = "1.9.0" - [[deps.LatticeRules]] deps = ["Random"] git-tree-sha1 = "7f5b02258a3ca0221a6a9710b0a0a2e8fb4957fe" @@ -1258,6 +1337,24 @@ git-tree-sha1 = "a9eaadb366f5493a5654e843864c13d8b107548c" uuid = "10f19ff3-798f-405d-979b-55457f8fc047" version = "0.1.17" +[[deps.LazyArrays]] +deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] +git-tree-sha1 = "bf3957638b78521f286f3b2ebaa46a475dc74817" +uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" +version = "2.3.2" + + [deps.LazyArrays.extensions] + LazyArraysBandedMatricesExt = "BandedMatrices" + LazyArraysBlockArraysExt = "BlockArrays" + LazyArraysBlockBandedMatricesExt = "BlockBandedMatrices" + LazyArraysStaticArraysExt = "StaticArrays" + + [deps.LazyArrays.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" + BlockBandedMatrices = "ffab5731-97b5-5995-9138-79e8c1846df0" + StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" + [[deps.LazyArtifacts]] deps = ["Artifacts", "Pkg"] uuid = "4af54fe1-eca0-43a8-85a7-787d91b784e3" @@ -1268,12 +1365,6 @@ git-tree-sha1 = "fb6803dafae4a5d62ea5cab204b1e657d9737e7f" uuid = "1d6d02ad-be62-4b6b-8a6d-2f90e265016e" version = "0.2.0" -[[deps.LevyArea]] -deps = ["LinearAlgebra", "Random", "SpecialFunctions"] -git-tree-sha1 = "56513a09b8e0ae6485f34401ea9e2f31357958ec" -uuid = "2d8b4e74-eb68-11e8-0fb9-d5eb67b50637" -version = "1.0.0" - [[deps.LibCURL]] deps = ["LibCURL_jll", "MozillaCACerts_jll"] uuid = "b27032c2-a3e7-50c8-80cd-2d36dbcbfd21" @@ -1349,6 +1440,16 @@ git-tree-sha1 = "e888ad02ce716b319e6bdb985d2ef300e7089889" uuid = "38a345b3-de98-5d2b-a5d3-14cd9215e700" version = "2.40.3+0" +[[deps.LineSearch]] +deps = ["ADTypes", "CommonSolve", "ConcreteStructs", "FastClosures", "LinearAlgebra", "MaybeInplace", "SciMLBase", "SciMLJacobianOperators", "StaticArraysCore"] +git-tree-sha1 = "97d502765cc5cf3a722120f50da03c2474efce04" +uuid = "87fe0de2-c867-4266-b59a-2f0a94fc965b" +version = "0.1.4" +weakdeps = ["LineSearches"] + + [deps.LineSearch.extensions] + LineSearchLineSearchesExt = "LineSearches" + [[deps.LineSearches]] deps = ["LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "Printf"] git-tree-sha1 = "e4c3be53733db1051cc15ecf573b1042b3a712a1" @@ -1360,32 +1461,40 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "Libdl", "LinearAlgebra", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "Requires", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "SuiteSparse", "UnPack"] -git-tree-sha1 = "deb3a7f3dd520fb90e38c4d77fc1b41ee4e68f68" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.7.0" +version = "2.38.0" [deps.LinearSolve.extensions] + LinearSolveBandedMatricesExt = "BandedMatrices" LinearSolveBlockDiagonalsExt = "BlockDiagonals" LinearSolveCUDAExt = "CUDA" + LinearSolveCUDSSExt = "CUDSS" + LinearSolveEnzymeExt = "EnzymeCore" + LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" - LinearSolveMKLExt = "MKL_jll" LinearSolveMetalExt = "Metal" LinearSolvePardisoExt = "Pardiso" + LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" [deps.LinearSolve.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" BlockDiagonals = "0a1fb500-61f7-11e9-3c65-f5ef3456f9f0" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" + EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" - MKL_jll = "856f044c-d86e-5d09-b602-aeab76dc8ba7" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] @@ -1394,13 +1503,14 @@ uuid = "6fdf6af0-433a-55f7-b3ed-c6c6e0b8df7c" version = "2.1.2" [[deps.LogDensityProblemsAD]] -deps = ["DocStringExtensions", "LogDensityProblems", "Requires", "SimpleUnPack"] -git-tree-sha1 = "98cad2db1c46f2fff70a5e305fb42c97a251422a" +deps = ["DocStringExtensions", "LogDensityProblems"] +git-tree-sha1 = "a10e798ac8c44fe1594ad7d6e02898e16e4eafa3" uuid = "996a588d-648d-4e1f-a8f0-a84b347e47b1" -version = "1.9.0" +version = "1.13.0" [deps.LogDensityProblemsAD.extensions] LogDensityProblemsADADTypesExt = "ADTypes" + LogDensityProblemsADDifferentiationInterfaceExt = ["ADTypes", "DifferentiationInterface"] LogDensityProblemsADEnzymeExt = "Enzyme" LogDensityProblemsADFiniteDifferencesExt = "FiniteDifferences" LogDensityProblemsADForwardDiffBenchmarkToolsExt = ["BenchmarkTools", "ForwardDiff"] @@ -1412,6 +1522,7 @@ version = "1.9.0" [deps.LogDensityProblemsAD.weakdeps] ADTypes = "47edcb42-4c32-4615-8424-f2b9edc5f35b" BenchmarkTools = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf" + DifferentiationInterface = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" @@ -1456,86 +1567,99 @@ weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] SpecialFunctionsExt = "SpecialFunctions" [[deps.Lux]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "ChainRulesCore", "ConcreteStructs", "ConstructionBase", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxDeviceUtils", "LuxLib", "MacroTools", "Markdown", "Optimisers", "PrecompileTools", "Random", "Reexport", "Setfield", "SparseArrays", "Statistics", "TruncatedStacktraces", "WeightInitializers"] -git-tree-sha1 = "979b0437f42453b65175c6390314b2fd76eefbd4" +deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] +git-tree-sha1 = "39cc335d2601d4b0d74b209f718e7e3641771448" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "0.5.16" +version = "1.2.3" [deps.Lux.extensions] - LuxChainRulesExt = "ChainRules" LuxComponentArraysExt = "ComponentArrays" - LuxComponentArraysReverseDiffExt = ["ComponentArrays", "ReverseDiff"] - LuxFluxTransformExt = "Flux" - LuxLuxAMDGPUExt = "LuxAMDGPU" - LuxReverseDiffExt = "ReverseDiff" + LuxEnzymeExt = "Enzyme" + LuxFluxExt = "Flux" + LuxLossFunctionsExt = "LossFunctions" + LuxMLUtilsExt = "MLUtils" + LuxMPIExt = "MPI" + LuxMPINCCLExt = ["CUDA", "MPI", "NCCL"] + LuxReactantExt = ["Enzyme", "Reactant"] + LuxReverseDiffExt = ["FunctionWrappers", "ReverseDiff"] + LuxSimpleChainsExt = "SimpleChains" LuxTrackerExt = "Tracker" LuxZygoteExt = "Zygote" [deps.Lux.weakdeps] - ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" Flux = "587475ba-b771-5e3f-ad9e-33799f191a9c" - LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" + FunctionWrappers = "069b7b12-0de2-55c6-9aab-29f3d0a68a2e" + LossFunctions = "30fc2ffe-d236-52d8-8643-a9d8f7c094a7" + MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + NCCL = "3fe64909-d7a1-4096-9b7d-7a0f12cf0f6b" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SimpleChains = "de6bee2f-e2f4-4ec7-b6ed-219cc6f6e9e5" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.LuxCore]] -deps = ["Compat", "DispatchDoctor", "Functors", "Random", "Setfield"] -git-tree-sha1 = "f1312b4295c21e8681f8661d9893fd3ba522d7c9" +deps = ["Compat", "DispatchDoctor", "Random"] +git-tree-sha1 = "9f71aea19be890e429ee21adfeda1e63d01ec610" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "0.1.23" +version = "1.1.0" [deps.LuxCore.extensions] + LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] + LuxCoreArrayInterfaceTrackerExt = ["ArrayInterface", "Tracker"] LuxCoreChainRulesCoreExt = "ChainRulesCore" LuxCoreEnzymeCoreExt = "EnzymeCore" + LuxCoreFunctorsExt = "Functors" LuxCoreMLDataDevicesExt = "MLDataDevices" + LuxCoreReactantExt = "Reactant" + LuxCoreSetfieldExt = "Setfield" [deps.LuxCore.weakdeps] + ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" + Functors = "d9f16b24-f501-4c13-a1f2-28368ffc5196" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" - -[[deps.LuxDeviceUtils]] -deps = ["Adapt", "ChainRulesCore", "Functors", "LuxCore", "Preferences", "Random", "SparseArrays"] -git-tree-sha1 = "cffc2222bf9dc01730f6fc904266f8056abb8e83" -uuid = "34f89e08-e1d5-43b4-8944-0b49ac560553" -version = "0.1.11" - - [deps.LuxDeviceUtils.extensions] - LuxDeviceUtilsFillArraysExt = "FillArrays" - LuxDeviceUtilsLuxAMDGPUExt = "LuxAMDGPU" - LuxDeviceUtilsLuxCUDAExt = "LuxCUDA" - LuxDeviceUtilsMetalExt = "Metal" - LuxDeviceUtilsZygoteExt = "Zygote" - - [deps.LuxDeviceUtils.weakdeps] - FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" - LuxAMDGPU = "83120cb1-ca15-4f04-bf3b-6967d2e6b60b" - LuxCUDA = "d0bbae9a-e099-4d5b-a835-1c6931763bda" - Metal = "dde4c033-4e86-420c-a63e-0dd931031962" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Setfield = "efcf1570-3423-57d1-acb7-fd33fddbac46" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.LuxLib]] -deps = ["ChainRulesCore", "FastClosures", "KernelAbstractions", "LuxCore", "Markdown", "NNlib", "PrecompileTools", "Random", "Reexport", "Statistics"] -git-tree-sha1 = "b1f81a8aa8313c1f1b4cbfb18733db17c023427e" +deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "a9e0f1477ac91623079f7a230f4de46170dc8817" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "0.3.14" +version = "1.3.7" [deps.LuxLib.extensions] - LuxLibForwardDiffExt = "ForwardDiff" + LuxLibAppleAccelerateExt = "AppleAccelerate" + LuxLibBLISBLASExt = "BLISBLAS" + LuxLibCUDAExt = "CUDA" + LuxLibEnzymeExt = "Enzyme" + LuxLibLoopVectorizationExt = "LoopVectorization" + LuxLibMKLExt = "MKL" + LuxLibOctavianExt = ["Octavian", "LoopVectorization"] LuxLibReverseDiffExt = "ReverseDiff" + LuxLibSLEEFPiratesExt = "SLEEFPirates" LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] LuxLibTrackerExt = "Tracker" - LuxLibTrackercuDNNExt = ["CUDA", "Tracker", "cuDNN"] LuxLibcuDNNExt = ["CUDA", "cuDNN"] [deps.LuxLib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + AppleAccelerate = "13e28ba4-7ad8-5781-acae-3021b1ed3924" + BLISBLAS = "6f275bd8-fec0-4d39-945b-7e95a765fa1e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" - ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" + MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" + Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" @@ -1557,6 +1681,50 @@ git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" version = "2024.2.0+0" +[[deps.MLDataDevices]] +deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] +git-tree-sha1 = "85b47bc5a8bf0c886286638585df3bec7c9f8269" +uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" +version = "1.5.3" + + [deps.MLDataDevices.extensions] + MLDataDevicesAMDGPUExt = "AMDGPU" + MLDataDevicesCUDAExt = "CUDA" + MLDataDevicesChainRulesCoreExt = "ChainRulesCore" + MLDataDevicesChainRulesExt = "ChainRules" + MLDataDevicesFillArraysExt = "FillArrays" + MLDataDevicesGPUArraysExt = "GPUArrays" + MLDataDevicesMLUtilsExt = "MLUtils" + MLDataDevicesMetalExt = ["GPUArrays", "Metal"] + MLDataDevicesOneHotArraysExt = "OneHotArrays" + MLDataDevicesReactantExt = "Reactant" + MLDataDevicesRecursiveArrayToolsExt = "RecursiveArrayTools" + MLDataDevicesReverseDiffExt = "ReverseDiff" + MLDataDevicesSparseArraysExt = "SparseArrays" + MLDataDevicesTrackerExt = "Tracker" + MLDataDevicesZygoteExt = "Zygote" + MLDataDevicescuDNNExt = ["CUDA", "cuDNN"] + MLDataDevicesoneAPIExt = ["GPUArrays", "oneAPI"] + + [deps.MLDataDevices.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" + CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OneHotArrays = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" + [[deps.MLJModelInterface]] deps = ["Random", "ScientificTypesBase", "StatisticalTraits"] git-tree-sha1 = "ceaff6618408d0e412619321ae43b33b40c1a733" @@ -1568,12 +1736,6 @@ git-tree-sha1 = "bc38dff0548128765760c79eb7388a4b37fae2c8" uuid = "d8e11817-5142-5d16-987a-aa16d5891078" version = "0.4.17" -[[deps.MLUtils]] -deps = ["ChainRulesCore", "Compat", "DataAPI", "DelimitedFiles", "FLoops", "NNlib", "Random", "ShowCases", "SimpleTraits", "Statistics", "StatsBase", "Tables", "Transducers"] -git-tree-sha1 = "7940c0af802586b97009f254aa6065000a16fa1d" -uuid = "f1d291b0-491e-4a28-83b9-f70985020b54" -version = "0.4.5" - [[deps.MacroTools]] git-tree-sha1 = "72aebe0b5051e5143a079a4685a46da330a40472" uuid = "1914dd2f-81c6-5fcd-8719-6d5c9610ff09" @@ -1588,6 +1750,16 @@ version = "0.1.8" deps = ["Base64"] uuid = "d6f4376e-aef5-505a-96c1-9c027394607a" +[[deps.MaybeInplace]] +deps = ["ArrayInterface", "LinearAlgebra", "MacroTools"] +git-tree-sha1 = "54e2fdc38130c05b42be423e90da3bade29b74bd" +uuid = "bb5d69b7-63fc-4a16-80bd-7e42200c7bdb" +version = "0.1.4" +weakdeps = ["SparseArrays"] + + [deps.MaybeInplace.extensions] + MaybeInplaceSparseArraysExt = "SparseArrays" + [[deps.MbedTLS]] deps = ["Dates", "MbedTLS_jll", "MozillaCACerts_jll", "NetworkOptions", "Random", "Sockets"] git-tree-sha1 = "c067a280ddc25f196b5e7df3877c6b226d390aaf" @@ -1605,10 +1777,10 @@ uuid = "442fdcdd-2543-5da2-b0f3-8c86c306513e" version = "0.3.2" [[deps.MicroCollections]] -deps = ["BangBang", "InitialValues", "Setfield"] -git-tree-sha1 = "629afd7d10dbc6935ec59b32daeb33bc4460a42e" +deps = ["Accessors", "BangBang", "InitialValues"] +git-tree-sha1 = "44d32db644e84c75dab479f1bc15ee76a1a3618f" uuid = "128add7d-3638-4c79-886c-908ea0c25c34" -version = "0.1.4" +version = "0.2.0" [[deps.Missings]] deps = ["DataAPI"] @@ -1620,22 +1792,32 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "Combinatorics", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "FunctionWrappersWrappers", "Graphs", "IfElse", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "LabelledArrays", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "MacroTools", "NaNMath", "OrdinaryDiffEq", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "87a45c453295c1640a1fd011a85e42fda7a78d15" +deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "940443517fbaa6141e058c90573dc153093acfbb" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "8.70.0" +version = "9.61.0" [deps.ModelingToolkit.extensions] + MTKBifurcationKitExt = "BifurcationKit" + MTKChainRulesCoreExt = "ChainRulesCore" MTKDeepDiffsExt = "DeepDiffs" + MTKHomotopyContinuationExt = "HomotopyContinuation" + MTKInfiniteOptExt = "InfiniteOpt" + MTKLabelledArraysExt = "LabelledArrays" [deps.ModelingToolkit.weakdeps] + BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" + HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" + InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" [[deps.MonteCarloIntegration]] -deps = ["Distributions", "Random"] -git-tree-sha1 = "3f78ebce296c927d5c854e83cccdb5dcb1845629" +deps = ["Distributions", "QuasiMonteCarlo", "Random"] +git-tree-sha1 = "722ad522068d31954b4a976b66a26aeccbf509ed" uuid = "4886b29c-78c9-11e9-0a6e-41e1f4161f7b" -version = "0.0.3" +version = "0.2.0" [[deps.MonteCarloMeasurements]] deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] @@ -1690,12 +1872,6 @@ git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c" uuid = "d41bc354-129a-5804-8e4c-c37616107c6c" version = "7.8.3" -[[deps.NLsolve]] -deps = ["Distances", "LineSearches", "LinearAlgebra", "NLSolversBase", "Printf", "Reexport"] -git-tree-sha1 = "019f12e9a1a7880459d0173c182e6a99365d7ac1" -uuid = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" -version = "4.5.1" - [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] git-tree-sha1 = "bdc9d30f151590aca0af22690f5ab7dc18a551cb" @@ -1724,12 +1900,6 @@ git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" version = "1.0.3" -[[deps.NameResolution]] -deps = ["PrettyPrint"] -git-tree-sha1 = "1a0fa0e9613f46c9b8c11eee38ebb4f590013c5e" -uuid = "71a1bf82-56d0-4bbc-8a3c-48b961074391" -version = "0.1.5" - [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" uuid = "c020b1a1-e9b0-503a-9c33-f039bfc54a85" @@ -1740,16 +1910,98 @@ uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" [[deps.NeuralPDE]] -deps = ["Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "DiffEqBase", "DiffEqNoiseProcess", "Distributions", "DocStringExtensions", "DomainSets", "Flux", "ForwardDiff", "Functors", "Integrals", "IntegralsCubature", "LinearAlgebra", "LogDensityProblems", "Lux", "MCMCChains", "ModelingToolkit", "MonteCarloMeasurements", "Optim", "Optimisers", "Optimization", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "StochasticDiffEq", "SymbolicUtils", "Symbolics", "UnPack", "Zygote"] -git-tree-sha1 = "901fc1818af7c0bd12712f8532d324f27ef6d3e6" +deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] +git-tree-sha1 = "eaf81ffa96c0b44ebbce6f396055d9ff1052715f" uuid = "315f7962-48a3-4962-8226-d0f33b1235f0" -version = "5.9.0" +version = "5.17.0" + + [deps.NeuralPDE.extensions] + NeuralPDETensorBoardLoggerExt = "TensorBoardLogger" + + [deps.NeuralPDE.weakdeps] + TensorBoardLogger = "899adc3e-224a-11e9-021f-63837185c80f" [[deps.NonlinearSolve]] -deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "EnumX", "FiniteDiff", "ForwardDiff", "LineSearches", "LinearAlgebra", "LinearSolve", "PrecompileTools", "RecursiveArrayTools", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseDiffTools", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "445a7ba86794e1f8ee9da3b3b7becf284e2625fd" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] +git-tree-sha1 = "d0caebdb5a31e1a11ca9f7f189cdbf341ac89f0e" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "2.1.0" +version = "4.3.0" + + [deps.NonlinearSolve.extensions] + NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" + NonlinearSolveFixedPointAccelerationExt = "FixedPointAcceleration" + NonlinearSolveLeastSquaresOptimExt = "LeastSquaresOptim" + NonlinearSolveMINPACKExt = "MINPACK" + NonlinearSolveNLSolversExt = "NLSolvers" + NonlinearSolveNLsolveExt = ["NLsolve", "LineSearches"] + NonlinearSolvePETScExt = ["PETSc", "MPI"] + NonlinearSolveSIAMFANLEquationsExt = "SIAMFANLEquations" + NonlinearSolveSpeedMappingExt = "SpeedMapping" + NonlinearSolveSundialsExt = "Sundials" + + [deps.NonlinearSolve.weakdeps] + FastLevenbergMarquardt = "7a0df574-e128-4d35-8cbd-3d84502bf7ce" + FixedPointAcceleration = "817d07cb-a79a-5c30-9a31-890123675176" + LeastSquaresOptim = "0fc2ff8b-aaa3-5acd-a817-1944a5e08891" + LineSearches = "d3d80556-e9d4-5f37-9878-2ab0fcc64255" + MINPACK = "4854310b-de5a-5eb6-a2a5-c1dee2bd17f9" + MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" + NLSolvers = "337daf1e-9722-11e9-073e-8b9effe078ba" + NLsolve = "2774e3e8-f4cf-5e23-947b-6d7e65073b56" + PETSc = "ace2c81b-2b5f-4b1e-a30d-d662738edfe0" + SIAMFANLEquations = "084e46ad-d928-497d-ad5e-07fa361a48c4" + SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412" + Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4" + +[[deps.NonlinearSolveBase]] +deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] +git-tree-sha1 = "5bca24ce7b0c034dcbdc6ad6d658b02e0eed566e" +uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" +version = "1.4.0" + + [deps.NonlinearSolveBase.extensions] + NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" + NonlinearSolveBaseDiffEqBaseExt = "DiffEqBase" + NonlinearSolveBaseForwardDiffExt = "ForwardDiff" + NonlinearSolveBaseLineSearchExt = "LineSearch" + NonlinearSolveBaseLinearSolveExt = "LinearSolve" + NonlinearSolveBaseSparseArraysExt = "SparseArrays" + NonlinearSolveBaseSparseMatrixColoringsExt = "SparseMatrixColorings" + + [deps.NonlinearSolveBase.weakdeps] + BandedMatrices = "aae01518-5342-5314-be14-df237901396f" + DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + LineSearch = "87fe0de2-c867-4266-b59a-2f0a94fc965b" + LinearSolve = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + SparseMatrixColorings = "0a514795-09f3-496d-8182-132a7b665d35" + +[[deps.NonlinearSolveFirstOrder]] +deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "a1ea35ab0bcc99753e26d574ba1e339f19d100fa" +uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" +version = "1.2.0" + +[[deps.NonlinearSolveQuasiNewton]] +deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] +git-tree-sha1 = "8f14b848afcfc0a2941cd3cca1bef04c987465bb" +uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" +version = "1.1.0" +weakdeps = ["ForwardDiff"] + + [deps.NonlinearSolveQuasiNewton.extensions] + NonlinearSolveQuasiNewtonForwardDiffExt = "ForwardDiff" + +[[deps.NonlinearSolveSpectralMethods]] +deps = ["CommonSolve", "ConcreteStructs", "DiffEqBase", "LineSearch", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase"] +git-tree-sha1 = "f28b1ab17b5f15eb2b174eaf8813cf17f0b3e6c0" +uuid = "26075421-4e9a-44e1-8bd1-420ed7ad02b2" +version = "1.1.0" +weakdeps = ["ForwardDiff"] + + [deps.NonlinearSolveSpectralMethods.extensions] + NonlinearSolveSpectralMethodsForwardDiffExt = "ForwardDiff" [[deps.OffsetArrays]] git-tree-sha1 = "5e1897147d1ff8d98883cda2be2187dcf57d8f0c" @@ -1766,12 +2018,6 @@ git-tree-sha1 = "887579a3eb005446d514ab7aeac5d1d027658b8f" uuid = "e7412a2a-1a6e-54c0-be00-318e2571c051" version = "1.3.5+1" -[[deps.OneHotArrays]] -deps = ["Adapt", "ChainRulesCore", "Compat", "GPUArraysCore", "LinearAlgebra", "NNlib"] -git-tree-sha1 = "c8c7f6bfabe581dc40b580313a75f1ecce087e27" -uuid = "0b1bfda6-eb8a-41d2-88d8-f5af5cad476f" -version = "0.2.6" - [[deps.OpenBLAS_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "Libdl"] uuid = "4536629a-c528-5b80-bd46-f80d51c5b363" @@ -1819,43 +2065,50 @@ uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" version = "0.3.4" [[deps.Optimization]] -deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LinearAlgebra", "Logging", "LoggingExtras", "Pkg", "Printf", "ProgressLogging", "Reexport", "Requires", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "1aa7ffea6e171167e9cae620d749e16d5874414a" +deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] +git-tree-sha1 = "4b59eef21418fbdf28afbe2d7e945d8efbe5057d" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "3.19.3" +version = "4.0.5" - [deps.Optimization.extensions] +[[deps.OptimizationBase]] +deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "Requires", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] +git-tree-sha1 = "9e8569bc1c511c425fdc63f7ee41f2da057f8662" +uuid = "bca83a33-5cc9-4baa-983d-23429ab6bcbb" +version = "2.4.0" + + [deps.OptimizationBase.extensions] OptimizationEnzymeExt = "Enzyme" OptimizationFiniteDiffExt = "FiniteDiff" OptimizationForwardDiffExt = "ForwardDiff" + OptimizationMLDataDevicesExt = "MLDataDevices" + OptimizationMLUtilsExt = "MLUtils" OptimizationMTKExt = "ModelingToolkit" OptimizationReverseDiffExt = "ReverseDiff" - OptimizationSparseDiffExt = ["SparseDiffTools", "Symbolics", "ReverseDiff"] - OptimizationTrackerExt = "Tracker" + OptimizationSymbolicAnalysisExt = "SymbolicAnalysis" OptimizationZygoteExt = "Zygote" - [deps.Optimization.weakdeps] + [deps.OptimizationBase.weakdeps] Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" + MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" + SymbolicAnalysis = "4297ee4d-0239-47d8-ba5d-195ecdf594fe" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.OptimizationOptimJL]] -deps = ["Optim", "Optimization", "Reexport", "SparseArrays"] -git-tree-sha1 = "bea24fb320d58cb639e3cbc63f8eedde6c667bd3" +deps = ["Optim", "Optimization", "PrecompileTools", "Reexport", "SparseArrays"] +git-tree-sha1 = "980ec7190741db164a2923dc42d6f1e7ce2cc434" uuid = "36348300-93cb-4f02-beb5-3c3902f8871e" -version = "0.1.14" +version = "0.4.1" [[deps.OptimizationOptimisers]] deps = ["Optimisers", "Optimization", "Printf", "ProgressLogging", "Reexport"] -git-tree-sha1 = "69143c5e9b1533e9eab8d64cfe7813dfaf66c521" +git-tree-sha1 = "4a2c2d4bb4eb6bbab8e2871657372cf743ff50d5" uuid = "42dfb2eb-d2b4-4451-abcd-913932933ac1" -version = "0.1.6" +version = "0.3.7" [[deps.Opus_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1868,12 +2121,6 @@ git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" version = "1.7.0" -[[deps.OrdinaryDiffEq]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "ExponentialUtilities", "FastBroadcast", "FastClosures", "FiniteDiff", "ForwardDiff", "FunctionWrappersWrappers", "IfElse", "InteractiveUtils", "LineSearches", "LinearAlgebra", "LinearSolve", "Logging", "LoopVectorization", "MacroTools", "MuladdMacro", "NLsolve", "NonlinearSolve", "Polyester", "PreallocationTools", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLNLSolve", "SciMLOperators", "SimpleNonlinearSolve", "SimpleUnPack", "SparseArrays", "SparseDiffTools", "StaticArrayInterface", "StaticArrays", "TruncatedStacktraces"] -git-tree-sha1 = "f0f43037c0ba045e96f32d65858eb825a211b817" -uuid = "1dea7af3-3e70-54e6-95c3-0bf5283fa5ed" -version = "6.58.2" - [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] uuid = "efcefdf7-47ab-520b-bdef-62a2eaa19f15" @@ -1885,12 +2132,6 @@ git-tree-sha1 = "966b85253e959ea89c53a9abebbf2e964fbf593b" uuid = "90014a1f-27ba-587c-ab20-58faa44d9150" version = "0.11.32" -[[deps.PackageExtensionCompat]] -git-tree-sha1 = "fb28e33b8a95c4cee25ce296c817d89cc2e53518" -uuid = "65ce6f38-6b18-4e1d-a461-8949797d7930" -version = "1.0.2" -weakdeps = ["Requires", "TOML"] - [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" @@ -1909,12 +2150,6 @@ git-tree-sha1 = "8489905bcdbcfac64d1daa51ca07c0d8f0283821" uuid = "69de0a69-1ddd-5017-9359-2bf0b02dc9f0" version = "2.8.1" -[[deps.PartialFunctions]] -deps = ["MacroTools"] -git-tree-sha1 = "47b49a4dbc23b76682205c646252c0f9e1eb75af" -uuid = "570af359-4316-4cb7-8c74-252c00c2016b" -version = "1.2.0" - [[deps.Pipe]] git-tree-sha1 = "6842804e7867b115ca9de748a0cf6b364523c16d" uuid = "b98c9c47-44ae-5843-9183-064241ee97a0" @@ -2011,11 +2246,6 @@ git-tree-sha1 = "9306f6085165d270f7e3db02af26a400d580f5c6" uuid = "21216c6a-2e73-6563-6e65-726566657250" version = "1.4.3" -[[deps.PrettyPrint]] -git-tree-sha1 = "632eb4abab3449ab30c5e1afaa874f0b98b586e4" -uuid = "8162dcfd-2161-5ef2-ae6c-7681170c5f98" -version = "0.2.0" - [[deps.PrettyTables]] deps = ["Crayons", "LaTeXStrings", "Markdown", "PrecompileTools", "Printf", "Reexport", "StringManipulation", "Tables"] git-tree-sha1 = "1101cd475833706e4d0e7b122218257178f48f34" @@ -2086,10 +2316,14 @@ version = "2.11.1" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" [[deps.QuasiMonteCarlo]] -deps = ["Distributions", "LatinHypercubeSampling", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Sobol", "StatsBase"] -git-tree-sha1 = "b10f1a5345f14f6431712661925ae2d8c02780ee" +deps = ["Accessors", "ConcreteStructs", "LatticeRules", "LinearAlgebra", "Primes", "Random", "Requires", "Sobol", "StatsBase"] +git-tree-sha1 = "cc086f8485bce77b6187141e1413c3b55f9a4341" uuid = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" -version = "0.2.19" +version = "0.3.3" +weakdeps = ["Distributions"] + + [deps.QuasiMonteCarlo.extensions] + QuasiMonteCarloDistributionsExt = "Distributions" [[deps.REPL]] deps = ["InteractiveUtils", "Markdown", "Sockets", "Unicode"] @@ -2105,12 +2339,6 @@ git-tree-sha1 = "4743b43e5a9c4a2ede372de7061eed81795b12e7" uuid = "74087812-796a-5b5d-8853-05524746bad3" version = "1.7.0" -[[deps.RandomExtensions]] -deps = ["Random", "SparseArrays"] -git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49" -uuid = "fb686558-2515-59ef-acaa-46db3789a887" -version = "0.4.4" - [[deps.RandomNumbers]] deps = ["Random"] git-tree-sha1 = "c6ec94d2aaba1ab2ff983052cf6a606ca5985902" @@ -2151,20 +2379,30 @@ uuid = "01d81517-befc-4cb6-b9ec-a95719d0359c" version = "0.6.12" [[deps.RecursiveArrayTools]] -deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "Requires", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "d7087c013e8a496ff396bae843b1e16d9a30ede8" +deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] +git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "2.38.10" +version = "3.27.4" [deps.RecursiveArrayTools.extensions] + RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" + RecursiveArrayToolsForwardDiffExt = "ForwardDiff" RecursiveArrayToolsMeasurementsExt = "Measurements" RecursiveArrayToolsMonteCarloMeasurementsExt = "MonteCarloMeasurements" + RecursiveArrayToolsReverseDiffExt = ["ReverseDiff", "Zygote"] + RecursiveArrayToolsSparseArraysExt = ["SparseArrays"] + RecursiveArrayToolsStructArraysExt = "StructArrays" RecursiveArrayToolsTrackerExt = "Tracker" RecursiveArrayToolsZygoteExt = "Zygote" [deps.RecursiveArrayTools.weakdeps] + FastBroadcast = "7034ab61-46d4-4ed7-9d0f-46aef9175898" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" MonteCarloMeasurements = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" @@ -2215,16 +2453,16 @@ git-tree-sha1 = "04c968137612c4a5629fa531334bb81ad5680f00" uuid = "7e49a35a-f44a-4d26-94aa-eba1b4ca6b47" version = "0.5.13" +[[deps.SCCNonlinearSolve]] +deps = ["CommonSolve", "PrecompileTools", "Reexport", "SciMLBase", "SymbolicIndexingInterface"] +git-tree-sha1 = "0caf35e2204c9045ca203b147b5dac4fa8e1cf20" +uuid = "9dfe8606-65a1-4bb3-9748-cb89d1561431" +version = "1.0.0" + [[deps.SHA]] uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce" version = "0.7.0" -[[deps.SIMD]] -deps = ["PrecompileTools"] -git-tree-sha1 = "fea870727142270bdf7624ad675901a1ee3b4c87" -uuid = "fdea26ae-647d-5447-a871-4b548cad5224" -version = "3.7.1" - [[deps.SIMDTypes]] git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c" uuid = "94e857df-77ce-4151-89e5-788b33177be4" @@ -2237,14 +2475,29 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "ArrayInterface", "ChainRulesCore", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FillArrays", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables", "TruncatedStacktraces", "ZygoteRules"] -git-tree-sha1 = "916b8a94c0d61fa5f7c5295649d3746afb866aff" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "dbf501ba9edc97bd4a03e69b3186f04721160c65" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "1.98.1" -weakdeps = ["Zygote"] +version = "2.71.2" [deps.SciMLBase.extensions] - ZygoteExt = "Zygote" + SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMakieExt = "Makie" + SciMLBasePartialFunctionsExt = "PartialFunctions" + SciMLBasePyCallExt = "PyCall" + SciMLBasePythonCallExt = "PythonCall" + SciMLBaseRCallExt = "RCall" + SciMLBaseZygoteExt = "Zygote" + + [deps.SciMLBase.weakdeps] + ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" + PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" + PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" + PythonCall = "6099a3de-0909-46bc-b1f4-468b9a2dfc0d" + RCall = "6f49c342-dc21-5d91-9882-a32aef131414" + Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" [[deps.SciMLBenchmarks]] deps = ["Git", "IJulia", "InteractiveUtils", "Markdown", "Pkg", "Weave"] @@ -2252,11 +2505,11 @@ git-tree-sha1 = "f4076dd5a103010d48bb6c4e50c5526f6622fa96" uuid = "31c91b34-3c75-11e9-0341-95557aab0344" version = "0.1.3" -[[deps.SciMLNLSolve]] -deps = ["DiffEqBase", "LineSearches", "NLsolve", "Reexport", "SciMLBase"] -git-tree-sha1 = "765b788339abd7d983618c09cfc0192e2b6b15fd" -uuid = "e9a6253c-8580-4d32-9898-8661bb511710" -version = "0.1.9" +[[deps.SciMLJacobianOperators]] +deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "ConstructionBase", "DifferentiationInterface", "FastClosures", "LinearAlgebra", "SciMLBase", "SciMLOperators"] +git-tree-sha1 = "f66048bb969e67bd7d1bdd03cd0b81219642bbd0" +uuid = "19f34311-ddf3-4b8b-af20-060888a46c0e" +version = "0.1.1" [[deps.SciMLOperators]] deps = ["Accessors", "ArrayInterface", "DocStringExtensions", "LinearAlgebra", "MacroTools"] @@ -2269,11 +2522,23 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] SciMLOperatorsSparseArraysExt = "SparseArrays" SciMLOperatorsStaticArraysCoreExt = "StaticArraysCore" +[[deps.SciMLStructures]] +deps = ["ArrayInterface"] +git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" +uuid = "53ae85a6-f571-4167-b2af-e1d143709226" +version = "1.6.1" + [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" uuid = "30f210dd-8aff-4c5f-94ba-8e64358c1161" version = "3.0.0" +[[deps.ScopedValues]] +deps = ["HashArrayMappedTries", "Logging"] +git-tree-sha1 = "1147f140b4c8ddab224c94efa9569fc23d63ab44" +uuid = "7e506255-f358-4e82-b7e4-beb19740aa63" +version = "1.3.0" + [[deps.Scratch]] deps = ["Dates"] git-tree-sha1 = "3bac05bc7e74a75fd9cba4295cde4045d9fe2386" @@ -2293,11 +2558,6 @@ version = "1.1.1" deps = ["Distributed", "Mmap", "Random", "Serialization"] uuid = "1a1011a3-84de-559e-8e89-a11a2f7dc383" -[[deps.ShowCases]] -git-tree-sha1 = "7f534ad62ab2bd48591bdeac81994ea8c445e4a5" -uuid = "605ecd9f-84a6-4c9e-81e2-4798472b76a3" -version = "0.1.0" - [[deps.Showoff]] deps = ["Dates", "Grisu"] git-tree-sha1 = "91eddf657aca81df9ae6ceb20b959ae5653ad1de" @@ -2310,14 +2570,22 @@ uuid = "777ac1f9-54b0-4bf8-805c-2214025038e7" version = "1.2.0" [[deps.SimpleNonlinearSolve]] -deps = ["ArrayInterface", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "PackageExtensionCompat", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "15ff97fa4881133caa324dacafe28b5ac47ad8a2" +deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "Setfield", "StaticArraysCore"] +git-tree-sha1 = "a3868a6add9f5989d1f4bd21de0333ef89fb9d9f" uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7" -version = "0.1.23" -weakdeps = ["NNlib"] +version = "2.1.0" [deps.SimpleNonlinearSolve.extensions] - SimpleNonlinearSolveNNlibExt = "NNlib" + SimpleNonlinearSolveChainRulesCoreExt = "ChainRulesCore" + SimpleNonlinearSolveDiffEqBaseExt = "DiffEqBase" + SimpleNonlinearSolveReverseDiffExt = "ReverseDiff" + SimpleNonlinearSolveTrackerExt = "Tracker" + + [deps.SimpleNonlinearSolve.weakdeps] + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + DiffEqBase = "2b5f629d-d688-5b77-993f-72d75c75574e" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" + Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.SimpleTraits]] deps = ["InteractiveUtils", "MacroTools"] @@ -2356,25 +2624,25 @@ deps = ["Libdl", "LinearAlgebra", "Random", "Serialization", "SuiteSparse_jll"] uuid = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" version = "1.10.0" -[[deps.SparseDiffTools]] -deps = ["ADTypes", "Adapt", "ArrayInterface", "Compat", "DataStructures", "FiniteDiff", "ForwardDiff", "Graphs", "LinearAlgebra", "PackageExtensionCompat", "Random", "Reexport", "SciMLOperators", "Setfield", "SparseArrays", "StaticArrayInterface", "StaticArrays", "Tricks", "UnPack", "VertexSafeGraphs"] -git-tree-sha1 = "cce98ad7c896e52bb0eded174f02fc2a29c38477" -uuid = "47a9eef4-7e08-11e9-0b38-333d64bd3804" -version = "2.18.0" +[[deps.SparseConnectivityTracer]] +deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "010b3c44301805d1ede9159f449a351d61172aa6" +uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" +version = "0.6.9" - [deps.SparseDiffTools.extensions] - SparseDiffToolsEnzymeExt = "Enzyme" - SparseDiffToolsPolyesterExt = "Polyester" - SparseDiffToolsPolyesterForwardDiffExt = "PolyesterForwardDiff" - SparseDiffToolsSymbolicsExt = "Symbolics" - SparseDiffToolsZygoteExt = "Zygote" + [deps.SparseConnectivityTracer.extensions] + SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" + SparseConnectivityTracerLogExpFunctionsExt = "LogExpFunctions" + SparseConnectivityTracerNNlibExt = "NNlib" + SparseConnectivityTracerNaNMathExt = "NaNMath" + SparseConnectivityTracerSpecialFunctionsExt = "SpecialFunctions" - [deps.SparseDiffTools.weakdeps] - Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" - Polyester = "f517fe37-dbe3-4b94-8317-1923a5111588" - PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" - Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" - Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" + [deps.SparseConnectivityTracer.weakdeps] + DataInterpolations = "82cc6244-b520-54b8-b5a6-8a565e85f1d0" + LogExpFunctions = "2ab3a3ac-af41-5b50-aa03-7779005ae688" + NNlib = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" + NaNMath = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" [[deps.SparseInverseSubset]] deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse"] @@ -2382,6 +2650,16 @@ git-tree-sha1 = "52962839426b75b3021296f7df242e40ecfc0852" uuid = "dc90abb0-5640-4711-901d-7e5b23a2fada" version = "0.1.2" +[[deps.SparseMatrixColorings]] +deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] +git-tree-sha1 = "76b44c879661552d64f382acf66faa29ab56b3d9" +uuid = "0a514795-09f3-496d-8182-132a7b665d35" +version = "0.4.10" +weakdeps = ["Colors"] + + [deps.SparseMatrixColorings.extensions] + SparseMatrixColoringsColorsExt = "Colors" + [[deps.Sparspak]] deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" @@ -2411,10 +2689,10 @@ uuid = "860ef19b-820b-49d6-a774-d7a799459cd3" version = "1.0.2" [[deps.Static]] -deps = ["IfElse"] -git-tree-sha1 = "d2fdac9ff3906e27f7a618d47b676941baa6c80c" +deps = ["CommonWorldInvalidations", "IfElse", "PrecompileTools"] +git-tree-sha1 = "87d51a3ee9a4b0d2fe054bdd3fc2436258db2603" uuid = "aedffcd0-7271-4cad-89d0-dc628f76c6d3" -version = "0.8.10" +version = "1.1.1" [[deps.StaticArrayInterface]] deps = ["ArrayInterface", "Compat", "IfElse", "LinearAlgebra", "PrecompileTools", "Static"] @@ -2461,10 +2739,10 @@ uuid = "82ae8749-77ed-4fe6-ae5f-f523153014b0" version = "1.7.0" [[deps.StatsBase]] -deps = ["DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] -git-tree-sha1 = "d1bf48bfcc554a3761a133fe3a9bb01488e06916" +deps = ["AliasTables", "DataAPI", "DataStructures", "LinearAlgebra", "LogExpFunctions", "Missings", "Printf", "Random", "SortingAlgorithms", "SparseArrays", "Statistics", "StatsAPI"] +git-tree-sha1 = "29321314c920c26684834965ec2ce0dacc9cf8e5" uuid = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91" -version = "0.33.21" +version = "0.34.4" [[deps.StatsFuns]] deps = ["HypergeometricFunctions", "IrrationalConstants", "LogExpFunctions", "Reexport", "Rmath", "SpecialFunctions"] @@ -2477,12 +2755,6 @@ weakdeps = ["ChainRulesCore", "InverseFunctions"] StatsFunsChainRulesCoreExt = "ChainRulesCore" StatsFunsInverseFunctionsExt = "InverseFunctions" -[[deps.StochasticDiffEq]] -deps = ["Adapt", "ArrayInterface", "DataStructures", "DiffEqBase", "DiffEqNoiseProcess", "DocStringExtensions", "FillArrays", "FiniteDiff", "ForwardDiff", "JumpProcesses", "LevyArea", "LinearAlgebra", "Logging", "MuladdMacro", "NLsolve", "OrdinaryDiffEq", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SparseArrays", "SparseDiffTools", "StaticArrays", "UnPack"] -git-tree-sha1 = "b341540a647b39728b6d64eaeda82178e848f76e" -uuid = "789caeaf-c7a9-5a7d-9973-96adeb23e2a0" -version = "6.62.0" - [[deps.StrideArraysCore]] deps = ["ArrayInterface", "CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "ManualMemory", "SIMDTypes", "Static", "StaticArrayInterface", "ThreadingUtilities"] git-tree-sha1 = "f35f6ab602df8413a50c4a25ca14de821e8605fb" @@ -2503,14 +2775,15 @@ version = "0.4.0" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "f4dc295e983502292c4c3f951dbb4e985e35b3be" +git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.18" -weakdeps = ["Adapt", "GPUArraysCore", "SparseArrays", "StaticArrays"] +version = "0.6.21" +weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] StructArraysAdaptExt = "Adapt" - StructArraysGPUArraysCoreExt = "GPUArraysCore" + StructArraysGPUArraysCoreExt = ["GPUArraysCore", "KernelAbstractions"] + StructArraysLinearAlgebraExt = "LinearAlgebra" StructArraysSparseArraysExt = "SparseArrays" StructArraysStaticArraysExt = "StaticArrays" @@ -2524,27 +2797,51 @@ uuid = "bea87d4a-7f5b-5778-9afe-8cc45184846c" version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] -deps = ["DocStringExtensions"] -git-tree-sha1 = "f8ab052bfcbdb9b48fad2c80c873aa0d0344dfe5" +deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] +git-tree-sha1 = "fd2d4f0499f6bb4a0d9f5030f5c7d61eed385e03" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" +version = "0.3.37" + +[[deps.SymbolicLimits]] +deps = ["SymbolicUtils"] +git-tree-sha1 = "fabf4650afe966a2ba646cabd924c3fd43577fc3" +uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "TimerOutputs", "Unityper"] -git-tree-sha1 = "2f3fa844bcd33e40d8c29de5ee8dded7a0a70422" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] +git-tree-sha1 = "f631a4de315d3486ec768f9e9a6a3a85660427e8" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "1.4.0" +version = "3.11.0" + + [deps.SymbolicUtils.extensions] + SymbolicUtilsLabelledArraysExt = "LabelledArrays" + SymbolicUtilsReverseDiffExt = "ReverseDiff" + + [deps.SymbolicUtils.weakdeps] + LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" + ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "RecursiveArrayTools", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicUtils"] -git-tree-sha1 = "28f55dcd865e4a97f262fc476306cee14e8d4651" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "ad6615b11e39fb0619b0b3d766ab4d24a432d722" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "5.11.0" +version = "6.23.0" [deps.Symbolics.extensions] + SymbolicsForwardDiffExt = "ForwardDiff" + SymbolicsGroebnerExt = "Groebner" + SymbolicsLuxExt = "Lux" + SymbolicsNemoExt = "Nemo" + SymbolicsPreallocationToolsExt = ["PreallocationTools", "ForwardDiff"] SymbolicsSymPyExt = "SymPy" [deps.Symbolics.weakdeps] + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + Groebner = "0b43b601-686d-58a3-8a1c-6623616c7cd4" + Lux = "b2108857-7c20-44ae-9111-449ecde12c47" + Nemo = "2edaba10-b0f1-5616-af89-8c11ac63239a" + PreallocationTools = "d236fae5-4411-538c-8e31-a6e3d9e00b46" SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6" [[deps.TOML]] @@ -2575,6 +2872,11 @@ git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" uuid = "62fd8b95-f654-4bbd-a8a5-9c27f68ccd50" version = "0.1.1" +[[deps.TermInterface]] +git-tree-sha1 = "d673e0aca9e46a2f63720201f55cc7b3e7169b16" +uuid = "8ea1fca8-c5ef-4a55-8b96-4e9afe9c9a3c" +version = "2.0.0" + [[deps.TerminalLoggers]] deps = ["LeftChildRightSiblingTrees", "Logging", "Markdown", "Printf", "ProgressLogging", "UUIDs"] git-tree-sha1 = "f133fab380933d042f6796eda4e130272ba520ca" @@ -2585,6 +2887,11 @@ version = "0.1.7" deps = ["InteractiveUtils", "Logging", "Random", "Serialization"] uuid = "8dfed614-e22c-5e08-85e1-65c5234f0b40" +[[deps.TestItems]] +git-tree-sha1 = "42fd9023fef18b9b78c8343a4e2f3813ffbcefcb" +uuid = "1c621080-faea-4a02-84b6-bbd5e436b8fe" +version = "1.0.0" + [[deps.ThreadingUtilities]] deps = ["ManualMemory"] git-tree-sha1 = "eda08f7e9818eb53661b3deb74e3159460dfbc27" @@ -2608,12 +2915,13 @@ uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa" version = "0.11.3" [[deps.Transducers]] -deps = ["Adapt", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "Setfield", "SplittablesBase", "Tables"] -git-tree-sha1 = "3064e780dbb8a9296ebb3af8f440f787bb5332af" +deps = ["Accessors", "ArgCheck", "BangBang", "Baselet", "CompositionsBase", "ConstructionBase", "DefineSingletons", "Distributed", "InitialValues", "Logging", "Markdown", "MicroCollections", "Requires", "SplittablesBase", "Tables"] +git-tree-sha1 = "7deeab4ff96b85c5f72c824cae53a1398da3d1cb" uuid = "28d57a85-8fef-5791-bfe6-a80928e7c999" -version = "0.4.80" +version = "0.4.84" [deps.Transducers.extensions] + TransducersAdaptExt = "Adapt" TransducersBlockArraysExt = "BlockArrays" TransducersDataFramesExt = "DataFrames" TransducersLazyArraysExt = "LazyArrays" @@ -2621,6 +2929,7 @@ version = "0.4.80" TransducersReferenceablesExt = "Referenceables" [deps.Transducers.