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‎markdown/StiffODE/Bruss.md‎

Lines changed: 7 additions & 4 deletions
Original file line numberDiff line numberDiff line change
@@ -813,16 +813,18 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
813813
[5960d6e9] OrdinaryDiffEqFIRK v1.23.0
814814
[65888b18] ParameterizedFunctions v5.22.0
815815
[91a5bcdd] Plots v1.41.6
816+
[f517fe37] Polyester v0.7.19
816817
[132c30aa] ProfileSVG v0.2.2
817818
[f2c3362d] RecursiveFactorization v0.2.26
818819
[31c91b34] SciMLBenchmarks v0.1.3
819820
⌃ [90137ffa] StaticArrays v1.9.17
820821
[c3572dad] Sundials v5.1.0
821-
[0c5d862f] Symbolics v7.15.3
822+
⌃ [0c5d862f] Symbolics v7.15.3
822823
[a759f4b9] TimerOutputs v0.5.29
823824
[37e2e46d] LinearAlgebra
824825
[2f01184e] SparseArrays v1.10.0
825826
Info Packages marked with ⌃ have new versions available and may be upgradable.
827+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
826828
```
827829

828830
And the full manifest:
@@ -923,7 +925,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
923925
[14197337] GenericLinearAlgebra v0.3.19
924926
[c145ed77] GenericSchur v0.5.6
925927
⌅ [9a0b12b7] GeometricBase v0.12.10
926-
⌃ [c85262ba] GeometricEquations v0.20.4
928+
⌅ [c85262ba] GeometricEquations v0.20.4
927929
[dcce2d33] GeometricIntegrators v0.15.5
928930
[71212ab4] GeometricIntegratorsBase v0.1.11
929931
[5a33fad7] GeometricIntegratorsDiffEq v1.1.0
@@ -1068,7 +1070,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
10681070
[ae5879a3] ResettableStacks v1.2.0
10691071
[79098fc4] Rmath v0.9.0
10701072
[47965b36] RootedTrees v2.25.0
1071-
[