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" BlockArrays = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" DataFrames = "a93c6f00-e57d-5684-b7b6-d8193f3e46c0" LazyArrays = "5078a376-72f3-5289-bfd5-ec5146d43c02" @@ -2691,9 +3000,13 @@ uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415" version = "0.1.6" [[deps.UnsafeAtomics]] -git-tree-sha1 = "6331ac3440856ea1988316b46045303bef658278" +git-tree-sha1 = "b13c4edda90890e5b04ba24e20a310fbe6f249ff" uuid = "013be700-e6cd-48c3-b4a1-df204f14c38f" -version = "0.2.1" +version = "0.3.0" +weakdeps = ["LLVM"] + + [deps.UnsafeAtomics.extensions] + UnsafeAtomicsLLVM = ["LLVM"] [[deps.Unzip]] git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78" @@ -2711,12 +3024,6 @@ git-tree-sha1 = "58d6e80b4ee071f5efd07fda82cb9fbe17200868" uuid = "81def892-9a0e-5fdd-b105-ffc91e053289" version = "1.3.0" -[[deps.VertexSafeGraphs]] -deps = ["Graphs"] -git-tree-sha1 = "8351f8d73d7e880bfc042a8b6922684ebeafb35c" -uuid = "19fa3120-7c27-5ec5-8db8-b0b0aa330d6f" -version = "0.2.0" - [[deps.Vulkan_Loader_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Wayland_jll", "Xorg_libX11_jll", "Xorg_libXrandr_jll", "xkbcommon_jll"] git-tree-sha1 = "2f0486047a07670caad3a81a075d2e518acc5c59" @@ -2735,6 +3042,11 @@ git-tree-sha1 = "5db3e9d307d32baba7067b13fc7b5aa6edd4a19a" uuid = "2381bf8a-dfd0-557d-9999-79630e7b1b91" version = "1.36.0+0" +[[deps.WeakValueDicts]] +git-tree-sha1 = "98528c2610a5479f091d470967a25becfd83edd0" +uuid = "897b6980-f191-5a31-bcb0-bf3c4585e0c1" +version = "0.1.0" + [[deps.Weave]] deps = ["Base64", "Dates", "Highlights", "JSON", "Markdown", "Mustache", "Pkg", "Printf", "REPL", "RelocatableFolders", "Requires", "Serialization", "YAML"] git-tree-sha1 = "092217eb5443926d200ae9325f103906efbb68b1" @@ -2742,16 +3054,28 @@ uuid = "44d3d7a6-8a23-5bf8-98c5-b353f8df5ec9" version = "0.10.12" [[deps.WeightInitializers]] -deps = ["ChainRulesCore", "LinearAlgebra", "PartialFunctions", "PrecompileTools", "Random", "SpecialFunctions", "Statistics"] -git-tree-sha1 = "f0e6760ef9d22f043710289ddf29e4a4048c4822" +deps = ["ArgCheck", "ConcreteStructs", "GPUArraysCore", "LinearAlgebra", "Random", "SpecialFunctions", "Statistics"] +git-tree-sha1 = "47b97ba36fcbbf9cc6707ed6ab60cf24fe50b981" uuid = "d49dbf32-c5c2-4618-8acc-27bb2598ef2d" -version = "0.1.7" +version = "1.1.1" [deps.WeightInitializers.extensions] - WeightInitializersCUDAExt = "CUDA" + WeightInitializersAMDGPUExt = ["AMDGPU", "GPUArrays"] + WeightInitializersCUDAExt = ["CUDA", "GPUArrays"] + WeightInitializersChainRulesCoreExt = "ChainRulesCore" + WeightInitializersGPUArraysExt = "GPUArrays" + WeightInitializersMetalExt = ["Metal", "GPUArrays"] + WeightInitializersReactantExt = "Reactant" + WeightInitializersoneAPIExt = ["oneAPI", "GPUArrays"] [deps.WeightInitializers.weakdeps] + AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" + ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" + Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" + oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.WoodburyMatrices]] deps = ["LinearAlgebra", "SparseArrays"] @@ -2968,9 +3292,9 @@ version = "0.6.75" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "27798139afc0a2afa7b1824c206d5e87ea587a00" +git-tree-sha1 = "e5fde37ee23176902a9826f71abf0b9913f02b10" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.5" +version = "0.2.6" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index 68ed73d02..f90718a46 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -1,8 +1,8 @@ [deps] +Cuba = "8a292aeb-7a57-582c-b821-06e4c11590b1" +Cubature = "667455a9-e2ce-5579-9412-b964f529a492" DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab" Integrals = "de52edbc-65ea-441a-8357-d3a637375a31" -IntegralsCuba = "e00cd5f1-6337-4131-8b37-28b2fe4cd6cb" -IntegralsCubature = "c31f79ba-6e32-46d4-a52f-182a8ac42a54" Lux = "b2108857-7c20-44ae-9111-449ecde12c47" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" NeuralPDE = "315f7962-48a3-4962-8226-d0f33b1235f0" @@ -15,14 +15,12 @@ SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" [compat] DelimitedFiles = "1" -Integrals = "3, 4" -IntegralsCuba = "0.2, 0.3" -IntegralsCubature = "0.2" -Lux = "0.5, 1" -ModelingToolkit = "8, 9" +Integrals = "4" +Lux = "1" +ModelingToolkit = "9" NeuralPDE = "5" -Optimization = "3, 4" -OptimizationOptimJL = "0.1, 0.2, 0.3, 0.4" +Optimization = "4" +OptimizationOptimJL = "0.4" Plots = "1" -QuasiMonteCarlo = "0.2, 0.3" -SciMLBenchmarks = "0.1" \ No newline at end of file +QuasiMonteCarlo = "0.3" +SciMLBenchmarks = "0.1" diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index ccb597a72..12ff320d2 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE -using Integrals, IntegralsCubature, IntegralsCuba +using Integrals, Cubature, Cuba using ModelingToolkit, Optimization, OptimizationOptimJL using OptimizationOptimisers using Lux, Plots @@ -144,10 +144,10 @@ end maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 8a09c5a02..2fb066fb2 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE -using Integrals, IntegralsCubature, IntegralsCuba +using Integrals, Cubature, Cuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using OptimizationOptimisers diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index 441903d5b..4637e6f41 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -11,7 +11,7 @@ science-guided AI techniques. ```julia using NeuralPDE -using Integrals, IntegralsCubature, IntegralsCuba +using Integrals, Cubature, Cuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using OptimizationOptimisers diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index 7b5d23f31..f06b7daec 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE -using Integrals, IntegralsCubature, IntegralsCuba +using Integrals, Cubature, Cuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using OptimizationOptimisers diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index 09866e6c4..e0eae0d84 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -13,7 +13,7 @@ science-guided AI techniques. ```julia using NeuralPDE -using Integrals, IntegralsCubature, IntegralsCuba +using Integrals, Cubature, Cuba using ModelingToolkit, Optimization, OptimizationOptimJL using Lux, Plots using DelimitedFiles From 6bbf12cdb377d593ca3d7b65a21c3dc007f52d9a Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Tue, 21 Jan 2025 07:50:37 +0530 Subject: [PATCH 05/22] Package Updates --- benchmarks/PINNErrorsVsTime/Manifest.toml | 20 ++++++++++---------- benchmarks/PINNOptimizers/Manifest.toml | 2 +- 2 files changed, 11 insertions(+), 11 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index ea35a13c4..b2ec9b3b3 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -945,15 +945,15 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "72280b252e0af4c79576b71434582c116f05c524" +git-tree-sha1 = "9bf00ba4c45867c86251a7fd4cb646dcbeb41bf0" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.11" +version = "0.73.12" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "9d5fe5c15d0807d338b1f6d99f0056613b548d5a" +git-tree-sha1 = "36d5430819123553bf31dfdceb3653ca7d9e62d7" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.11+0" +version = "0.73.12+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -2476,9 +2476,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "dbf501ba9edc97bd4a03e69b3186f04721160c65" +git-tree-sha1 = "3ff67684267d8963fa754a5e4ce7db8ab1891013" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.71.2" +version = "2.71.3" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2652,9 +2652,9 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "76b44c879661552d64f382acf66faa29ab56b3d9" +git-tree-sha1 = "d73357bd8c50edc6a2320e7f51ff4337ac2e2a86" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.10" +version = "0.4.11" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] @@ -3292,9 +3292,9 @@ version = "0.6.75" [[deps.ZygoteRules]] deps = ["ChainRulesCore", "MacroTools"] -git-tree-sha1 = "e5fde37ee23176902a9826f71abf0b9913f02b10" +git-tree-sha1 = "434b3de333c75fc446aa0d19fc394edafd07ab08" uuid = "700de1a5-db45-46bc-99cf-38207098b444" -version = "0.2.6" +version = "0.2.7" [[deps.eudev_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "gperf_jll"] diff --git a/benchmarks/PINNOptimizers/Manifest.toml b/benchmarks/PINNOptimizers/Manifest.toml index f79628b7f..fbabf1203 100644 --- a/benchmarks/PINNOptimizers/Manifest.toml +++ b/benchmarks/PINNOptimizers/Manifest.toml @@ -2128,4 +2128,4 @@ version = "3.5.0+0" deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "ece2350174195bb31de1a63bea3a41ae1aa593b6" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "0.9.1+5" +version = "0.9.1+5" \ No newline at end of file From ee34ecc9dfcfc1c5c49e32245271d5ec5fd9947e Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Tue, 21 Jan 2025 22:29:44 +0530 Subject: [PATCH 06/22] Updates --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 8 ++++---- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 1 - 2 files changed, 4 insertions(+), 5 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 12ff320d2..936b65d1f 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -144,10 +144,10 @@ end maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 2fb066fb2..7a6520ef7 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -158,7 +158,6 @@ for min =1:length(minimizers) # minimizer push!(times, string(strat,min) => res[4]) push!(prediction, string(strat,min) => res[5]) push!(losses_res, string(strat,min) => res[6]) - end end ``` From cf9117ed164ef8607ff7f4a96dfbc4a9a6a4f03b Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Thu, 30 Jan 2025 16:39:22 +0530 Subject: [PATCH 07/22] Updates --- benchmarks/PINNOptimizers/Manifest.toml | 2 +- benchmarks/PINNOptimizers/Project.toml | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/benchmarks/PINNOptimizers/Manifest.toml b/benchmarks/PINNOptimizers/Manifest.toml index f74d24e2d..e242f5a69 100644 --- a/benchmarks/PINNOptimizers/Manifest.toml +++ b/benchmarks/PINNOptimizers/Manifest.toml @@ -3399,4 +3399,4 @@ version = "3.5.0+0" deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg", "Wayland_jll", "Wayland_protocols_jll", "Xorg_libxcb_jll", "Xorg_xkeyboard_config_jll"] git-tree-sha1 = "63406453ed9b33a0df95d570816d5366c92b7809" uuid = "d8fb68d0-12a3-5cfd-a85a-d49703b185fd" -version = "0.9.1+5" +version = "1.4.1+2" diff --git a/benchmarks/PINNOptimizers/Project.toml b/benchmarks/PINNOptimizers/Project.toml index 5844247d5..a5a335218 100644 --- a/benchmarks/PINNOptimizers/Project.toml +++ b/benchmarks/PINNOptimizers/Project.toml @@ -14,5 +14,6 @@ ModelingToolkit = "9" NeuralPDE = "5" Optimization = "4" OptimizationOptimJL = "0.4" +OptimizationOptimisers = "0.3" Plots = "1" -SciMLBenchmarks = "0.1" \ No newline at end of file +SciMLBenchmarks = "0.1" From 9534c946596eb7387b2bca9ebb9e89f48b7fd766 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 8 Feb 2025 22:34:45 +0530 Subject: [PATCH 08/22] Added allen_cahn_et.jmd fixes --- benchmarks/PINNErrorsVsTime/Manifest.toml | 154 ++++++++------- benchmarks/PINNErrorsVsTime/Project.toml | 1 + benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 182 ++++++++++-------- 3 files changed, 181 insertions(+), 156 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index b2ec9b3b3..ed0465042 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.7" +julia_version = "1.10.8" manifest_format = "2.0" -project_hash = "95862eb7f14319e4f24b9e3e5572d4d4e953e4aa" +project_hash = "127d76d6f05dda35656cedc3d7c6a5e2195f3c92" [[deps.ADTypes]] -git-tree-sha1 = "72af59f5b8f09faee36b4ec48e014a79210f2f4f" +git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.11.0" +version = "1.12.1" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -156,18 +156,20 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "c3b238aa28c1bebd4b5ea4988bebf27e9a01b72b" +git-tree-sha1 = "93da6c8228993b0052e358ad592ee7c1eccaa639" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.0.1" +version = "1.1.0" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" AtomixMetalExt = "Metal" + AtomixOpenCLExt = "OpenCL" AtomixoneAPIExt = "oneAPI" [deps.Atomix.weakdeps] CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" + OpenCL = "08131aa3-fb12-5dee-8b74-c09406e224a2" oneAPI = "8f75cd03-7ff8-4ecb-9b8f-daf728133b1b" [[deps.AxisAlgorithms]] @@ -251,10 +253,10 @@ weakdeps = ["ForwardDiff"] BracketingNonlinearSolveForwardDiffExt = "ForwardDiff" [[deps.Bzip2_jll]] -deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] -git-tree-sha1 = "8873e196c2eb87962a2048b3b8e08946535864a1" +deps = ["Artifacts", "JLLWrappers", "Libdl"] +git-tree-sha1 = "1b96ea4a01afe0ea4090c5c8039690672dd13f2e" uuid = "6e34b625-4abd-537c-b88f-471c36dfa7a0" -version = "1.0.8+4" +version = "1.0.9+0" [[deps.CEnum]] git-tree-sha1 = "389ad5c84de1ae7cf0e28e381131c98ea87d54fc" @@ -303,15 +305,15 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "bce6804e5e6044c6daab27bb533d1295e4a2e759" +git-tree-sha1 = "545a177179195e442472a1c4dc86982aa7a1bef0" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.6" +version = "0.7.7" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "c785dfb1b3bfddd1da557e861b919819b82bbe5b" +git-tree-sha1 = "26ec26c98ae1453c692efded2b17e15125a5bea1" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.27.1" +version = "3.28.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -385,9 +387,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "b926f8f322026c3a1d9539253ab111735eb540f8" +git-tree-sha1 = "ada42fe016a858e41a29c091aa1c636eda0c3b21" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.22" +version = "0.15.23" [deps.ComponentArrays.extensions] ComponentArraysGPUArraysExt = "GPUArrays" @@ -602,9 +604,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "e7e4ce7787a74d2ec553e7afbeb1bf949caa90ab" +git-tree-sha1 = "0c21d9ab346ae9eedb10bd33ea4520de6980a39b" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.30" +version = "0.6.39" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -614,6 +616,7 @@ version = "0.6.30" DifferentiationInterfaceFiniteDiffExt = "FiniteDiff" DifferentiationInterfaceFiniteDifferencesExt = "FiniteDifferences" DifferentiationInterfaceForwardDiffExt = ["ForwardDiff", "DiffResults"] + DifferentiationInterfaceGTPSAExt = "GTPSA" DifferentiationInterfaceMooncakeExt = "Mooncake" DifferentiationInterfacePolyesterForwardDiffExt = "PolyesterForwardDiff" DifferentiationInterfaceReverseDiffExt = ["ReverseDiff", "DiffResults"] @@ -634,6 +637,7 @@ version = "0.6.30" FiniteDiff = "6a86dc24-6348-571c-b903-95158fe2bd41" FiniteDifferences = "26cc04aa-876d-5657-8c51-4c34ba976000" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" Mooncake = "da2b9cff-9c12-43a0-ae48-6db2b0edb7d6" PolyesterForwardDiff = "98d1487c-24ca-40b6-b7ab-df2af84e126b" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" @@ -683,9 +687,9 @@ version = "0.9.3" [[deps.DomainSets]] deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays"] -git-tree-sha1 = "490392af2c7d63183bfa2c8aaa6ab981c5ba7561" +git-tree-sha1 = "a7e9f13f33652c533d49868a534bfb2050d1365f" uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" -version = "0.7.14" +version = "0.7.15" [deps.DomainSets.extensions] DomainSetsMakieExt = "Makie" @@ -750,9 +754,9 @@ version = "0.1.11" [[deps.Expat_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "e51db81749b0777b2147fbe7b783ee79045b8e99" +git-tree-sha1 = "d55dffd9ae73ff72f1c0482454dcf2ec6c6c4a63" uuid = "2e619515-83b5-522b-bb60-26c02a35a201" -version = "2.6.4+3" +version = "2.6.5+0" [[deps.ExprTools]] git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" @@ -779,9 +783,9 @@ version = "4.4.4+1" [[deps.FFTW]] deps = ["AbstractFFTs", "FFTW_jll", "LinearAlgebra", "MKL_jll", "Preferences", "Reexport"] -git-tree-sha1 = "4820348781ae578893311153d69049a93d05f39d" +git-tree-sha1 = "7de7c78d681078f027389e067864a8d53bd7c3c9" uuid = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" -version = "1.8.0" +version = "1.8.1" [[deps.FFTW_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] @@ -849,9 +853,9 @@ version = "1.4.1" [[deps.FiniteDiff]] deps = ["ArrayInterface", "LinearAlgebra", "Setfield"] -git-tree-sha1 = "84e3a47db33be7248daa6274b287507dd6ff84e8" +git-tree-sha1 = "f089ab1f834470c525562030c8cfde4025d5e915" uuid = "6a86dc24-6348-571c-b903-95158fe2bd41" -version = "2.26.2" +version = "2.27.0" [deps.FiniteDiff.extensions] FiniteDiffBandedMatricesExt = "BandedMatrices" @@ -1060,9 +1064,9 @@ version = "2.11.2+3" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] -git-tree-sha1 = "b1c2585431c382e3fe5805874bda6aea90a95de9" +git-tree-sha1 = "2bd56245074fab4015b9174f24ceba8293209053" uuid = "34004b35-14d8-5ef3-9330-4cdb6864b03a" -version = "0.3.25" +version = "0.3.27" [[deps.IJulia]] deps = ["Base64", "Conda", "Dates", "InteractiveUtils", "JSON", "Libdl", "Logging", "Markdown", "MbedTLS", "Pkg", "Printf", "REPL", "Random", "SoftGlobalScope", "Test", "UUIDs", "ZMQ"] @@ -1129,9 +1133,9 @@ version = "4.5.0" [[deps.IntelOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl"] -git-tree-sha1 = "10bd689145d2c3b2a9844005d01087cc1194e79e" +git-tree-sha1 = "0f14a5456bdc6b9731a5682f439a672750a09e48" uuid = "1d5cc7b8-4909-519e-a0f8-d0f5ad9712d0" -version = "2024.2.1+0" +version = "2025.0.4+0" [[deps.InteractiveUtils]] deps = ["Markdown"] @@ -1169,9 +1173,9 @@ weakdeps = ["Dates", "Test"] InverseFunctionsTestExt = "Test" [[deps.IrrationalConstants]] -git-tree-sha1 = "630b497eafcc20001bba38a4651b327dcfc491d2" +git-tree-sha1 = "e2222959fbc6c19554dc15174c81bf7bf3aa691c" uuid = "92d709cd-6900-40b7-9082-c6be49f344b6" -version = "0.2.2" +version = "0.2.4" [[deps.IterTools]] git-tree-sha1 = "42d5f897009e7ff2cf88db414a389e5ed1bdd023" @@ -1228,9 +1232,9 @@ version = "0.6.0" [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "b9a838cd3028785ac23822cded5126b3da394d1a" +git-tree-sha1 = "d5bc0b079382e89bfa91433639bc74b9f9e17ae7" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.31" +version = "0.9.33" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1270,9 +1274,9 @@ version = "4.0.1+0" [[deps.LLVM]] deps = ["CEnum", "LLVMExtra_jll", "Libdl", "Preferences", "Printf", "Unicode"] -git-tree-sha1 = "d422dfd9707bec6617335dc2ea3c5172a87d5908" +git-tree-sha1 = "5fcfea6df2ff3e4da708a40c969c3812162346df" uuid = "929cbde3-209d-540e-8aea-75f648917ca0" -version = "9.1.3" +version = "9.2.0" [deps.LLVM.extensions] BFloat16sExt = "BFloat16s" @@ -1282,9 +1286,9 @@ version = "9.1.3" [[deps.LLVMExtra_jll]] deps = ["Artifacts", "JLLWrappers", "LazyArtifacts", "Libdl", "TOML"] -git-tree-sha1 = "05a8bd5a42309a9ec82f700876903abce1017dd3" +git-tree-sha1 = "4b5ad6a4ffa91a00050a964492bc4f86bb48cea0" uuid = "dad2f222-ce93-54a1-a47d-0025e8a3acab" -version = "0.0.34+0" +version = "0.0.35+0" [[deps.LLVMOpenMP_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1339,9 +1343,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "bf3957638b78521f286f3b2ebaa46a475dc74817" +git-tree-sha1 = "795ae125c98c58ceb1de562633703e0b120a1b17" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.3.2" +version = "2.4.0" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1677,9 +1681,9 @@ version = "0.3.14" [[deps.MKL_jll]] deps = ["Artifacts", "IntelOpenMP_jll", "JLLWrappers", "LazyArtifacts", "Libdl", "oneTBB_jll"] -git-tree-sha1 = "f046ccd0c6db2832a9f639e2c669c6fe867e5f4f" +git-tree-sha1 = "5de60bc6cb3899cd318d80d627560fae2e2d99ae" uuid = "856f044c-d86e-5d09-b602-aeab76dc8ba7" -version = "2024.2.0+0" +version = "2025.0.1+1" [[deps.MLDataDevices]] deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] @@ -1793,14 +1797,15 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "940443517fbaa6141e058c90573dc153093acfbb" +git-tree-sha1 = "bcfabebca63736dd36012dc9f229e1c2366bf4e7" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.61.0" +version = "9.62.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" MTKChainRulesCoreExt = "ChainRulesCore" MTKDeepDiffsExt = "DeepDiffs" + MTKFMIExt = "FMI" MTKHomotopyContinuationExt = "HomotopyContinuation" MTKInfiniteOptExt = "InfiniteOpt" MTKLabelledArraysExt = "LabelledArrays" @@ -1809,6 +1814,7 @@ version = "9.61.0" BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" + FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" @@ -1821,9 +1827,9 @@ version = "0.2.0" [[deps.MonteCarloMeasurements]] deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "ccd04096ea75caef68aa1ac72588e08f1f90f863" +git-tree-sha1 = "0bfb11dcc2d76dbc3ee03b502943a73a3a87a366" uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" -version = "1.4.0" +version = "1.4.3" [deps.MonteCarloMeasurements.extensions] ForwardDiffExt = "ForwardDiff" @@ -1862,9 +1868,9 @@ version = "1.0.20" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "43122df26d27424b23577d59e2d8020f28386516" +git-tree-sha1 = "9c0bc309df575c85422232eedfb74d5a9c155401" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.2" +version = "1.6.3" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1896,9 +1902,9 @@ version = "0.9.27" [[deps.NaNMath]] deps = ["OpenLibm_jll"] -git-tree-sha1 = "030ea22804ef91648f29b7ad3fc15fa49d0e6e71" +git-tree-sha1 = "cc0a5deefdb12ab3a096f00a6d42133af4560d71" uuid = "77ba4419-2d1f-58cd-9bb1-8ffee604a2e3" -version = "1.0.3" +version = "1.1.2" [[deps.NaturalSort]] git-tree-sha1 = "eda490d06b9f7c00752ee81cfa451efe55521e21" @@ -2048,9 +2054,9 @@ version = "0.5.6+0" [[deps.Optim]] deps = ["Compat", "FillArrays", "ForwardDiff", "LineSearches", "LinearAlgebra", "NLSolversBase", "NaNMath", "Parameters", "PositiveFactorizations", "Printf", "SparseArrays", "StatsBase"] -git-tree-sha1 = "ab7edad78cdef22099f43c54ef77ac63c2c9cc64" +git-tree-sha1 = "c1f51f704f689f87f28b33836fd460ecf9b34583" uuid = "429524aa-4258-5aef-a3af-852621145aeb" -version = "1.10.0" +version = "1.11.0" [deps.Optim.extensions] OptimMOIExt = "MathOptInterface" @@ -2066,9 +2072,9 @@ version = "0.3.4" [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "4b59eef21418fbdf28afbe2d7e945d8efbe5057d" +git-tree-sha1 = "e246ed7381acdc9d39042ba4c263b19f29232de9" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "4.0.5" +version = "4.1.0" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "Requires", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] @@ -2117,9 +2123,9 @@ uuid = "91d4177d-7536-5919-b921-800302f37372" version = "1.3.3+0" [[deps.OrderedCollections]] -git-tree-sha1 = "12f1439c4f986bb868acda6ea33ebc78e19b95ad" +git-tree-sha1 = "cc4054e898b852042d7b503313f7ad03de99c3dd" uuid = "bac558e1-5e72-5ebc-8fee-abe8a469f55d" -version = "1.7.0" +version = "1.8.0" [[deps.PCRE2_jll]] deps = ["Artifacts", "Libdl"] @@ -2380,9 +2386,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "32f824db4e5bab64e25a12b22483a30a6b813d08" +git-tree-sha1 = "ea6ad53c168c7c1c2e8f870aefda269692a8a91f" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.27.4" +version = "3.28.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2476,9 +2482,9 @@ version = "0.6.43" [[deps.SciMLBase]] deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "3ff67684267d8963fa754a5e4ce7db8ab1891013" +git-tree-sha1 = "46c4a97031b9437d5adbb382958820a8ee188c64" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.71.3" +version = "2.72.2" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" @@ -2626,9 +2632,9 @@ version = "1.10.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "010b3c44301805d1ede9159f449a351d61172aa6" +git-tree-sha1 = "f6d636dcf886cf498b3bc484f48c37741d8aac6e" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.9" +version = "0.6.10" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -2652,9 +2658,9 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "d73357bd8c50edc6a2320e7f51ff4337ac2e2a86" +git-tree-sha1 = "45b5ef11e75839e174d5728fd1e73597e7593634" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.11" +version = "0.4.12" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] @@ -2707,9 +2713,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "47091a0340a675c738b1304b58161f3b0839d454" +git-tree-sha1 = "02c8bd479d26dbeff8a7eb1d77edfc10dacabc01" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.10" +version = "1.9.11" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2810,9 +2816,9 @@ version = "0.2.2" [[deps.SymbolicUtils]] deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] -git-tree-sha1 = "f631a4de315d3486ec768f9e9a6a3a85660427e8" +git-tree-sha1 = "29093d99e5b382e917918c91debc139ca1ec7491" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.11.0" +version = "3.13.0" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2823,10 +2829,10 @@ version = "3.11.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "ad6615b11e39fb0619b0b3d766ab4d24a432d722" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "079a1ac7cb5955badc672e36700be704854a0121" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.23.0" +version = "6.27.0" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -3097,9 +3103,9 @@ version = "1.1.42+0" [[deps.XZ_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "beef98d5aad604d9e7d60b2ece5181f7888e2fd6" +git-tree-sha1 = "56c6604ec8b2d82cc4cfe01aa03b00426aac7e1f" uuid = "ffd25f8a-64ca-5728-b0f7-c24cf3aae800" -version = "5.6.4+0" +version = "5.6.4+1" [[deps.Xorg_libICE_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -3357,9 +3363,9 @@ version = "1.18.0+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "d7b5bbf1efbafb5eca466700949625e07533aff2" +git-tree-sha1 = "055a96774f383318750a1a5e10fd4151f04c29c5" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.45+1" +version = "1.6.46+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index f90718a46..047b5c6a9 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -4,6 +4,7 @@ Cubature = "667455a9-e2ce-5579-9412-b964f529a492" DelimitedFiles = "8bb1440f-4735-579b-a4ab-409b98df4dab" Integrals = "de52edbc-65ea-441a-8357-d3a637375a31" Lux = "b2108857-7c20-44ae-9111-449ecde12c47" +MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" NeuralPDE = "315f7962-48a3-4962-8226-d0f33b1235f0" Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba" diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 936b65d1f..cc82d9e5c 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -14,15 +14,13 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, Cubature, Cuba -using ModelingToolkit, Optimization, OptimizationOptimJL -using OptimizationOptimisers +using ModelingToolkit, Optimization, OptimizationOptimJL, OptimizationOptimisers using Lux, Plots using DelimitedFiles -using QuasiMonteCarlo +using QuasiMonteCarlo, Random import ModelingToolkit: Interval, infimum, supremum function allen_cahn(strategy, minimizer, maxIters) - ## DECLARATIONS @parameters t x1 x2 x3 x4 @variables u(..) @@ -33,19 +31,10 @@ function allen_cahn(strategy, minimizer, maxIters) Dxx3 = Differential(x3)^2 Dxx4 = Differential(x4)^2 - # Discretization tmax = 1.0 - x1width = 1.0 - x2width = 1.0 - x3width = 1.0 - x4width = 1.0 - - tMeshNum = 10 - x1MeshNum = 10 - x2MeshNum = 10 - x3MeshNum = 10 - x4MeshNum = 10 + x1width = x2width = x3width = x4width = 1.0 + tMeshNum = x1MeshNum = x2MeshNum = x3MeshNum = x4MeshNum = 10 dt = tmax / tMeshNum dx1 = x1width / x1MeshNum @@ -54,11 +43,12 @@ function allen_cahn(strategy, minimizer, maxIters) dx4 = x4width / x4MeshNum domains = [t ∈ Interval(0.0, tmax), - x1 ∈ Interval(0.0, x1width), - x2 ∈ Interval(0.0, x2width), - x3 ∈ Interval(0.0, x3width), - x4 ∈ Interval(0.0, x4width)] + x1 ∈ Interval(0.0, x1width), + x2 ∈ Interval(0.0, x2width), + x3 ∈ Interval(0.0, x3width), + x4 ∈ Interval(0.0, x4width)] + # Define the coordinates ts = 0.0:dt:tmax x1s = 0.0:dx1:x1width x2s = 0.0:dx2:x2width @@ -66,77 +56,105 @@ function allen_cahn(strategy, minimizer, maxIters) x4s = 0.0:dx4:x4width # Operators - Δu = Dxx1(u(t, x1, x2, x3, x4)) + Dxx2(u(t, x1, x2, x3, x4)) + Dxx3(u(t, x1, x2, x3, x4)) + Dxx4(u(t, x1, x2, x3, x4)) # Laplacian - + Δu = Dxx1(u(t,x1,x2,x3,x4)) + Dxx2(u(t,x1,x2,x3,x4)) + + Dxx3(u(t,x1,x2,x3,x4)) + Dxx4(u(t,x1,x2,x3,x4)) # Equation - eq = Dt(u(t, x1, x2, x3, x4)) - Δu - u(t, x1, x2, x3, x4) + u(t, x1, x2, x3, x4) * u(t, x1, x2, x3, x4) * u(t, x1, x2, x3, x4) ~ 0 #ALLEN CAHN EQUATION - - initialCondition = 1 / (2 + 0.4 * (x1 * x1 + x2 * x2 + x3 * x3 + x4 * x4)) # see PNAS paper - - bcs = [u(0, x1, x2, x3, x4) ~ initialCondition] #from literature - - ## NEURAL NETWORK - n = 10 #neuron number - chain = Lux.Chain(Lux.Dense(5, n, tanh), Lux.Dense(n, n, tanh), Lux.Dense(n, 1)) #Neural network from OptimizationFlux library - - indvars = [t, x1, x2, x3, x4] #physically independent variables - depvars = [u(t, x1, x2, x3, x4)] #dependent (target) variable - - dim = length(domains) - - losses = [] - error = [] - times = [] - - dx_err = 0.2 - - error_strategy = GridTraining(dx_err) - - discretization_ = PhysicsInformedNN(chain, error_strategy) - @named pde_system_ = PDESystem(eq, bcs, domains, indvars, depvars) - prob_ = discretize(pde_system_, discretization_) - - function loss_function_(θ, p) - return prob_.f.f(θ, nothing) - end - - cb_ = function (p, l) - deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error - - ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot - append!(times, ctime / 10^9) #Conversion nanosec to seconds - append!(losses, l) - loss_ = loss_function_(p, nothing) - append!(error, loss_) - timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations - - #if (ctime/10^9 > time) #if I exceed the limit time I stop the training - # return true #Stop the minimizer and continue from line 142 - #end - - return false + eq = Dt(u(t,x1,x2,x3,x4)) - Δu - u(t,x1,x2,x3,x4) + + u(t,x1,x2,x3,x4)^3 ~ 0 + + # Initial condition + initialCondition = 1 / (2 + 0.4 * (x1^2 + x2^2 + x3^2 + x4^2)) + bcs = [u(0,x1,x2,x3,x4) ~ initialCondition] + + # Neural Network setup + n = 10 + + # Create the neural network with explicit CPU device + chain = Lux.Chain( + Lux.Dense(5 => n, tanh), + Lux.Dense(n => n, tanh), + Lux.Dense(n => 1, identity) + ) + + # Initialize parameters with random seed + rng = Random.default_rng() + init_params, st = Lux.setup(rng, chain) + + # Use StochasticTraining instead of QuadratureTraining + training_strategy = NeuralPDE.StochasticTraining( + 500; # Number of points for domain + bcs_points = 50, # Number of points for boundary conditions + ) + + # Create the PINN + discretization = PhysicsInformedNN( + chain, + training_strategy; + init_params = init_params, + states = st + ) + + # Setup PDE system + @named pde_system = PDESystem( + eq, + bcs, + domains, + [t,x1,x2,x3,x4], + [u(t,x1,x2,x3,x4)] + ) + + # Discretize + prob = discretize(pde_system, discretization) + + # Training setup + losses = Float64[] + error = Float64[] + times = Float64[] + timeCounter = 0.0 + startTime = time_ns() + + # Callback function + cb = function (p, l) + try + deltaT_s = time_ns() + ctime = time_ns() - startTime - timeCounter + + push!(times, ctime / 1e9) + push!(losses, l) + push!(error, l) + + timeCounter += time_ns() - deltaT_s + return false + catch e + @warn "Callback error: $e" + return false + end end - @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) - - discretization = NeuralPDE.PhysicsInformedNN(chain, strategy) - prob = NeuralPDE.discretize(pde_system, discretization) - - timeCounter = 0.0 - startTime = time_ns() #Fix initial time (t=0) before starting the training - res = Optimization.solve(prob, minimizer, callback=cb_, maxiters=maxIters) + # Solve with optimization + res = Optimization.solve( + prob, + minimizer; + callback = cb, + maxiters = maxIters + ) + # Generate predictions phi = discretization.phi - - params = res.minimizer - - # Model prediction domain = [ts, x1s, x2s, x3s, x4s] + + u_predict = try + [reshape([first(phi([t,x1,x2,x3,x4], res.minimizer)) + for x1 in x1s, x2 in x2s, x3 in x3s, x4 in x4s], + (length(x1s), length(x2s), length(x3s), length(x4s))) + for t in ts] + catch e + @warn "Prediction generation failed: $e" + nothing + end - u_predict = [reshape([first(phi([t, x1, x2, x3, x4], res.minimizer)) for x1 in x1s for x2 in x2s for x3 in x3s for x4 in x4s], (length(x1s), length(x2s), length(x3s), length(x4s))) for t in ts] #matrix of model's prediction - - return [error, params, domain, times, losses] + return [error, res.minimizer, domain, times, losses] end ``` From b7a0faddacc6f5b9c80ca85f32dc895da414e972 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 8 Feb 2025 22:49:51 +0530 Subject: [PATCH 09/22] QuasiRandomTraining Strategy --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index cc82d9e5c..0d238857f 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -82,7 +82,7 @@ function allen_cahn(strategy, minimizer, maxIters) init_params, st = Lux.setup(rng, chain) # Use StochasticTraining instead of QuadratureTraining - training_strategy = NeuralPDE.StochasticTraining( + training_strategy = NeuralPDE.QuasiRandomTraining( 500; # Number of points for domain bcs_points = 50, # Number of points for boundary conditions ) From 357f6351daf99b5fcf3e48386bf02656fbd452bd Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Tue, 11 Feb 2025 09:00:58 +0530 Subject: [PATCH 10/22] Fixed MLDataDevices error, one error yet to fix --- benchmarks/PINNErrorsVsTime/Manifest.toml | 16 ++++---- benchmarks/PINNErrorsVsTime/Project.toml | 1 + benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 1 - .../PINNErrorsVsTime/hamilton_jacobi_et.jmd | 34 ++++++++++------- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 33 ++++++++++------ .../PINNErrorsVsTime/nernst_planck_et.jmd | 38 +++++++++++-------- 6 files changed, 75 insertions(+), 48 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index ed0465042..8ca7db3f9 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.8" manifest_format = "2.0" -project_hash = "127d76d6f05dda35656cedc3d7c6a5e2195f3c92" +project_hash = "8a9d6325eca5f9e893507c4ceff91174f109c29d" [[deps.ADTypes]] git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1" @@ -583,13 +583,11 @@ deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdo git-tree-sha1 = "516d553f5deee7c55b2945b5edf05b6542837887" uuid = "77a26b50-5914-5dd7-bc55-306e6241c503" version = "5.24.1" +weakdeps = ["ReverseDiff"] [deps.DiffEqNoiseProcess.extensions] DiffEqNoiseProcessReverseDiffExt = "ReverseDiff" - [deps.DiffEqNoiseProcess.weakdeps] - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - [[deps.DiffResults]] deps = ["StaticArraysCore"] git-tree-sha1 = "782dd5f4561f5d267313f23853baaaa4c52ea621" @@ -2233,13 +2231,11 @@ deps = ["Adapt", "ArrayInterface", "ForwardDiff"] git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" version = "0.4.24" +weakdeps = ["ReverseDiff"] [deps.PreallocationTools.extensions] PreallocationToolsReverseDiffExt = "ReverseDiff" - [deps.PreallocationTools.weakdeps] - ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -2441,6 +2437,12 @@ git-tree-sha1 = "256eeeec186fa7f26f2801732774ccf277f05db9" uuid = "ae5879a3-cd67-5da8-be7f-38c6eb64a37b" version = "1.1.1" +[[deps.ReverseDiff]] +deps = ["ChainRulesCore", "DiffResults", "DiffRules", "ForwardDiff", "FunctionWrappers", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "Random", "SpecialFunctions", "StaticArrays", "Statistics"] +git-tree-sha1 = "cc6cd622481ea366bb9067859446a8b01d92b468" +uuid = "37e2e3b7-166d-5795-8a7a-e32c996b4267" +version = "1.15.3" + [[deps.Rmath]] deps = ["Random", "Rmath_jll"] git-tree-sha1 = "852bd0f55565a9e973fcfee83a84413270224dc4" diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index 047b5c6a9..950f22c44 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -12,6 +12,7 @@ OptimizationOptimJL = "36348300-93cb-4f02-beb5-3c3902f8871e" OptimizationOptimisers = "42dfb2eb-d2b4-4451-abcd-913932933ac1" Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80" QuasiMonteCarlo = "8a4e6c94-4038-4cdc-81c3-7e6ffdb2a71b" +ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344" [compat] diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 0d238857f..0ef12afcf 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -81,7 +81,6 @@ function allen_cahn(strategy, minimizer, maxIters) rng = Random.default_rng() init_params, st = Lux.setup(rng, chain) - # Use StochasticTraining instead of QuadratureTraining training_strategy = NeuralPDE.QuasiRandomTraining( 500; # Number of points for domain bcs_points = 50, # Number of points for boundary conditions diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index 4637e6f41..f5cbc21c2 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -106,21 +106,29 @@ function hamilton_jacobi(strategy, minimizer, maxIters) prob_ = discretize(pde_system_, discretization_) function loss_function_(θ, p) - return prob_.f.f(θ, nothing) + params = θ.u + return prob_.f.f(params, nothing) end - cb_ = function (p, l) - deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error - - ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot - append!(times, ctime / 10^9) #Conversion nanosec to seconds - append!(losses, l) - loss_ = loss_function_(p, nothing) - append!(error, loss_) - - timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations - - return false + function cb_(p, l) + try + deltaT_s = time_ns() + ctime = time_ns() - startTime - timeCounter + + push!(times, ctime / 1e9) + push!(losses, l) + + # Extract parameters for loss calculation + params = p.u + loss_ = loss_function_(p, nothing) + push!(error, loss_) + + timeCounter += time_ns() - deltaT_s + return false + catch e + @warn "Callback error: $e" + return false + end end @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index f06b7daec..a5ba57d0f 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -102,20 +102,29 @@ function level_set(strategy, minimizer, maxIters) prob_ = discretize(pde_system_, discretization_) function loss_function_(θ, p) - return prob_.f.f(θ, nothing) + params = θ.u + return prob_.f.f(params, nothing) end - cb_ = function (p, l) - deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error - - ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot - append!(times, ctime / 10^9) #Conversion nanosec to seconds - append!(losses, l) - loss_ = loss_function_(p, nothing) - append!(error, loss_) - timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations - - return false + function cb_(p, l) + try + deltaT_s = time_ns() + ctime = time_ns() - startTime - timeCounter + + push!(times, ctime / 1e9) + push!(losses, l) + + # Extract parameters for loss calculation + params = p.u + loss_ = loss_function_(p, nothing) + push!(error, loss_) + + timeCounter += time_ns() - deltaT_s + return false + catch e + @warn "Callback error: $e" + return false + end end @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index e0eae0d84..db5470516 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -99,26 +99,34 @@ function nernst_planck(strategy, minimizer, maxIters) error_strategy = GridTraining(dx_err) - discretization_ = PhysicsInformedNN(chain, error_strategy) + discretization_ = PhysicsInformedNN(chain, error_strategy) @named pde_system_ = PDESystem(eq, bcs, domains, indvars, depvars) prob_ = discretize(pde_system_, discretization_) function loss_function_(θ, p) - return prob_.f.f(θ, nothing) + params = θ.u + return prob_.f.f(params, nothing) end - cb_ = function (p,l) - deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error - - ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot - append!(times, ctime/10^9) #Conversion nanosec to seconds - append!(losses, l) - loss_ = loss_function_(p,nothing) - append!(error, loss_) - - timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations - - return false + function cb_(p, l) + try + deltaT_s = time_ns() + ctime = time_ns() - startTime - timeCounter + + push!(times, ctime / 1e9) + push!(losses, l) + + # Extract parameters for loss calculation + params = p.u + loss_ = loss_function_(p, nothing) + push!(error, loss_) + + timeCounter += time_ns() - deltaT_s + return false + catch e + @warn "Callback error: $e" + return false + end end @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) @@ -177,7 +185,7 @@ minimizers_short_name = ["ADAM", # Run models error_res = Dict() domains = Dict() -params_res = Dict() #to use same params for the next run +params_res = Dict() times = Dict() ``` From f67d6f46a807dac24241a7ed3af7fccc59492464 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Tue, 11 Feb 2025 21:16:32 +0530 Subject: [PATCH 11/22] Updates --- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 8 +++++--- 1 file changed, 5 insertions(+), 3 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 7a6520ef7..6233f1d3b 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -61,7 +61,8 @@ function diffusion(strategy, minimizer, maxIters) prob_ = discretize(pde_system_, discretization_) function loss_function_(θ, p) - return prob_.f.f(θ, nothing) + params = θ.u + return prob_.f.f(params, nothing) end cb_ = function (p,l) @@ -106,7 +107,8 @@ maxIters = [(5000,5000,5000,5000,5000,5000),(300,300,300,300,300,300)] #iters fo # maxIters = [(5,5,5,5,5,5),(3,3,3,3,3,3)] #iters for ADAM/LBFGS strategies = [#NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-3, maxiters = 10, batch = 10), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol=1e-5, maxiters=1100, batch = 0), + #NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol=1e-5, maxiters=1100, batch = 100), + NeuralPDE.GridTraining([0.2, 0.1]), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol=1e-5, maxiters=1100), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol=1e-5, maxiters=1100), NeuralPDE.GridTraining([0.2,0.1]), @@ -114,7 +116,7 @@ strategies = [#NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] strategies_short_name = [#"CubaCuhre", - "HCubatureJL", + #"HCubatureJL", "CubatureJLh", "CubatureJLp", #"CubaVegas", From 5985dd815c4f3c4aa5e8e04b33e618afcc855246 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Wed, 12 Feb 2025 08:19:59 +0530 Subject: [PATCH 12/22] Updates --- benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd | 3 ++- benchmarks/PINNErrorsVsTime/level_set_et.jmd | 3 ++- benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd | 3 ++- 3 files changed, 6 insertions(+), 3 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd index f5cbc21c2..f34c09030 100644 --- a/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd +++ b/benchmarks/PINNErrorsVsTime/hamilton_jacobi_et.jmd @@ -156,7 +156,8 @@ maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,300,300,300,300)] #iters for ADAM # maxIters = [(1,1,1,1,1,2,2),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + #NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.GridTraining(0.1), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), diff --git a/benchmarks/PINNErrorsVsTime/level_set_et.jmd b/benchmarks/PINNErrorsVsTime/level_set_et.jmd index a5ba57d0f..d4a342aa5 100644 --- a/benchmarks/PINNErrorsVsTime/level_set_et.jmd +++ b/benchmarks/PINNErrorsVsTime/level_set_et.jmd @@ -154,7 +154,8 @@ maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,500,500,500,500)] #iters for ADAM # maxIters = [(1,1,1,2,2,2,2),(1,1,1,2,2,2,2)] #iters for ADAM/LBFGS strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + #NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.GridTraining(0.1), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.1), diff --git a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd index db5470516..ff49be147 100644 --- a/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd +++ b/benchmarks/PINNErrorsVsTime/nernst_planck_et.jmd @@ -157,7 +157,8 @@ maxIters = [(1,1,1,1000,1000,1000,1000),(1,1,1,300,300,300,300)] #iters for ADAM # maxIters = [(1,1,1,10,10,10,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + #NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.GridTraining(0.1), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), From fcd2b46db524091b5f1386ad0e01440b99d5dbfc Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 15 Feb 2025 07:39:18 +0530 Subject: [PATCH 13/22] Updates --- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 22 ++++++++------------ 1 file changed, 9 insertions(+), 13 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 6233f1d3b..23e8b2f1c 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -106,14 +106,13 @@ end maxIters = [(5000,5000,5000,5000,5000,5000),(300,300,300,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(5,5,5,5,5,5),(3,3,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [#NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-3, maxiters = 10, batch = 10), - #NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol=1e-5, maxiters=1100, batch = 100), - NeuralPDE.GridTraining([0.2, 0.1]), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol=1e-5, maxiters=1100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol=1e-5, maxiters=1100), - NeuralPDE.GridTraining([0.2,0.1]), - NeuralPDE.StochasticTraining(400 ; bcs_points= 50), - NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] +strategies = [ + NeuralPDE.GridTraining([0.2, 0.1]), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol=1e-5, maxiters=1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol=1e-5, maxiters=1100), + NeuralPDE.StochasticTraining(400 ; bcs_points= 50), + NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50) +] strategies_short_name = [#"CubaCuhre", #"HCubatureJL", @@ -168,20 +167,17 @@ end ```julia current_label = string(strategies_short_name[1], " + " , minimizers_short_name[1]) -error = Plots.plot(times["11"], error_res["11"], yaxis=:log10, label = current_label)#, xlims = (0,100))#legend = true)#, size=(1200,700)) +error = Plots.plot(times["11"], error_res["11"], yaxis=:log10, label = current_label) plot!(error, times["21"], error_res["21"], yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[1])) plot!(error, times["31"], error_res["31"], yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[1])) plot!(error, times["41"], error_res["41"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[1])) plot!(error, times["51"], error_res["51"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[1])) -plot!(error, times["61"], error_res["61"], yaxis=:log10, label = string(strategies_short_name[6], " + " , minimizers_short_name[1])) - plot!(error, times["12"], error_res["12"], yaxis=:log10, label = string(strategies_short_name[1], " + " , minimizers_short_name[2])) plot!(error, times["22"], error_res["22"], yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[2])) plot!(error, times["32"], error_res["32"], yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[2])) plot!(error, times["42"], error_res["42"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[2])) -plot!(error, times["52"], error_res["52"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[2])) -plot!(error, times["62"], error_res["62"], yaxis=:log10, title = string("Diffusion convergence ADAM/LBFGS"), ylabel = "log(error)",xlabel = "t", label = string(strategies_short_name[6], " + " , minimizers_short_name[2])) +plot!(error, times["52"], error_res["52"], yaxis=:log10, title = string("Diffusion convergence ADAM/LBFGS"), ylabel = "log(error)", xlabel = "t", label = string(strategies_short_name[5], " + " , minimizers_short_name[2])) ``` ```julia, echo = false From bfdd516829f8554f807f8c6b37a022c6d25e3ef4 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 15 Feb 2025 07:40:01 +0530 Subject: [PATCH 14/22] Updates --- benchmarks/PINNErrorsVsTime/diffusion_et.jmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd index 23e8b2f1c..be69d258c 100644 --- a/benchmarks/PINNErrorsVsTime/diffusion_et.jmd +++ b/benchmarks/PINNErrorsVsTime/diffusion_et.jmd @@ -103,7 +103,7 @@ end ``` ```julia -maxIters = [(5000,5000,5000,5000,5000,5000),(300,300,300,300,300,300)] #iters for ADAM/LBFGS +maxIters = [(5000,5000,5000,5000,5000),(300,300,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(5,5,5,5,5,5),(3,3,3,3,3,3)] #iters for ADAM/LBFGS strategies = [ From b2ec714365323013075833972874d4172afcafad Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 22 Feb 2025 22:53:47 +0530 Subject: [PATCH 15/22] Code updates --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 36 +++++++++++-------- 1 file changed, 21 insertions(+), 15 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 0ef12afcf..e5926052a 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -20,7 +20,7 @@ using DelimitedFiles using QuasiMonteCarlo, Random import ModelingToolkit: Interval, infimum, supremum -function allen_cahn(strategy, minimizer, maxIters) +function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added time_limit parameter (default 1 hour in seconds) ## DECLARATIONS @parameters t x1 x2 x3 x4 @variables u(..) @@ -113,7 +113,7 @@ function allen_cahn(strategy, minimizer, maxIters) timeCounter = 0.0 startTime = time_ns() - # Callback function + # Callback function with time cap cb = function (p, l) try deltaT_s = time_ns() @@ -124,6 +124,12 @@ function allen_cahn(strategy, minimizer, maxIters) push!(error, l) timeCounter += time_ns() - deltaT_s + + if (ctime / 1e9 > time_limit) + println("Time limit of $time_limit seconds exceeded. Stopping training.") + return true + end + return false catch e @warn "Callback error: $e" @@ -161,10 +167,10 @@ end maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] @@ -194,15 +200,15 @@ losses_res = Dict() ## Convergence for min =1:length(minimizers) # minimizer - for strat=1:length(strategies) # strategy - # println(string(strategies_short_name[strat], " ", minimizers_short_name[min])) - res = allen_cahn(strategies[strat], minimizers[min], maxIters[min][strat]) - push!(error_res, string(strat,min) => res[1]) - push!(params_res, string(strat,min) => res[2]) - push!(domains, string(strat,min) => res[3]) - push!(times, string(strat,min) => res[4]) - push!(losses_res, string(strat,min) => res[5]) - end + for strat=1:length(strategies) # strategy + # println(string(strategies_short_name[strat], " ", minimizers_short_name[min])) + res = allen_cahn(strategies[strat], minimizers[min], maxIters[min][strat]) + push!(error_res, string(strat,min) => res[1]) + push!(params_res, string(strat,min) => res[2]) + push!(domains, string(strat,min) => res[3]) + push!(times, string(strat,min) => res[4]) + push!(losses_res, string(strat,min) => res[5]) + end end ``` From 41ff5ea7eb0b2e84658642f49b3972da1233d2e7 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sun, 23 Feb 2025 00:40:35 +0530 Subject: [PATCH 16/22] Added code to log t --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 3 +++ 1 file changed, 3 insertions(+) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index e5926052a..ece08cb87 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -159,6 +159,9 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t nothing end + # Log the time points (ts) + println("Time points (t) for strategy $strategy and minimizer $minimizer: ", collect(ts)) + return [error, res.minimizer, domain, times, losses] end ``` From 0e8aec5743eddde0f3932c36ce3b6376e6c32b6b Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Tue, 4 Mar 2025 22:52:32 +0530 Subject: [PATCH 17/22] Added updates --- benchmarks/PINNErrorsVsTime/Manifest.toml | 326 +++++++++--------- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 43 +-- 2 files changed, 174 insertions(+), 195 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index 8ca7db3f9..093ff8202 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.8" +julia_version = "1.10.5" manifest_format = "2.0" project_hash = "8a9d6325eca5f9e893507c4ceff91174f109c29d" [[deps.ADTypes]] -git-tree-sha1 = "e1ce448a0d7f88168ffe2eeac4549c32d45a42d1" +git-tree-sha1 = "fb97701c117c8162e84dfcf80215caa904aef44f" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.12.1" +version = "1.13.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -39,9 +39,9 @@ version = "0.4.5" [[deps.Accessors]] deps = ["CompositionsBase", "ConstructionBase", "Dates", "InverseFunctions", "MacroTools"] -git-tree-sha1 = "0ba8f4c1f06707985ffb4804fdad1bf97b233897" +git-tree-sha1 = "3b86719127f50670efe356bc11073d84b4ed7a5d" uuid = "7d9f7c33-5ae7-4f3b-8dc6-eff91059b697" -version = "0.1.41" +version = "0.1.42" [deps.Accessors.extensions] AxisKeysExt = "AxisKeys" @@ -56,7 +56,6 @@ version = "0.1.41" AxisKeys = "94b1ba4f-4ee9-5380-92f1-94cde586c3c5" IntervalSets = "8197267c-284f-5f27-9208-e0e47529a953" LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" - Requires = "ae029012-a4dd-5104-9daa-d747884805df" StaticArrays = "90137ffa-7385-5640-81b9-e52037218182" StructArrays = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" @@ -64,12 +63,13 @@ version = "0.1.41" [[deps.Adapt]] deps = ["LinearAlgebra", "Requires"] -git-tree-sha1 = "50c3c56a52972d78e8be9fd135bfb91c9574c140" +git-tree-sha1 = "cd8b948862abee8f3d3e9b73a102a9ca924debb0" uuid = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" -version = "4.1.1" -weakdeps = ["StaticArrays"] +version = "4.2.0" +weakdeps = ["SparseArrays", "StaticArrays"] [deps.Adapt.extensions] + AdaptSparseArraysExt = "SparseArrays" AdaptStaticArraysExt = "StaticArrays" [[deps.AdvancedHMC]] @@ -143,9 +143,9 @@ version = "7.18.0" [[deps.ArrayLayouts]] deps = ["FillArrays", "LinearAlgebra"] -git-tree-sha1 = "2bf6e01f453284cb61c312836b4680331ddfc44b" +git-tree-sha1 = "4e25216b8fea1908a0ce0f5d87368587899f75be" uuid = "4c555306-a7a7-4459-81d9-ec55ddd5c99a" -version = "1.11.0" +version = "1.11.1" weakdeps = ["SparseArrays"] [deps.ArrayLayouts.extensions] @@ -156,9 +156,9 @@ uuid = "56f22d72-fd6d-98f1-02f0-08ddc0907c33" [[deps.Atomix]] deps = ["UnsafeAtomics"] -git-tree-sha1 = "93da6c8228993b0052e358ad592ee7c1eccaa639" +git-tree-sha1 = "b5bb4dc6248fde467be2a863eb8452993e74d402" uuid = "a9b6321e-bd34-4604-b9c9-b65b8de01458" -version = "1.1.0" +version = "1.1.1" [deps.Atomix.extensions] AtomixCUDAExt = "CUDA" @@ -185,10 +185,10 @@ uuid = "39de3d68-74b9-583c-8d2d-e117c070f3a9" version = "0.4.7" [[deps.BangBang]] -deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra", "Requires"] -git-tree-sha1 = "e2144b631226d9eeab2d746ca8880b7ccff504ae" +deps = ["Accessors", "ConstructionBase", "InitialValues", "LinearAlgebra"] +git-tree-sha1 = "26f41e1df02c330c4fa1e98d4aa2168fdafc9b1f" uuid = "198e06fe-97b7-11e9-32a5-e1d131e6ad66" -version = "0.4.3" +version = "0.4.4" [deps.BangBang.extensions] BangBangChainRulesCoreExt = "ChainRulesCore" @@ -232,9 +232,9 @@ version = "0.1.6" [[deps.BlockArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra"] -git-tree-sha1 = "b406207917260364a2e0287b42e4c6772cb9db88" +git-tree-sha1 = "1ded9033f6067573314b27cd4b9ff01a1ba92cff" uuid = "8e7c35d0-a365-5155-bbbb-fb81a777f24e" -version = "1.3.0" +version = "1.4.0" [deps.BlockArrays.extensions] BlockArraysBandedMatricesExt = "BandedMatrices" @@ -283,9 +283,9 @@ version = "1.18.2+1" [[deps.ChainRules]] deps = ["Adapt", "ChainRulesCore", "Compat", "Distributed", "GPUArraysCore", "IrrationalConstants", "LinearAlgebra", "Random", "RealDot", "SparseArrays", "SparseInverseSubset", "Statistics", "StructArrays", "SuiteSparse"] -git-tree-sha1 = "4312d7869590fab4a4f789e97bd82f0a04eaaa05" +git-tree-sha1 = "a975ae558af61a2a48720a6271661bf2621e0f4e" uuid = "082447d4-558c-5d27-93f4-14fc19e9eca2" -version = "1.72.2" +version = "1.72.3" [[deps.ChainRulesCore]] deps = ["Compat", "LinearAlgebra"] @@ -305,15 +305,15 @@ version = "0.1.13" [[deps.CodecZlib]] deps = ["TranscodingStreams", "Zlib_jll"] -git-tree-sha1 = "545a177179195e442472a1c4dc86982aa7a1bef0" +git-tree-sha1 = "962834c22b66e32aa10f7611c08c8ca4e20749a9" uuid = "944b1d66-785c-5afd-91f1-9de20f533193" -version = "0.7.7" +version = "0.7.8" [[deps.ColorSchemes]] deps = ["ColorTypes", "ColorVectorSpace", "Colors", "FixedPointNumbers", "PrecompileTools", "Random"] -git-tree-sha1 = "26ec26c98ae1453c692efded2b17e15125a5bea1" +git-tree-sha1 = "403f2d8e209681fcbd9468a8514efff3ea08452e" uuid = "35d6a980-a343-548e-a6ea-1d62b119f2f4" -version = "3.28.0" +version = "3.29.0" [[deps.ColorTypes]] deps = ["FixedPointNumbers", "Random"] @@ -387,9 +387,9 @@ version = "1.1.1+0" [[deps.ComponentArrays]] deps = ["Adapt", "ArrayInterface", "ChainRulesCore", "ConstructionBase", "ForwardDiff", "Functors", "LinearAlgebra", "StaticArrayInterface", "StaticArraysCore"] -git-tree-sha1 = "ada42fe016a858e41a29c091aa1c636eda0c3b21" +git-tree-sha1 = "eac93b2a05d33465d50e5448aefba8c06a69f738" uuid = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" -version = "0.15.23" +version = "0.15.25" [deps.ComponentArrays.extensions] ComponentArraysGPUArraysExt = "GPUArrays" @@ -434,9 +434,9 @@ version = "0.2.3" [[deps.ConcurrentUtilities]] deps = ["Serialization", "Sockets"] -git-tree-sha1 = "f36e5e8fdffcb5646ea5da81495a5a7566005127" +git-tree-sha1 = "d9d26935a0bcffc87d2613ce14c527c99fc543fd" uuid = "f0e56b4a-5159-44fe-b623-3e5288b988bb" -version = "2.4.3" +version = "2.5.0" [[deps.Conda]] deps = ["Downloads", "JSON", "VersionParsing"] @@ -539,16 +539,18 @@ uuid = "8bb1440f-4735-579b-a4ab-409b98df4dab" version = "1.9.1" [[deps.DiffEqBase]] -deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "b1e23a7fe7371934d9d538114a7e7166c1d09e05" +deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] +git-tree-sha1 = "df4954f297a09f05e1f84a049566ae93d5304477" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.161.0" +version = "6.164.1" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" DiffEqBaseChainRulesCoreExt = "ChainRulesCore" DiffEqBaseDistributionsExt = "Distributions" DiffEqBaseEnzymeExt = ["ChainRulesCore", "Enzyme"] + DiffEqBaseForwardDiffExt = ["ForwardDiff"] + DiffEqBaseGTPSAExt = "GTPSA" DiffEqBaseGeneralizedGeneratedExt = "GeneralizedGenerated" DiffEqBaseMPIExt = "MPI" DiffEqBaseMeasurementsExt = "Measurements" @@ -563,6 +565,8 @@ version = "6.161.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" Distributions = "31c24e10-a181-5473-b8eb-7969acd0382f" Enzyme = "7da242da-08ed-463a-9acd-ee780be4f1d9" + ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + GTPSA = "b27dd330-f138-47c5-815b-40db9dd9b6e8" GeneralizedGenerated = "6b9d7cbe-bcb9-11e9-073f-15a7a543e2eb" MPI = "da04e1cc-30fd-572f-bb4f-1f8673147195" Measurements = "eff96d63-e80a-5855-80a2-b1b0885c5ab7" @@ -602,9 +606,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "0c21d9ab346ae9eedb10bd33ea4520de6980a39b" +git-tree-sha1 = "258fa016b2d03f19e4d0d1cd8e30c84907af1528" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.39" +version = "0.6.42" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -767,6 +771,11 @@ git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" version = "0.8.5" +[[deps.ExproniconLite]] +git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" +uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" +version = "0.10.14" + [[deps.FFMPEG]] deps = ["FFMPEG_jll"] git-tree-sha1 = "53ebe7511fa11d33bec688a9178fac4e49eeee00" @@ -802,12 +811,6 @@ git-tree-sha1 = "acebe244d53ee1b461970f8910c235b259e772ef" uuid = "9aa1b823-49e4-5ca5-8b0f-3971ec8bab6a" version = "0.3.2" -[[deps.FastLapackInterface]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "cbf5edddb61a43669710cbc2241bc08b36d9e660" -uuid = "29a986be-02c6-4525-aec4-84b980013641" -version = "2.0.4" - [[deps.FastPower]] git-tree-sha1 = "58c3431137131577a7c379d00fea00be524338fb" uuid = "a4df4552-cc26-4903-aec0-212e50a0e84b" @@ -935,9 +938,9 @@ version = "3.4.0+2" [[deps.GPUArrays]] deps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LLVM", "LinearAlgebra", "Printf", "Random", "Reexport", "ScopedValues", "Serialization", "Statistics"] -git-tree-sha1 = "0ef97e93edced3d0e713f4cfd031cc9020e022b0" +git-tree-sha1 = "eea7b3a1964b4de269bb380462a9da604be7fcdb" uuid = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" -version = "11.2.1" +version = "11.2.2" [[deps.GPUArraysCore]] deps = ["Adapt"] @@ -947,15 +950,15 @@ version = "0.2.0" [[deps.GR]] deps = ["Artifacts", "Base64", "DelimitedFiles", "Downloads", "GR_jll", "HTTP", "JSON", "Libdl", "LinearAlgebra", "Preferences", "Printf", "Qt6Wayland_jll", "Random", "Serialization", "Sockets", "TOML", "Tar", "Test", "p7zip_jll"] -git-tree-sha1 = "9bf00ba4c45867c86251a7fd4cb646dcbeb41bf0" +git-tree-sha1 = "0ff136326605f8e06e9bcf085a356ab312eef18a" uuid = "28b8d3ca-fb5f-59d9-8090-bfdbd6d07a71" -version = "0.73.12" +version = "0.73.13" [[deps.GR_jll]] deps = ["Artifacts", "Bzip2_jll", "Cairo_jll", "FFMPEG_jll", "Fontconfig_jll", "FreeType2_jll", "GLFW_jll", "JLLWrappers", "JpegTurbo_jll", "Libdl", "Libtiff_jll", "Pixman_jll", "Qt6Base_jll", "Zlib_jll", "libpng_jll"] -git-tree-sha1 = "36d5430819123553bf31dfdceb3653ca7d9e62d7" +git-tree-sha1 = "9cb62849057df859575fc1dda1e91b82f8609709" uuid = "d2c73de3-f751-5644-a686-071e5b155ba9" -version = "0.73.12+0" +version = "0.73.13+0" [[deps.GenericSchur]] deps = ["LinearAlgebra", "Printf"] @@ -1056,9 +1059,9 @@ weakdeps = ["AbstractTrees"] [[deps.Hwloc_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "50aedf345a709ab75872f80a2779568dc0bb461b" +git-tree-sha1 = "f93a9ce66cd89c9ba7a4695a47fd93b4c6bc59fa" uuid = "e33a78d0-f292-5ffc-b300-72abe9b543c8" -version = "2.11.2+3" +version = "2.12.0+0" [[deps.HypergeometricFunctions]] deps = ["LinearAlgebra", "OpenLibm_jll", "SpecialFunctions"] @@ -1203,6 +1206,12 @@ git-tree-sha1 = "31e996f0a15c7b280ba9f76636b3ff9e2ae58c9a" uuid = "682c06a0-de6a-54ab-a142-c8b1cf79cde6" version = "0.21.4" +[[deps.Jieko]] +deps = ["ExproniconLite"] +git-tree-sha1 = "2f05ed29618da60c06a87e9c033982d4f71d0b6c" +uuid = "ae98c720-c025-4a4a-838c-29b094483192" +version = "0.2.1" + [[deps.JpegTurbo_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] git-tree-sha1 = "eac1206917768cb54957c65a615460d87b455fc1" @@ -1217,22 +1226,16 @@ version = "1.0.62" [[deps.JumpProcesses]] deps = ["ArrayInterface", "DataStructures", "DiffEqBase", "DocStringExtensions", "FunctionWrappers", "Graphs", "LinearAlgebra", "Markdown", "PoissonRandom", "Random", "RandomNumbers", "RecursiveArrayTools", "Reexport", "SciMLBase", "Setfield", "StaticArrays", "SymbolicIndexingInterface", "UnPack"] -git-tree-sha1 = "ed3b5f80be8fc7d1b0185edb862f2273e02cbec2" +git-tree-sha1 = "3ba034493e21efc9ba61268dc0faa0c383bb76a5" uuid = "ccbc3e58-028d-4f4c-8cd5-9ae44345cda5" -version = "9.14.1" +version = "9.14.2" weakdeps = ["FastBroadcast"] -[[deps.KLU]] -deps = ["LinearAlgebra", "SparseArrays", "SuiteSparse_jll"] -git-tree-sha1 = "07649c499349dad9f08dde4243a4c597064663e9" -uuid = "ef3ab10e-7fda-4108-b977-705223b18434" -version = "0.6.0" - [[deps.KernelAbstractions]] deps = ["Adapt", "Atomix", "InteractiveUtils", "MacroTools", "PrecompileTools", "Requires", "StaticArrays", "UUIDs"] -git-tree-sha1 = "d5bc0b079382e89bfa91433639bc74b9f9e17ae7" +git-tree-sha1 = "80d268b2f4e396edc5ea004d1e0f569231c71e9e" uuid = "63c18a36-062a-441e-b654-da1e3ab1ce7c" -version = "0.9.33" +version = "0.9.34" weakdeps = ["EnzymeCore", "LinearAlgebra", "SparseArrays"] [deps.KernelAbstractions.extensions] @@ -1248,9 +1251,9 @@ version = "0.6.9" [[deps.Krylov]] deps = ["LinearAlgebra", "Printf", "SparseArrays"] -git-tree-sha1 = "d1c697c53d3041a371c1da21305d0dc9259dbc8a" +git-tree-sha1 = "b29d37ce30fa401a4563b18880ab91f979a29734" uuid = "ba0b0d4f-ebba-5204-a429-3ac8c609bfb7" -version = "0.9.9" +version = "0.9.10" [[deps.LAME_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] @@ -1313,9 +1316,9 @@ version = "1.4.0" [[deps.Latexify]] deps = ["Format", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Requires"] -git-tree-sha1 = "ce5f5621cac23a86011836badfedf664a612cee4" +git-tree-sha1 = "cd714447457c660382fe634710fb56eb255ee42e" uuid = "23fbe1c1-3f47-55db-b15f-69d7ec21a316" -version = "0.16.5" +version = "0.16.6" [deps.Latexify.extensions] DataFramesExt = "DataFrames" @@ -1341,9 +1344,9 @@ version = "0.1.17" [[deps.LazyArrays]] deps = ["ArrayLayouts", "FillArrays", "LinearAlgebra", "MacroTools", "SparseArrays"] -git-tree-sha1 = "795ae125c98c58ceb1de562633703e0b120a1b17" +git-tree-sha1 = "866ce84b15e54d758c11946aacd4e5df0e60b7a3" uuid = "5078a376-72f3-5289-bfd5-ec5146d43c02" -version = "2.4.0" +version = "2.6.1" [deps.LazyArrays.extensions] LazyArraysBandedMatricesExt = "BandedMatrices" @@ -1463,10 +1466,10 @@ deps = ["Libdl", "OpenBLAS_jll", "libblastrampoline_jll"] uuid = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e" [[deps.LinearSolve]] -deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "FastLapackInterface", "GPUArraysCore", "InteractiveUtils", "KLU", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveFactorization", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Sparspak", "StaticArraysCore", "UnPack"] -git-tree-sha1 = "9d5872d134bd33dd3e120767004f760770958863" +deps = ["ArrayInterface", "ChainRulesCore", "ConcreteStructs", "DocStringExtensions", "EnumX", "GPUArraysCore", "InteractiveUtils", "Krylov", "LazyArrays", "Libdl", "LinearAlgebra", "MKL_jll", "Markdown", "PrecompileTools", "Preferences", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "StaticArraysCore", "UnPack"] +git-tree-sha1 = "6e975dea0fc1825ef3bc83c11281fdf745a69a43" uuid = "7ed4a6bd-45f5-4d41-b270-4a48e9bafcae" -version = "2.38.0" +version = "3.4.0" [deps.LinearSolve.extensions] LinearSolveBandedMatricesExt = "BandedMatrices" @@ -1475,13 +1478,16 @@ version = "2.38.0" LinearSolveCUDSSExt = "CUDSS" LinearSolveEnzymeExt = "EnzymeCore" LinearSolveFastAlmostBandedMatricesExt = "FastAlmostBandedMatrices" + LinearSolveFastLapackInterfaceExt = "FastLapackInterface" LinearSolveHYPREExt = "HYPRE" LinearSolveIterativeSolversExt = "IterativeSolvers" LinearSolveKernelAbstractionsExt = "KernelAbstractions" LinearSolveKrylovKitExt = "KrylovKit" LinearSolveMetalExt = "Metal" - LinearSolvePardisoExt = "Pardiso" - LinearSolveRecursiveArrayToolsExt = "RecursiveArrayTools" + LinearSolvePardisoExt = ["Pardiso", "SparseArrays"] + LinearSolveRecursiveFactorizationExt = "RecursiveFactorization" + LinearSolveSparseArraysExt = "SparseArrays" + LinearSolveSparspakExt = ["SparseArrays", "Sparspak"] [deps.LinearSolve.weakdeps] BandedMatrices = "aae01518-5342-5314-be14-df237901396f" @@ -1490,13 +1496,16 @@ version = "2.38.0" CUDSS = "45b445bb-4962-46a0-9369-b4df9d0f772e" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FastAlmostBandedMatrices = "9d29842c-ecb8-4973-b1e9-a27b1157504e" + FastLapackInterface = "29a986be-02c6-4525-aec4-84b980013641" HYPRE = "b5ffcf37-a2bd-41ab-a3da-4bd9bc8ad771" IterativeSolvers = "42fd0dbc-a981-5370-80f2-aaf504508153" KernelAbstractions = "63c18a36-062a-441e-b654-da1e3ab1ce7c" KrylovKit = "0b1a1467-8014-51b9-945f-bf0ae24f4b77" Metal = "dde4c033-4e86-420c-a63e-0dd931031962" Pardiso = "46dd5b70-b6fb-5a00-ae2d-e8fea33afaf2" - RecursiveArrayTools = "731186ca-8d62-57ce-b412-fbd966d074cd" + RecursiveFactorization = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" + SparseArrays = "2f01184e-e22b-5df5-ae63-d93ebab69eaf" + Sparspak = "e56a9233-b9d6-4f03-8d0f-1825330902ac" [[deps.LogDensityProblems]] deps = ["ArgCheck", "DocStringExtensions", "Random"] @@ -1557,17 +1566,6 @@ git-tree-sha1 = "f02b56007b064fbfddb4c9cd60161b6dd0f40df3" uuid = "e6f89c97-d47a-5376-807f-9c37f3926c36" version = "1.1.0" -[[deps.LoopVectorization]] -deps = ["ArrayInterface", "CPUSummary", "CloseOpenIntervals", "DocStringExtensions", "HostCPUFeatures", "IfElse", "LayoutPointers", "LinearAlgebra", "OffsetArrays", "PolyesterWeave", "PrecompileTools", "SIMDTypes", "SLEEFPirates", "Static", "StaticArrayInterface", "ThreadingUtilities", "UnPack", "VectorizationBase"] -git-tree-sha1 = "8084c25a250e00ae427a379a5b607e7aed96a2dd" -uuid = "bdcacae8-1622-11e9-2a5c-532679323890" -version = "0.12.171" -weakdeps = ["ChainRulesCore", "ForwardDiff", "SpecialFunctions"] - - [deps.LoopVectorization.extensions] - ForwardDiffExt = ["ChainRulesCore", "ForwardDiff"] - SpecialFunctionsExt = "SpecialFunctions" - [[deps.Lux]] deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] git-tree-sha1 = "39cc335d2601d4b0d74b209f718e7e3641771448" @@ -1795,16 +1793,15 @@ uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "bcfabebca63736dd36012dc9f229e1c2366bf4e7" +git-tree-sha1 = "ddb7b434c356cb4e5ce97c0b303a95f778e47bf0" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.62.0" +version = "9.64.3" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" MTKChainRulesCoreExt = "ChainRulesCore" MTKDeepDiffsExt = "DeepDiffs" MTKFMIExt = "FMI" - MTKHomotopyContinuationExt = "HomotopyContinuation" MTKInfiniteOptExt = "InfiniteOpt" MTKLabelledArraysExt = "LabelledArrays" @@ -1813,7 +1810,6 @@ version = "9.62.0" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" DeepDiffs = "ab62b9b5-e342-54a8-a765-a90f495de1a6" FMI = "14a09403-18e3-468f-ad8a-74f8dda2d9ac" - HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" InfiniteOpt = "20393b10-9daf-11e9-18c9-8db751c92c57" LabelledArrays = "2ee39098-c373-598a-b85f-a56591580800" @@ -1825,9 +1821,9 @@ version = "0.2.0" [[deps.MonteCarloMeasurements]] deps = ["Distributions", "GenericSchur", "LinearAlgebra", "MacroTools", "Random", "SLEEFPirates", "StaticArrays", "Statistics", "StatsBase"] -git-tree-sha1 = "0bfb11dcc2d76dbc3ee03b502943a73a3a87a366" +git-tree-sha1 = "ad5de9cf94bedb16dc936f049391ae7f9240f521" uuid = "0987c9cc-fe09-11e8-30f0-b96dd679fdca" -version = "1.4.3" +version = "1.4.5" [deps.MonteCarloMeasurements.extensions] ForwardDiffExt = "ForwardDiff" @@ -1843,6 +1839,12 @@ version = "1.4.3" RecipesBase = "3cdcf5f2-1ef4-517c-9805-6587b60abb01" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" +[[deps.Moshi]] +deps = ["ExproniconLite", "Jieko"] +git-tree-sha1 = "453de0fc2be3d11b9b93ca4d0fddd91196dcf1ed" +uuid = "2e0e35c7-a2e4-4343-998d-7ef72827ed2d" +version = "0.3.5" + [[deps.MozillaCACerts_jll]] uuid = "14a3606d-f60d-562e-9121-12d972cd8159" version = "2023.1.10" @@ -1866,9 +1868,9 @@ version = "1.0.20" [[deps.MutableArithmetics]] deps = ["LinearAlgebra", "SparseArrays", "Test"] -git-tree-sha1 = "9c0bc309df575c85422232eedfb74d5a9c155401" +git-tree-sha1 = "491bdcdc943fcbc4c005900d7463c9f216aabf4c" uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0" -version = "1.6.3" +version = "1.6.4" [[deps.NLSolversBase]] deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"] @@ -1878,9 +1880,9 @@ version = "7.8.3" [[deps.NNlib]] deps = ["Adapt", "Atomix", "ChainRulesCore", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "bdc9d30f151590aca0af22690f5ab7dc18a551cb" +git-tree-sha1 = "e3d9a41f0e892d070d1a2a9569d73f29b3e321e3" uuid = "872c559c-99b0-510c-b3b7-b6c96a88d5cd" -version = "0.9.27" +version = "0.9.28" [deps.NNlib.extensions] NNlibAMDGPUExt = "AMDGPU" @@ -1889,6 +1891,7 @@ version = "0.9.27" NNlibEnzymeCoreExt = "EnzymeCore" NNlibFFTWExt = "FFTW" NNlibForwardDiffExt = "ForwardDiff" + NNlibSpecialFunctionsExt = "SpecialFunctions" [deps.NNlib.weakdeps] AMDGPU = "21141c5a-9bdb-4563-92ae-f87d6854732e" @@ -1896,6 +1899,7 @@ version = "0.9.27" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341" ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210" + SpecialFunctions = "276daf66-3868-5448-9aa4-cd146d93841b" cuDNN = "02a925ec-e4fe-4b08-9a7e-0d78e3d38ccd" [[deps.NaNMath]] @@ -1927,9 +1931,9 @@ version = "5.17.0" [[deps.NonlinearSolve]] deps = ["ADTypes", "ArrayInterface", "BracketingNonlinearSolve", "CommonSolve", "ConcreteStructs", "DiffEqBase", "DifferentiationInterface", "FastClosures", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "NonlinearSolveBase", "NonlinearSolveFirstOrder", "NonlinearSolveQuasiNewton", "NonlinearSolveSpectralMethods", "PrecompileTools", "Preferences", "Reexport", "SciMLBase", "SimpleNonlinearSolve", "SparseArrays", "SparseMatrixColorings", "StaticArraysCore", "SymbolicIndexingInterface"] -git-tree-sha1 = "d0caebdb5a31e1a11ca9f7f189cdbf341ac89f0e" +git-tree-sha1 = "95def4e218a6832d158feafb9963be0337ea432c" uuid = "8913a72c-1f9b-4ce2-8d82-65094dcecaec" -version = "4.3.0" +version = "4.4.0" [deps.NonlinearSolve.extensions] NonlinearSolveFastLevenbergMarquardtExt = "FastLevenbergMarquardt" @@ -1959,9 +1963,9 @@ version = "4.3.0" [[deps.NonlinearSolveBase]] deps = ["ADTypes", "Adapt", "ArrayInterface", "CommonSolve", "Compat", "ConcreteStructs", "DifferentiationInterface", "EnzymeCore", "FastClosures", "LinearAlgebra", "Markdown", "MaybeInplace", "Preferences", "Printf", "RecursiveArrayTools", "SciMLBase", "SciMLJacobianOperators", "SciMLOperators", "StaticArraysCore", "SymbolicIndexingInterface", "TimerOutputs"] -git-tree-sha1 = "5bca24ce7b0c034dcbdc6ad6d658b02e0eed566e" +git-tree-sha1 = "8a2437b5ead050301b6a6258f226e5137e511000" uuid = "be0214bd-f91f-a760-ac4e-3421ce2b2da0" -version = "1.4.0" +version = "1.5.0" [deps.NonlinearSolveBase.extensions] NonlinearSolveBaseBandedMatricesExt = "BandedMatrices" @@ -1983,15 +1987,15 @@ version = "1.4.0" [[deps.NonlinearSolveFirstOrder]] deps = ["ADTypes", "ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LineSearch", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLJacobianOperators", "Setfield", "StaticArraysCore"] -git-tree-sha1 = "a1ea35ab0bcc99753e26d574ba1e339f19d100fa" +git-tree-sha1 = "aade7ab02ee4c80ec30dc8a2874fc67155c935f1" uuid = "5959db7a-ea39-4486-b5fe-2dd0bf03d60d" -version = "1.2.0" +version = "1.3.0" [[deps.NonlinearSolveQuasiNewton]] deps = ["ArrayInterface", "CommonSolve", "ConcreteStructs", "DiffEqBase", "LinearAlgebra", "LinearSolve", "MaybeInplace", "NonlinearSolveBase", "PrecompileTools", "Reexport", "SciMLBase", "SciMLOperators", "StaticArraysCore"] -git-tree-sha1 = "8f14b848afcfc0a2941cd3cca1bef04c987465bb" +git-tree-sha1 = "44a132cb32aeafcb35a6238fd91a2f3f8ff5c5b0" uuid = "9a2c21bd-3a47-402d-9113-8faf9a0ee114" -version = "1.1.0" +version = "1.2.0" weakdeps = ["ForwardDiff"] [deps.NonlinearSolveQuasiNewton.extensions] @@ -2040,9 +2044,9 @@ version = "1.4.3" [[deps.OpenSSL_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7493f61f55a6cce7325f197443aa80d32554ba10" +git-tree-sha1 = "a9697f1d06cc3eb3fb3ad49cc67f2cfabaac31ea" uuid = "458c3c95-2e84-50aa-8efc-19380b2a3a95" -version = "3.0.15+3" +version = "3.0.16+0" [[deps.OpenSpecFun_jll]] deps = ["Artifacts", "CompilerSupportLibraries_jll", "JLLWrappers", "Libdl"] @@ -2070,9 +2074,9 @@ version = "0.3.4" [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] -git-tree-sha1 = "e246ed7381acdc9d39042ba4c263b19f29232de9" +git-tree-sha1 = "df361b5dc1f91ffb601700a2bc4bfdcd4cc584ef" uuid = "7f7a1694-90dd-40f0-9382-eb1efda571ba" -version = "4.1.0" +version = "4.1.1" [[deps.OptimizationBase]] deps = ["ADTypes", "ArrayInterface", "DifferentiationInterface", "DocStringExtensions", "FastClosures", "LinearAlgebra", "PDMats", "Reexport", "Requires", "SciMLBase", "SparseArrays", "SparseConnectivityTracer", "SparseMatrixColorings"] @@ -2138,9 +2142,9 @@ version = "0.11.32" [[deps.Pango_jll]] deps = ["Artifacts", "Cairo_jll", "Fontconfig_jll", "FreeType2_jll", "FriBidi_jll", "Glib_jll", "HarfBuzz_jll", "JLLWrappers", "Libdl"] -git-tree-sha1 = "ed6834e95bd326c52d5675b4181386dfbe885afb" +git-tree-sha1 = "3b31172c032a1def20c98dae3f2cdc9d10e3b561" uuid = "36c8627f-9965-5494-a995-c6b170f724f3" -version = "1.55.5+0" +version = "1.56.1+0" [[deps.Parameters]] deps = ["OrderedCollections", "UnPack"] @@ -2226,16 +2230,6 @@ git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20" uuid = "85a6dd25-e78a-55b7-8502-1745935b8125" version = "0.2.4" -[[deps.PreallocationTools]] -deps = ["Adapt", "ArrayInterface", "ForwardDiff"] -git-tree-sha1 = "6c62ce45f268f3f958821a1e5192cf91c75ae89c" -uuid = "d236fae5-4411-538c-8e31-a6e3d9e00b46" -version = "0.4.24" -weakdeps = ["ReverseDiff"] - - [deps.PreallocationTools.extensions] - PreallocationToolsReverseDiffExt = "ReverseDiff" - [[deps.PrecompileTools]] deps = ["Preferences"] git-tree-sha1 = "5aa36f7049a63a1528fe8f7c3f2113413ffd4e1f" @@ -2307,9 +2301,9 @@ version = "6.7.1+1" [[deps.QuadGK]] deps = ["DataStructures", "LinearAlgebra"] -git-tree-sha1 = "cda3b045cf9ef07a08ad46731f5a3165e56cf3da" +git-tree-sha1 = "9da16da70037ba9d701192e27befedefb91ec284" uuid = "1fd47b50-473d-5c70-9696-f719f8f3bcdc" -version = "2.11.1" +version = "2.11.2" [deps.QuadGK.extensions] QuadGKEnzymeExt = "Enzyme" @@ -2382,9 +2376,9 @@ version = "0.6.12" [[deps.RecursiveArrayTools]] deps = ["Adapt", "ArrayInterface", "DocStringExtensions", "GPUArraysCore", "IteratorInterfaceExtensions", "LinearAlgebra", "RecipesBase", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface", "Tables"] -git-tree-sha1 = "ea6ad53c168c7c1c2e8f870aefda269692a8a91f" +git-tree-sha1 = "e96b644f7bfbf1015f8e42a7c7abfae2a48fafbf" uuid = "731186ca-8d62-57ce-b412-fbd966d074cd" -version = "3.28.0" +version = "3.31.0" [deps.RecursiveArrayTools.extensions] RecursiveArrayToolsFastBroadcastExt = "FastBroadcast" @@ -2408,12 +2402,6 @@ version = "3.28.0" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" Zygote = "e88e6eb3-aa80-5325-afca-941959d7151f" -[[deps.RecursiveFactorization]] -deps = ["LinearAlgebra", "LoopVectorization", "Polyester", "PrecompileTools", "StrideArraysCore", "TriangularSolve"] -git-tree-sha1 = "6db1a75507051bc18bfa131fbc7c3f169cc4b2f6" -uuid = "f2c3362d-daeb-58d1-803e-2bc74f2840b4" -version = "0.2.23" - [[deps.Reexport]] git-tree-sha1 = "45e428421666073eab6f2da5c9d310d99bb12f9b" uuid = "189a3867-3050-52da-a836-e630ba90ab69" @@ -2427,9 +2415,9 @@ version = "1.0.1" [[deps.Requires]] deps = ["UUIDs"] -git-tree-sha1 = "838a3a4188e2ded87a4f9f184b4b0d78a1e91cb7" +git-tree-sha1 = "62389eeff14780bfe55195b7204c0d8738436d64" uuid = "ae029012-a4dd-5104-9daa-d747884805df" -version = "1.3.0" +version = "1.3.1" [[deps.ResettableStacks]] deps = ["StaticArrays"] @@ -2483,13 +2471,14 @@ uuid = "476501e8-09a2-5ece-8869-fb82de89a1fa" version = "0.6.43" [[deps.SciMLBase]] -deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "Expronicon", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] -git-tree-sha1 = "46c4a97031b9437d5adbb382958820a8ee188c64" +deps = ["ADTypes", "Accessors", "ArrayInterface", "CommonSolve", "ConstructionBase", "Distributed", "DocStringExtensions", "EnumX", "FunctionWrappersWrappers", "IteratorInterfaceExtensions", "LinearAlgebra", "Logging", "Markdown", "Moshi", "PrecompileTools", "Preferences", "Printf", "RecipesBase", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLOperators", "SciMLStructures", "StaticArraysCore", "Statistics", "SymbolicIndexingInterface"] +git-tree-sha1 = "ee305515b0946db5f56af699e8b5804fee04146c" uuid = "0bca4576-84f4-4d90-8ffe-ffa030f20462" -version = "2.72.2" +version = "2.75.1" [deps.SciMLBase.extensions] SciMLBaseChainRulesCoreExt = "ChainRulesCore" + SciMLBaseMLStyleExt = "MLStyle" SciMLBaseMakieExt = "Makie" SciMLBasePartialFunctionsExt = "PartialFunctions" SciMLBasePyCallExt = "PyCall" @@ -2500,6 +2489,7 @@ version = "2.72.2" [deps.SciMLBase.weakdeps] ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + MLStyle = "d8e11817-5142-5d16-987a-aa16d5891078" Makie = "ee78f7c6-11fb-53f2-987a-cfe4a2b5a57a" PartialFunctions = "570af359-4316-4cb7-8c74-252c00c2016b" PyCall = "438e738f-606a-5dbb-bf0a-cddfbfd45ab0" @@ -2558,9 +2548,9 @@ uuid = "9e88b42a-f829-5b0c-bbe9-9e923198166b" [[deps.Setfield]] deps = ["ConstructionBase", "Future", "MacroTools", "StaticArraysCore"] -git-tree-sha1 = "e2cc6d8c88613c05e1defb55170bf5ff211fbeac" +git-tree-sha1 = "c5391c6ace3bc430ca630251d02ea9687169ca68" uuid = "efcf1570-3423-57d1-acb7-fd33fddbac46" -version = "1.1.1" +version = "1.1.2" [[deps.SharedArrays]] deps = ["Distributed", "Mmap", "Random", "Serialization"] @@ -2634,9 +2624,9 @@ version = "1.10.0" [[deps.SparseConnectivityTracer]] deps = ["ADTypes", "DocStringExtensions", "FillArrays", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "f6d636dcf886cf498b3bc484f48c37741d8aac6e" +git-tree-sha1 = "6651f4663027f3b30a31429d257185f56a571184" uuid = "9f842d2f-2579-4b1d-911e-f412cf18a3f5" -version = "0.6.10" +version = "0.6.13" [deps.SparseConnectivityTracer.extensions] SparseConnectivityTracerDataInterpolationsExt = "DataInterpolations" @@ -2660,20 +2650,14 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "45b5ef11e75839e174d5728fd1e73597e7593634" +git-tree-sha1 = "97092c0a40d6033b7da27ea15bcf75fd5b446254" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.12" +version = "0.4.13" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] SparseMatrixColoringsColorsExt = "Colors" -[[deps.Sparspak]] -deps = ["Libdl", "LinearAlgebra", "Logging", "OffsetArrays", "Printf", "SparseArrays", "Test"] -git-tree-sha1 = "342cf4b449c299d8d1ceaf00b7a49f4fbc7940e7" -uuid = "e56a9233-b9d6-4f03-8d0f-1825330902ac" -version = "0.3.9" - [[deps.SpecialFunctions]] deps = ["IrrationalConstants", "LogExpFunctions", "OpenLibm_jll", "OpenSpecFun_jll"] git-tree-sha1 = "64cca0c26b4f31ba18f13f6c12af7c85f478cfde" @@ -2715,9 +2699,9 @@ weakdeps = ["OffsetArrays", "StaticArrays"] [[deps.StaticArrays]] deps = ["LinearAlgebra", "PrecompileTools", "Random", "StaticArraysCore"] -git-tree-sha1 = "02c8bd479d26dbeff8a7eb1d77edfc10dacabc01" +git-tree-sha1 = "0feb6b9031bd5c51f9072393eb5ab3efd31bf9e4" uuid = "90137ffa-7385-5640-81b9-e52037218182" -version = "1.9.11" +version = "1.9.13" weakdeps = ["ChainRulesCore", "Statistics"] [deps.StaticArrays.extensions] @@ -2777,15 +2761,15 @@ version = "0.3.7" [[deps.StringManipulation]] deps = ["PrecompileTools"] -git-tree-sha1 = "a6b1675a536c5ad1a60e5a5153e1fee12eb146e3" +git-tree-sha1 = "725421ae8e530ec29bcbdddbe91ff8053421d023" uuid = "892a3eda-7b42-436c-8928-eab12a02cf0e" -version = "0.4.0" +version = "0.4.1" [[deps.StructArrays]] deps = ["ConstructionBase", "DataAPI", "Tables"] -git-tree-sha1 = "9537ef82c42cdd8c5d443cbc359110cbb36bae10" +git-tree-sha1 = "5a3a31c41e15a1e042d60f2f4942adccba05d3c9" uuid = "09ab397b-f2b6-538f-b94a-2f83cf4a842a" -version = "0.6.21" +version = "0.7.0" weakdeps = ["Adapt", "GPUArraysCore", "KernelAbstractions", "LinearAlgebra", "SparseArrays", "StaticArrays"] [deps.StructArrays.extensions] @@ -2806,9 +2790,9 @@ version = "7.2.1+1" [[deps.SymbolicIndexingInterface]] deps = ["Accessors", "ArrayInterface", "RuntimeGeneratedFunctions", "StaticArraysCore"] -git-tree-sha1 = "fd2d4f0499f6bb4a0d9f5030f5c7d61eed385e03" +git-tree-sha1 = "d6c04e26aa1c8f7d144e1a8c47f1c73d3013e289" uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5" -version = "0.3.37" +version = "0.3.38" [[deps.SymbolicLimits]] deps = ["SymbolicUtils"] @@ -2817,10 +2801,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] -git-tree-sha1 = "29093d99e5b382e917918c91debc139ca1ec7491" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] +git-tree-sha1 = "4b6e0bce80f52774c4f73bbe7853719eca024c32" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.13.0" +version = "3.16.0" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2831,10 +2815,10 @@ version = "3.13.0" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" [[deps.Symbolics]] -deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "IfElse", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "079a1ac7cb5955badc672e36700be704854a0121" +deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] +git-tree-sha1 = "326982e1f8a8214ff83cc427484acc858f975c74" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.27.0" +version = "6.29.2" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -2908,9 +2892,15 @@ version = "0.5.2" [[deps.TimerOutputs]] deps = ["ExprTools", "Printf"] -git-tree-sha1 = "d7298ebdfa1654583468a487e8e83fae9d72dac3" +git-tree-sha1 = "f57facfd1be61c42321765d3551b3df50f7e09f6" uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f" -version = "0.5.26" +version = "0.5.28" + + [deps.TimerOutputs.extensions] + FlameGraphsExt = "FlameGraphs" + + [deps.TimerOutputs.weakdeps] + FlameGraphs = "08572546-2f56-4bcf-ba4e-bab62c3a3f89" [[deps.Tokenize]] git-tree-sha1 = "468b4685af4abe0e9fd4d7bf495a6554a6276e75" @@ -2944,12 +2934,6 @@ version = "0.4.84" OnlineStatsBase = "925886fa-5bf2-5e8e-b522-a9147a512338" Referenceables = "42d2dcc6-99eb-4e98-b66c-637b7d73030e" -[[deps.TriangularSolve]] -deps = ["CloseOpenIntervals", "IfElse", "LayoutPointers", "LinearAlgebra", "LoopVectorization", "Polyester", "Static", "VectorizationBase"] -git-tree-sha1 = "be986ad9dac14888ba338c2554dcfec6939e1393" -uuid = "d5829a12-d9aa-46ab-831f-fb7c9ab06edf" -version = "0.2.1" - [[deps.Tricks]] git-tree-sha1 = "6cae795a5a9313bbb4f60683f7263318fc7d1505" uuid = "410a4b4d-49e4-4fbc-ab6d-cb71b17b3775" @@ -3093,9 +3077,9 @@ version = "1.0.0" [[deps.XML2_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libiconv_jll", "Zlib_jll"] -git-tree-sha1 = "a2fccc6559132927d4c5dc183e3e01048c6dcbd6" +git-tree-sha1 = "b8b243e47228b4a3877f1dd6aee0c5d56db7fcf4" uuid = "02c8fc9c-b97f-50b9-bbe4-9be30ff0a78a" -version = "2.13.5+0" +version = "2.13.6+1" [[deps.XSLT_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Libgcrypt_jll", "Libgpg_error_jll", "Libiconv_jll", "XML2_jll", "Zlib_jll"] @@ -3255,9 +3239,9 @@ version = "1.5.1+0" [[deps.YAML]] deps = ["Base64", "Dates", "Printf", "StringEncodings"] -git-tree-sha1 = "dea63ff72079443240fbd013ba006bcbc8a9ac00" +git-tree-sha1 = "b46894beba6c05cd185d174654479aaec09ea6b1" uuid = "ddb6d928-2868-570f-bddf-ab3f9cf99eb6" -version = "0.4.12" +version = "0.4.13" [[deps.ZMQ]] deps = ["FileWatching", "PrecompileTools", "Sockets", "ZeroMQ_jll"] @@ -3278,9 +3262,9 @@ version = "1.2.13+1" [[deps.Zstd_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "622cf78670d067c738667aaa96c553430b65e269" +git-tree-sha1 = "446b23e73536f84e8037f5dce465e92275f6a308" uuid = "3161d3a3-bdf6-5164-811a-617609db77b4" -version = "1.5.7+0" +version = "1.5.7+1" [[deps.Zygote]] deps = ["AbstractFFTs", "ChainRules", "ChainRulesCore", "DiffRules", "Distributed", "FillArrays", "ForwardDiff", "GPUArrays", "GPUArraysCore", "IRTools", "InteractiveUtils", "LinearAlgebra", "LogExpFunctions", "MacroTools", "NaNMath", "PrecompileTools", "Random", "Requires", "SparseArrays", "SpecialFunctions", "Statistics", "ZygoteRules"] @@ -3394,9 +3378,9 @@ version = "1.52.0+1" [[deps.oneTBB_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl"] -git-tree-sha1 = "7d0ea0f4895ef2f5cb83645fa689e52cb55cf493" +git-tree-sha1 = "d5a767a3bb77135a99e433afe0eb14cd7f6914c3" uuid = "1317d2d5-d96f-522e-a858-c73665f53c3e" -version = "2021.12.0+0" +version = "2022.0.0+0" [[deps.p7zip_jll]] deps = ["Artifacts", "Libdl"] diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index ece08cb87..704e731dc 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -20,8 +20,8 @@ using DelimitedFiles using QuasiMonteCarlo, Random import ModelingToolkit: Interval, infimum, supremum -function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added time_limit parameter (default 1 hour in seconds) - ## DECLARATIONS +function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) + ## DECLARATIONS @parameters t x1 x2 x3 x4 @variables u(..) @@ -43,10 +43,10 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t dx4 = x4width / x4MeshNum domains = [t ∈ Interval(0.0, tmax), - x1 ∈ Interval(0.0, x1width), - x2 ∈ Interval(0.0, x2width), - x3 ∈ Interval(0.0, x3width), - x4 ∈ Interval(0.0, x4width)] + x1 ∈ Interval(0.0, x1width), + x2 ∈ Interval(0.0, x2width), + x3 ∈ Interval(0.0, x3width), + x4 ∈ Interval(0.0, x4width)] # Define the coordinates ts = 0.0:dt:tmax @@ -69,28 +69,22 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t # Neural Network setup n = 10 - - # Create the neural network with explicit CPU device chain = Lux.Chain( Lux.Dense(5 => n, tanh), Lux.Dense(n => n, tanh), - Lux.Dense(n => 1, identity) + Lux.Dense(n => 1) ) # Initialize parameters with random seed rng = Random.default_rng() - init_params, st = Lux.setup(rng, chain) - - training_strategy = NeuralPDE.QuasiRandomTraining( - 500; # Number of points for domain - bcs_points = 50, # Number of points for boundary conditions - ) + Random.seed!(rng, 1234) # For reproducibility + ps, st = Lux.setup(rng, chain) # Create the PINN discretization = PhysicsInformedNN( chain, - training_strategy; - init_params = init_params, + strategy; + init_params = ps, states = st ) @@ -99,8 +93,8 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t eq, bcs, domains, - [t,x1,x2,x3,x4], - [u(t,x1,x2,x3,x4)] + [t, x1, x2, x3, x4], + [u(t, x1, x2, x3, x4)] ) # Discretize @@ -130,6 +124,7 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t return true end + println("Current loss: $l") return false catch e @warn "Callback error: $e" @@ -150,7 +145,7 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) # Added t domain = [ts, x1s, x2s, x3s, x4s] u_predict = try - [reshape([first(phi([t,x1,x2,x3,x4], res.minimizer)) + [reshape([first(phi([t, x1, x2, x3, x4], res.minimizer)) for x1 in x1s, x2 in x2s, x3 in x3s, x4 in x4s], (length(x1s), length(x2s), length(x3s), length(x4s))) for t in ts] @@ -170,10 +165,10 @@ end maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS -strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 100, batch = 0), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), - NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 100), +strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), + NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), NeuralPDE.StochasticTraining(400 ; bcs_points= 50), NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] From b1a83cf240bd144546dc746e945a79b4f4fd2a74 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Thu, 6 Mar 2025 15:11:42 +0530 Subject: [PATCH 18/22] Fixed allen_cahn.jmd --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 6 +----- 1 file changed, 1 insertion(+), 5 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 704e731dc..4bd693479 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -166,7 +166,6 @@ maxIters = [(1,1,1,1,1,1,1000),(1,1,1,1,300,300,300)] #iters for ADAM/LBFGS # maxIters = [(1,1,1,1,1,1,10),(1,1,1,3,3,3,3)] #iters for ADAM/LBFGS strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), - NeuralPDE.QuadratureTraining(quadrature_alg = HCubatureJL(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100, batch = 0), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLh(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.QuadratureTraining(quadrature_alg = CubatureJLp(), reltol = 1e-4, abstol = 1e-4, maxiters = 1100), NeuralPDE.GridTraining(0.2), @@ -174,7 +173,6 @@ strategies = [NeuralPDE.QuadratureTraining(quadrature_alg = CubaCuhre(), reltol NeuralPDE.QuasiRandomTraining(400 ; bcs_points= 50)] strategies_short_name = ["CubaCuhre", - "HCubatureJL", "CubatureJLh", "CubatureJLp", "GridTraining", @@ -222,7 +220,6 @@ plot!(error, times["31"], error_res["31"], yaxis=:log10, label = string(strategi plot!(error, times["41"], error_res["41"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[1])) plot!(error, times["51"], error_res["51"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[1])) plot!(error, times["61"], error_res["61"], yaxis=:log10, label = string(strategies_short_name[6], " + " , minimizers_short_name[1])) -plot!(error, times["71"], error_res["71"], yaxis=:log10, label = string(strategies_short_name[7], " + " , minimizers_short_name[1])) plot!(error, times["12"], error_res["12"], yaxis=:log10, label = string(strategies_short_name[1], " + " , minimizers_short_name[2])) @@ -230,8 +227,7 @@ plot!(error, times["22"], error_res["22"], yaxis=:log10, label = string(strategi plot!(error, times["32"], error_res["32"], yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[2])) plot!(error, times["42"], error_res["42"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[2])) plot!(error, times["52"], error_res["52"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[2])) -plot!(error, times["62"], error_res["62"], yaxis=:log10, label = string(strategies_short_name[6], " + " , minimizers_short_name[2])) -plot!(error, times["72"], error_res["72"], yaxis=:log10, title = string("Allen Cahn convergence ADAM/LBFGS"), ylabel = "log(error)",xlabel = "t", label = string(strategies_short_name[7], " + " , minimizers_short_name[2])) +plot!(error, times["62"], error_res["62"], yaxis=:log10, title = string("Allen Cahn convergence ADAM/LBFGS"), ylabel = "log(error)",xlabel = "t", label = string(strategies_short_name[6], " + " , minimizers_short_name[2])) ``` ```julia, echo = false From ff1baa288e1c37c8fb39b387696fc97a44a22166 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sun, 9 Mar 2025 13:57:57 +0530 Subject: [PATCH 19/22] Updates --- benchmarks/PINNErrorsVsTime/Manifest.toml | 117 ++++++----- benchmarks/PINNErrorsVsTime/Project.toml | 3 +- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 187 ++++++++---------- 3 files changed, 150 insertions(+), 157 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index 093ff8202..d4f170fcd 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -1,13 +1,13 @@ # This file is machine-generated - editing it directly is not advised -julia_version = "1.10.5" +julia_version = "1.10.8" manifest_format = "2.0" -project_hash = "8a9d6325eca5f9e893507c4ceff91174f109c29d" +project_hash = "86fba8040deb49648d7fe7dd28706b1ea88d6f99" [[deps.ADTypes]] -git-tree-sha1 = "fb97701c117c8162e84dfcf80215caa904aef44f" +git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" uuid = "47edcb42-4c32-4615-8424-f2b9edc5f35b" -version = "1.13.0" +version = "1.14.0" weakdeps = ["ChainRulesCore", "ConstructionBase", "EnzymeCore"] [deps.ADTypes.extensions] @@ -540,9 +540,9 @@ version = "1.9.1" [[deps.DiffEqBase]] deps = ["ArrayInterface", "ConcreteStructs", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "FastClosures", "FastPower", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "SciMLStructures", "Setfield", "Static", "StaticArraysCore", "Statistics", "TruncatedStacktraces"] -git-tree-sha1 = "df4954f297a09f05e1f84a049566ae93d5304477" +git-tree-sha1 = "615e8358608628b9768275f4bd8c237724e72f08" uuid = "2b5f629d-d688-5b77-993f-72d75c75574e" -version = "6.164.1" +version = "6.164.2" [deps.DiffEqBase.extensions] DiffEqBaseCUDAExt = "CUDA" @@ -578,9 +578,9 @@ version = "6.164.1" [[deps.DiffEqCallbacks]] deps = ["ConcreteStructs", "DataStructures", "DiffEqBase", "DifferentiationInterface", "Functors", "LinearAlgebra", "Markdown", "RecipesBase", "RecursiveArrayTools", "SciMLBase", "StaticArraysCore"] -git-tree-sha1 = "b1f970a2873a2cf76ce35fb0ed2b755a11b31052" +git-tree-sha1 = "c4966e57a993a181b6d613cf0d267c46fe49139d" uuid = "459566f4-90b8-5000-8ac3-15dfb0a30def" -version = "4.1.0" +version = "4.3.0" [[deps.DiffEqNoiseProcess]] deps = ["DiffEqBase", "Distributions", "GPUArraysCore", "LinearAlgebra", "Markdown", "Optim", "PoissonRandom", "QuadGK", "Random", "Random123", "RandomNumbers", "RecipesBase", "RecursiveArrayTools", "ResettableStacks", "SciMLBase", "StaticArraysCore", "Statistics"] @@ -606,9 +606,9 @@ version = "1.15.1" [[deps.DifferentiationInterface]] deps = ["ADTypes", "LinearAlgebra"] -git-tree-sha1 = "258fa016b2d03f19e4d0d1cd8e30c84907af1528" +git-tree-sha1 = "479214d2988a837e6d21ac38afdcb03cb2d0994e" uuid = "a0c0ee7d-e4b9-4e03-894e-1c5f64a51d63" -version = "0.6.42" +version = "0.6.43" [deps.DifferentiationInterface.extensions] DifferentiationInterfaceChainRulesCoreExt = "ChainRulesCore" @@ -712,9 +712,9 @@ version = "0.6.1" [[deps.DynamicQuantities]] deps = ["DispatchDoctor", "TestItems", "Tricks"] -git-tree-sha1 = "4923007a8e500f13be4c0119554776993c055ece" +git-tree-sha1 = "5bf641265806eb2b4f15bb582edba53814ca738a" uuid = "06fc5a27-2a28-4c7c-a15d-362465fb6821" -version = "1.4.0" +version = "1.5.1" [deps.DynamicQuantities.extensions] DynamicQuantitiesLinearAlgebraExt = "LinearAlgebra" @@ -765,12 +765,6 @@ git-tree-sha1 = "27415f162e6028e81c72b82ef756bf321213b6ec" uuid = "e2ba6199-217a-4e67-a87a-7c52f15ade04" version = "0.1.10" -[[deps.Expronicon]] -deps = ["MLStyle", "Pkg", "TOML"] -git-tree-sha1 = "fc3951d4d398b5515f91d7fe5d45fc31dccb3c9b" -uuid = "6b7a57c9-7cc1-4fdf-b7f5-e857abae3636" -version = "0.8.5" - [[deps.ExproniconLite]] git-tree-sha1 = "c13f0b150373771b0fdc1713c97860f8df12e6c2" uuid = "55351af7-c7e9-48d6-89ff-24e801d99491" @@ -921,10 +915,10 @@ uuid = "77dc65aa-8811-40c2-897b-53d922fa7daf" version = "0.1.3" [[deps.Functors]] -deps = ["LinearAlgebra"] -git-tree-sha1 = "64d8e93700c7a3f28f717d265382d52fac9fa1c1" +deps = ["Compat", "ConstructionBase", "LinearAlgebra", "Random"] +git-tree-sha1 = "60a0339f28a233601cb74468032b5c302d5067de" uuid = "d9f16b24-f501-4c13-a1f2-28368ffc5196" -version = "0.4.12" +version = "0.5.2" [[deps.Future]] deps = ["Random"] @@ -1568,9 +1562,9 @@ version = "1.1.0" [[deps.Lux]] deps = ["ADTypes", "Adapt", "ArgCheck", "ArrayInterface", "ChainRulesCore", "Compat", "ConcreteStructs", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "GPUArraysCore", "LinearAlgebra", "LuxCore", "LuxLib", "MLDataDevices", "MacroTools", "Markdown", "NNlib", "Optimisers", "Preferences", "Random", "Reexport", "SIMDTypes", "Setfield", "Static", "StaticArraysCore", "Statistics", "WeightInitializers"] -git-tree-sha1 = "39cc335d2601d4b0d74b209f718e7e3641771448" +git-tree-sha1 = "b1bb7f8718117221f4125d11c0c0fb6dd5ab2c0c" uuid = "b2108857-7c20-44ae-9111-449ecde12c47" -version = "1.2.3" +version = "1.9.0" [deps.Lux.extensions] LuxComponentArraysExt = "ComponentArrays" @@ -1604,9 +1598,9 @@ version = "1.2.3" [[deps.LuxCore]] deps = ["Compat", "DispatchDoctor", "Random"] -git-tree-sha1 = "9f71aea19be890e429ee21adfeda1e63d01ec610" +git-tree-sha1 = "531ee8f55d96bf9693d051c587ff15c4d02cde9f" uuid = "bb33d45b-7691-41d6-9220-0943567d0623" -version = "1.1.0" +version = "1.2.3" [deps.LuxCore.extensions] LuxCoreArrayInterfaceReverseDiffExt = ["ArrayInterface", "ReverseDiff"] @@ -1614,11 +1608,12 @@ version = "1.1.0" LuxCoreChainRulesCoreExt = "ChainRulesCore" LuxCoreEnzymeCoreExt = "EnzymeCore" LuxCoreFunctorsExt = "Functors" - LuxCoreMLDataDevicesExt = "MLDataDevices" + LuxCoreMLDataDevicesExt = ["Adapt", "MLDataDevices"] LuxCoreReactantExt = "Reactant" LuxCoreSetfieldExt = "Setfield" [deps.LuxCore.weakdeps] + Adapt = "79e6a3ab-5dfb-504d-930d-738a2a938a0e" ArrayInterface = "4fba245c-0d91-5ea0-9b3e-6abc04ee57a9" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" EnzymeCore = "f151be2c-9106-41f4-ab19-57ee4f262869" @@ -1630,10 +1625,10 @@ version = "1.1.0" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" [[deps.LuxLib]] -deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] -git-tree-sha1 = "a9e0f1477ac91623079f7a230f4de46170dc8817" +deps = ["ArrayInterface", "ChainRulesCore", "Compat", "CpuId", "DispatchDoctor", "EnzymeCore", "FastClosures", "ForwardDiff", "Functors", "Hwloc", "KernelAbstractions", "LinearAlgebra", "LuxCore", "MLDataDevices", "Markdown", "NNlib", "Polyester", "Preferences", "Random", "Reexport", "Static", "StaticArraysCore", "Statistics"] +git-tree-sha1 = "a95eb6684f2eb3bec17ac0c12e6260273363b977" uuid = "82251201-b29d-42c6-8e01-566dec8acb11" -version = "1.3.7" +version = "1.6.1" [deps.LuxLib.extensions] LuxLibAppleAccelerateExt = "AppleAccelerate" @@ -1643,6 +1638,7 @@ version = "1.3.7" LuxLibLoopVectorizationExt = "LoopVectorization" LuxLibMKLExt = "MKL" LuxLibOctavianExt = ["Octavian", "LoopVectorization"] + LuxLibReactantExt = "Reactant" LuxLibReverseDiffExt = "ReverseDiff" LuxLibSLEEFPiratesExt = "SLEEFPirates" LuxLibTrackerAMDGPUExt = ["AMDGPU", "Tracker"] @@ -1658,6 +1654,7 @@ version = "1.3.7" LoopVectorization = "bdcacae8-1622-11e9-2a5c-532679323890" MKL = "33e6dc65-8f57-5167-99aa-e5a354878fb2" Octavian = "6fd5a793-0b7e-452c-907f-f8bfe9c57db4" + Reactant = "3c362404-f566-11ee-1572-e11a4b42c853" ReverseDiff = "37e2e3b7-166d-5795-8a7a-e32c996b4267" SLEEFPirates = "476501e8-09a2-5ece-8869-fb82de89a1fa" Tracker = "9f7883ad-71c0-57eb-9f7f-b5c9e6d3789c" @@ -1683,15 +1680,16 @@ version = "2025.0.1+1" [[deps.MLDataDevices]] deps = ["Adapt", "Compat", "Functors", "Preferences", "Random"] -git-tree-sha1 = "85b47bc5a8bf0c886286638585df3bec7c9f8269" +git-tree-sha1 = "1326836c4c845cfabc542b658c8686f0c31a9911" uuid = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" -version = "1.5.3" +version = "1.9.1" [deps.MLDataDevices.extensions] MLDataDevicesAMDGPUExt = "AMDGPU" MLDataDevicesCUDAExt = "CUDA" MLDataDevicesChainRulesCoreExt = "ChainRulesCore" MLDataDevicesChainRulesExt = "ChainRules" + MLDataDevicesComponentArraysExt = "ComponentArrays" MLDataDevicesFillArraysExt = "FillArrays" MLDataDevicesGPUArraysExt = "GPUArrays" MLDataDevicesMLUtilsExt = "MLUtils" @@ -1711,6 +1709,7 @@ version = "1.5.3" CUDA = "052768ef-5323-5732-b1bb-66c8b64840ba" ChainRules = "082447d4-558c-5d27-93f4-14fc19e9eca2" ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4" + ComponentArrays = "b0b7db55-cfe3-40fc-9ded-d10e2dbeff66" FillArrays = "1a297f60-69ca-5386-bcde-b61e274b549b" GPUArrays = "0c68f7d7-f131-5f86-a1c3-88cf8149b2d7" MLUtils = "f1d291b0-491e-4a28-83b9-f70985020b54" @@ -1792,10 +1791,10 @@ version = "1.2.0" uuid = "a63ad114-7e13-5084-954f-fe012c677804" [[deps.ModelingToolkit]] -deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "Expronicon", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] -git-tree-sha1 = "ddb7b434c356cb4e5ce97c0b303a95f778e47bf0" +deps = ["AbstractTrees", "ArrayInterface", "BlockArrays", "Combinatorics", "CommonSolve", "Compat", "ConstructionBase", "DataStructures", "DiffEqBase", "DiffEqCallbacks", "DiffEqNoiseProcess", "DiffRules", "Distributed", "Distributions", "DocStringExtensions", "DomainSets", "DynamicQuantities", "EnumX", "ExprTools", "FindFirstFunctions", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "Graphs", "InteractiveUtils", "JuliaFormatter", "JumpProcesses", "Latexify", "Libdl", "LinearAlgebra", "MLStyle", "Moshi", "NaNMath", "NonlinearSolve", "OffsetArrays", "OrderedCollections", "PrecompileTools", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SCCNonlinearSolve", "SciMLBase", "SciMLStructures", "Serialization", "Setfield", "SimpleNonlinearSolve", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "URIs", "UnPack", "Unitful"] +git-tree-sha1 = "2a08947ba95676dd2df18241c06cab89dce5341e" uuid = "961ee093-0014-501f-94e3-6117800e7a78" -version = "9.64.3" +version = "9.65.0" [deps.ModelingToolkit.extensions] MTKBifurcationKitExt = "BifurcationKit" @@ -1917,11 +1916,17 @@ version = "1.0.0" uuid = "ca575930-c2e3-43a9-ace4-1e988b2c1908" version = "1.2.0" +[[deps.NeuralOperators]] +deps = ["ArgCheck", "ChainRulesCore", "ConcreteStructs", "FFTW", "Lux", "LuxCore", "LuxLib", "MLDataDevices", "NNlib", "Random", "Static", "WeightInitializers"] +git-tree-sha1 = "04644880fa80a3151bce9ba59d75eefdfef9d42d" +uuid = "ea5c82af-86e5-48da-8ee1-382d6ad7af4b" +version = "0.5.3" + [[deps.NeuralPDE]] -deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] -git-tree-sha1 = "eaf81ffa96c0b44ebbce6f396055d9ff1052715f" +deps = ["ADTypes", "Adapt", "AdvancedHMC", "ArrayInterface", "ChainRulesCore", "ComponentArrays", "ConcreteStructs", "Cubature", "Distributions", "DocStringExtensions", "DomainSets", "ForwardDiff", "Functors", "Integrals", "IntervalSets", "LinearAlgebra", "LogDensityProblems", "Lux", "LuxCore", "MCMCChains", "MLDataDevices", "ModelingToolkit", "MonteCarloMeasurements", "NeuralOperators", "Optimisers", "Optimization", "OptimizationOptimisers", "Printf", "QuasiMonteCarlo", "Random", "RecursiveArrayTools", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Statistics", "SymbolicIndexingInterface", "SymbolicUtils", "Symbolics", "WeightInitializers", "Zygote"] +git-tree-sha1 = "ddc30ae6d6ea9561dde1e57e79bf2170b27eebb6" uuid = "315f7962-48a3-4962-8226-d0f33b1235f0" -version = "5.17.0" +version = "5.18.0" [deps.NeuralPDE.extensions] NeuralPDETensorBoardLoggerExt = "TensorBoardLogger" @@ -2067,10 +2072,15 @@ version = "1.11.0" MathOptInterface = "b8f27783-ece8-5eb3-8dc8-9495eed66fee" [[deps.Optimisers]] -deps = ["ChainRulesCore", "Functors", "LinearAlgebra", "Random", "Statistics"] -git-tree-sha1 = "c9ff5c686240c31eb8570b662dd1f66f4b183116" +deps = ["ChainRulesCore", "ConstructionBase", "Functors", "LinearAlgebra", "Random", "Statistics"] +git-tree-sha1 = "c57a1a58e29a017a2b07e78d075385b981942430" uuid = "3bd65402-5787-11e9-1adc-39752487f4e2" -version = "0.3.4" +version = "0.4.5" +weakdeps = ["Adapt", "EnzymeCore"] + + [deps.Optimisers.extensions] + OptimisersAdaptExt = ["Adapt"] + OptimisersEnzymeCoreExt = "EnzymeCore" [[deps.Optimization]] deps = ["ADTypes", "ArrayInterface", "ConsoleProgressMonitor", "DocStringExtensions", "LBFGSB", "LinearAlgebra", "Logging", "LoggingExtras", "OptimizationBase", "Printf", "ProgressLogging", "Reexport", "SciMLBase", "SparseArrays", "TerminalLoggers"] @@ -2522,9 +2532,9 @@ weakdeps = ["SparseArrays", "StaticArraysCore"] [[deps.SciMLStructures]] deps = ["ArrayInterface"] -git-tree-sha1 = "0444a37a25fab98adbd90baa806ee492a3af133a" +git-tree-sha1 = "566c4ed301ccb2a44cbd5a27da5f885e0ed1d5df" uuid = "53ae85a6-f571-4167-b2af-e1d143709226" -version = "1.6.1" +version = "1.7.0" [[deps.ScientificTypesBase]] git-tree-sha1 = "a8e18eb383b5ecf1b5e6fc237eb39255044fd92b" @@ -2650,9 +2660,9 @@ version = "0.1.2" [[deps.SparseMatrixColorings]] deps = ["ADTypes", "DataStructures", "DocStringExtensions", "LinearAlgebra", "Random", "SparseArrays"] -git-tree-sha1 = "97092c0a40d6033b7da27ea15bcf75fd5b446254" +git-tree-sha1 = "e0ae9189392572abe85bc9fd4ce35e772b1e1e10" uuid = "0a514795-09f3-496d-8182-132a7b665d35" -version = "0.4.13" +version = "0.4.14" weakdeps = ["Colors"] [deps.SparseMatrixColorings.extensions] @@ -2801,10 +2811,10 @@ uuid = "19f23fe9-fdab-4a78-91af-e7b7767979c3" version = "0.2.2" [[deps.SymbolicUtils]] -deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] -git-tree-sha1 = "4b6e0bce80f52774c4f73bbe7853719eca024c32" +deps = ["AbstractTrees", "ArrayInterface", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "ExproniconLite", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TaskLocalValues", "TermInterface", "TimerOutputs", "Unityper", "WeakValueDicts"] +git-tree-sha1 = "bda149bef2e52fe889b825777ebd1724aea4566c" uuid = "d1185830-fcd6-423d-90d6-eec64667417b" -version = "3.16.0" +version = "3.17.0" [deps.SymbolicUtils.extensions] SymbolicUtilsLabelledArraysExt = "LabelledArrays" @@ -2816,9 +2826,9 @@ version = "3.16.0" [[deps.Symbolics]] deps = ["ADTypes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "LaTeXStrings", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "OffsetArrays", "PrecompileTools", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"] -git-tree-sha1 = "326982e1f8a8214ff83cc427484acc858f975c74" +git-tree-sha1 = "b587aa93817acfa302f12a03d6d8d4ff5d1eac2b" uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7" -version = "6.29.2" +version = "6.30.0" [deps.Symbolics.extensions] SymbolicsForwardDiffExt = "ForwardDiff" @@ -2858,6 +2868,11 @@ deps = ["ArgTools", "SHA"] uuid = "a4e569a6-e804-4fa4-b0f3-eef7a1d5b13e" version = "1.10.0" +[[deps.TaskLocalValues]] +git-tree-sha1 = "d155450e6dff2a8bc2fcb81dcb194bd98b0aeb46" +uuid = "ed4db957-447d-4319-bfb6-7fa9ae7ecf34" +version = "0.1.2" + [[deps.TensorCore]] deps = ["LinearAlgebra"] git-tree-sha1 = "1feb45f88d133a655e001435632f019a9a1bcdb6" @@ -3349,9 +3364,9 @@ version = "1.18.0+0" [[deps.libpng_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Zlib_jll"] -git-tree-sha1 = "055a96774f383318750a1a5e10fd4151f04c29c5" +git-tree-sha1 = "068dfe202b0a05b8332f1e8e6b4080684b9c7700" uuid = "b53b4c65-9356-5827-b1ea-8c7a1a84506f" -version = "1.6.46+0" +version = "1.6.47+0" [[deps.libsodium_jll]] deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"] diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index 950f22c44..b0c1b7c88 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -21,8 +21,7 @@ Integrals = "4" Lux = "1" ModelingToolkit = "9" NeuralPDE = "5" -Optimization = "4" OptimizationOptimJL = "0.4" Plots = "1" QuasiMonteCarlo = "0.3" -SciMLBenchmarks = "0.1" +SciMLBenchmarks = "0.1" \ No newline at end of file diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 4bd693479..feb2a1f8a 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -14,14 +14,16 @@ science-guided AI techniques. ```julia using NeuralPDE using Integrals, Cubature, Cuba -using ModelingToolkit, Optimization, OptimizationOptimJL, OptimizationOptimisers +using ModelingToolkit, Optimization, OptimizationOptimJL +using Optimisers using Lux, Plots using DelimitedFiles -using QuasiMonteCarlo, Random +using QuasiMonteCarlo import ModelingToolkit: Interval, infimum, supremum -function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) - ## DECLARATIONS +function allen_cahn(strategy, minimizer, maxIters) + + ## DECLARATIONS @parameters t x1 x2 x3 x4 @variables u(..) @@ -31,10 +33,19 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) Dxx3 = Differential(x3)^2 Dxx4 = Differential(x4)^2 + # Discretization tmax = 1.0 - x1width = x2width = x3width = x4width = 1.0 - tMeshNum = x1MeshNum = x2MeshNum = x3MeshNum = x4MeshNum = 10 + x1width = 1.0 + x2width = 1.0 + x3width = 1.0 + x4width = 1.0 + + tMeshNum = 10 + x1MeshNum = 10 + x2MeshNum = 10 + x3MeshNum = 10 + x4MeshNum = 10 dt = tmax / tMeshNum dx1 = x1width / x1MeshNum @@ -43,12 +54,11 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) dx4 = x4width / x4MeshNum domains = [t ∈ Interval(0.0, tmax), - x1 ∈ Interval(0.0, x1width), - x2 ∈ Interval(0.0, x2width), - x3 ∈ Interval(0.0, x3width), - x4 ∈ Interval(0.0, x4width)] + x1 ∈ Interval(0.0, x1width), + x2 ∈ Interval(0.0, x2width), + x3 ∈ Interval(0.0, x3width), + x4 ∈ Interval(0.0, x4width)] - # Define the coordinates ts = 0.0:dt:tmax x1s = 0.0:dx1:x1width x2s = 0.0:dx2:x2width @@ -56,108 +66,77 @@ function allen_cahn(strategy, minimizer, maxIters, time_limit=3600.0) x4s = 0.0:dx4:x4width # Operators - Δu = Dxx1(u(t,x1,x2,x3,x4)) + Dxx2(u(t,x1,x2,x3,x4)) + - Dxx3(u(t,x1,x2,x3,x4)) + Dxx4(u(t,x1,x2,x3,x4)) + Δu = Dxx1(u(t, x1, x2, x3, x4)) + Dxx2(u(t, x1, x2, x3, x4)) + Dxx3(u(t, x1, x2, x3, x4)) + Dxx4(u(t, x1, x2, x3, x4)) # Laplacian + # Equation - eq = Dt(u(t,x1,x2,x3,x4)) - Δu - u(t,x1,x2,x3,x4) + - u(t,x1,x2,x3,x4)^3 ~ 0 - - # Initial condition - initialCondition = 1 / (2 + 0.4 * (x1^2 + x2^2 + x3^2 + x4^2)) - bcs = [u(0,x1,x2,x3,x4) ~ initialCondition] - - # Neural Network setup - n = 10 - chain = Lux.Chain( - Lux.Dense(5 => n, tanh), - Lux.Dense(n => n, tanh), - Lux.Dense(n => 1) - ) - - # Initialize parameters with random seed - rng = Random.default_rng() - Random.seed!(rng, 1234) # For reproducibility - ps, st = Lux.setup(rng, chain) - - # Create the PINN - discretization = PhysicsInformedNN( - chain, - strategy; - init_params = ps, - states = st - ) - - # Setup PDE system - @named pde_system = PDESystem( - eq, - bcs, - domains, - [t, x1, x2, x3, x4], - [u(t, x1, x2, x3, x4)] - ) - - # Discretize - prob = discretize(pde_system, discretization) - - # Training setup - losses = Float64[] - error = Float64[] - times = Float64[] - timeCounter = 0.0 - startTime = time_ns() - - # Callback function with time cap - cb = function (p, l) - try - deltaT_s = time_ns() - ctime = time_ns() - startTime - timeCounter - - push!(times, ctime / 1e9) - push!(losses, l) - push!(error, l) - - timeCounter += time_ns() - deltaT_s - - if (ctime / 1e9 > time_limit) - println("Time limit of $time_limit seconds exceeded. Stopping training.") - return true - end - - println("Current loss: $l") - return false - catch e - @warn "Callback error: $e" - return false - end + eq = Dt(u(t, x1, x2, x3, x4)) - Δu - u(t, x1, x2, x3, x4) + u(t, x1, x2, x3, x4) * u(t, x1, x2, x3, x4) * u(t, x1, x2, x3, x4) ~ 0 #ALLEN CAHN EQUATION + + initialCondition = 1 / (2 + 0.4 * (x1 * x1 + x2 * x2 + x3 * x3 + x4 * x4)) # see PNAS paper + + bcs = [u(0, x1, x2, x3, x4) ~ initialCondition] #from literature + + ## NEURAL NETWORK + n = 10 #neuron number + chain = Lux.Chain(Lux.Dense(5, n, Lux.σ), Lux.Dense(n, n, Lux.σ), Lux.Dense(n, 1)) #Neural network from OptimizationFlux library + + indvars = [t, x1, x2, x3, x4] #phisically independent variables + depvars = [u(t, x1, x2, x3, x4)] #dependent (target) variable + + dim = length(domains) + + losses = [] + error = [] + times = [] + + dx_err = 0.2 + + error_strategy = GridTraining(dx_err) + + discretization_ = PhysicsInformedNN(chain, error_strategy) + @named pde_system_ = PDESystem(eq, bcs, domains, indvars, depvars) + prob_ = discretize(pde_system_, discretization_) + + function loss_function_(θ, p) + return prob_.f.f(θ, nothing) + end + + cb_ = function (p, l) + deltaT_s = time_ns() #Start a clock when the callback begins, this will evaluate questo misurerà anche il calcolo degli uniform error + + ctime = time_ns() - startTime - timeCounter #This variable is the time to use for the time benchmark plot + append!(times, ctime / 10^9) #Conversion nanosec to seconds + append!(losses, l) + loss_ = loss_function_(p.u, nothing) + append!(error, loss_) + timeCounter = timeCounter + time_ns() - deltaT_s #timeCounter sums all delays due to the callback functions of the previous iterations + + #if (ctime/10^9 > time) #if I exceed the limit time I stop the training + # return true #Stop the minimizer and continue from line 142 + #end + + return false end - # Solve with optimization - res = Optimization.solve( - prob, - minimizer; - callback = cb, - maxiters = maxIters - ) + @named pde_system = PDESystem(eq, bcs, domains, indvars, depvars) + + discretization = NeuralPDE.PhysicsInformedNN(chain, strategy) + prob = NeuralPDE.discretize(pde_system, discretization) + + timeCounter = 0.0 + startTime = time_ns() #Fix initial time (t=0) before starting the training + res = Optimization.solve(prob, minimizer, callback=cb_, maxiters=maxIters) - # Generate predictions phi = discretization.phi + + params = res.minimizer + + # Model prediction domain = [ts, x1s, x2s, x3s, x4s] - - u_predict = try - [reshape([first(phi([t, x1, x2, x3, x4], res.minimizer)) - for x1 in x1s, x2 in x2s, x3 in x3s, x4 in x4s], - (length(x1s), length(x2s), length(x3s), length(x4s))) - for t in ts] - catch e - @warn "Prediction generation failed: $e" - nothing - end - # Log the time points (ts) - println("Time points (t) for strategy $strategy and minimizer $minimizer: ", collect(ts)) + u_predict = [reshape([first(phi([t, x1, x2, x3, x4], res.minimizer)) for x1 in x1s for x2 in x2s for x3 in x3s for x4 in x4s], (length(x1s), length(x2s), length(x3s), length(x4s))) for t in ts] #matrix of model's prediction - return [error, res.minimizer, domain, times, losses] + return [error, params, domain, times, losses] end ``` From 5ff2cd5e9c586b7babb6a020010445d7524dfad4 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sun, 9 Mar 2025 13:59:33 +0530 Subject: [PATCH 20/22] Corrected spell check --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index feb2a1f8a..83c6bcede 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -80,7 +80,7 @@ function allen_cahn(strategy, minimizer, maxIters) n = 10 #neuron number chain = Lux.Chain(Lux.Dense(5, n, Lux.σ), Lux.Dense(n, n, Lux.σ), Lux.Dense(n, 1)) #Neural network from OptimizationFlux library - indvars = [t, x1, x2, x3, x4] #phisically independent variables + indvars = [t, x1, x2, x3, x4] #physically independent variables depvars = [u(t, x1, x2, x3, x4)] #dependent (target) variable dim = length(domains) From cf7de3e9cb36015c169174c5b482c0563d9c7b67 Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sun, 9 Mar 2025 19:20:22 +0530 Subject: [PATCH 21/22] Package Updates --- benchmarks/PINNErrorsVsTime/Manifest.toml | 2 +- benchmarks/PINNErrorsVsTime/Project.toml | 3 ++- 2 files changed, 3 insertions(+), 2 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/Manifest.toml b/benchmarks/PINNErrorsVsTime/Manifest.toml index d4f170fcd..7a60258a4 100644 --- a/benchmarks/PINNErrorsVsTime/Manifest.toml +++ b/benchmarks/PINNErrorsVsTime/Manifest.toml @@ -2,7 +2,7 @@ julia_version = "1.10.8" manifest_format = "2.0" -project_hash = "86fba8040deb49648d7fe7dd28706b1ea88d6f99" +project_hash = "5d74cdac0332a70f5ccb3027ea2a9f5f2e5cf971" [[deps.ADTypes]] git-tree-sha1 = "e2478490447631aedba0823d4d7a80b2cc8cdb32" diff --git a/benchmarks/PINNErrorsVsTime/Project.toml b/benchmarks/PINNErrorsVsTime/Project.toml index b0c1b7c88..a818c2982 100644 --- a/benchmarks/PINNErrorsVsTime/Project.toml +++ b/benchmarks/PINNErrorsVsTime/Project.toml @@ -7,6 +7,7 @@ Lux = "b2108857-7c20-44ae-9111-449ecde12c47" MLDataDevices = "7e8f7934-dd98-4c1a-8fe8-92b47a384d40" ModelingToolkit = "961ee093-0014-501f-94e3-6117800e7a78" NeuralPDE = "315f7962-48a3-4962-8226-d0f33b1235f0" +Optimisers = "3bd65402-5787-11e9-1adc-39752487f4e2" Optimization = "7f7a1694-90dd-40f0-9382-eb1efda571ba" OptimizationOptimJL = "36348300-93cb-4f02-beb5-3c3902f8871e" OptimizationOptimisers = "42dfb2eb-d2b4-4451-abcd-913932933ac1" @@ -24,4 +25,4 @@ NeuralPDE = "5" OptimizationOptimJL = "0.4" Plots = "1" QuasiMonteCarlo = "0.3" -SciMLBenchmarks = "0.1" \ No newline at end of file +SciMLBenchmarks = "0.1" From f49d48c655fbca3e051f0bb8087bb3224391fb8b Mon Sep 17 00:00:00 2001 From: paramthakkar123 Date: Sat, 15 Mar 2025 18:30:02 +0530 Subject: [PATCH 22/22] Updates --- benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd | 28 +++++++++---------- 1 file changed, 14 insertions(+), 14 deletions(-) diff --git a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd index 83c6bcede..75bdd2b7b 100644 --- a/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd +++ b/benchmarks/PINNErrorsVsTime/allen_cahn_et.jmd @@ -193,20 +193,20 @@ end print("\n Plotting error vs times") #Plotting the first strategy with the first minimizer out from the loop to initialize the canvas current_label = string(strategies_short_name[1], " + " , minimizers_short_name[1]) -error = Plots.plot(times["11"], error_res["11"], yaxis=:log10, label = current_label)#, xlims = (0,10))#legend = true)#, size=(1200,700)) -plot!(error, times["21"], error_res["21"], yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[1])) -plot!(error, times["31"], error_res["31"], yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[1])) -plot!(error, times["41"], error_res["41"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[1])) -plot!(error, times["51"], error_res["51"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[1])) -plot!(error, times["61"], error_res["61"], yaxis=:log10, label = string(strategies_short_name[6], " + " , minimizers_short_name[1])) - - -plot!(error, times["12"], error_res["12"], yaxis=:log10, label = string(strategies_short_name[1], " + " , minimizers_short_name[2])) -plot!(error, times["22"], error_res["22"], yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[2])) -plot!(error, times["32"], error_res["32"], yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[2])) -plot!(error, times["42"], error_res["42"], yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[2])) -plot!(error, times["52"], error_res["52"], yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[2])) -plot!(error, times["62"], error_res["62"], yaxis=:log10, title = string("Allen Cahn convergence ADAM/LBFGS"), ylabel = "log(error)",xlabel = "t", label = string(strategies_short_name[6], " + " , minimizers_short_name[2])) +error = Plots.plot(times["11"], error_res["11"], xaxis=:log10, yaxis=:log10, label = current_label, legend=:outerright)#, xlims = (0,10))#legend = true)#, size=(1200,700)) +plot!(error, times["21"], error_res["21"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[1])) +plot!(error, times["31"], error_res["31"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[1])) +plot!(error, times["41"], error_res["41"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[1])) +plot!(error, times["51"], error_res["51"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[1])) +plot!(error, times["61"], error_res["61"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[6], " + " , minimizers_short_name[1])) + + +plot!(error, times["12"], error_res["12"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[1], " + " , minimizers_short_name[2])) +plot!(error, times["22"], error_res["22"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[2], " + " , minimizers_short_name[2])) +plot!(error, times["32"], error_res["32"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[3], " + " , minimizers_short_name[2])) +plot!(error, times["42"], error_res["42"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[4], " + " , minimizers_short_name[2])) +plot!(error, times["52"], error_res["52"], xaxis=:log10, yaxis=:log10, label = string(strategies_short_name[5], " + " , minimizers_short_name[2])) +plot!(error, times["62"], error_res["62"], xaxis=:log10, yaxis=:log10, title = string("Allen Cahn convergence ADAM/LBFGS"), ylabel = "log(error)",xlabel="log(t)", label = string(strategies_short_name[6], " + " , minimizers_short_name[2])) ``` ```julia, echo = false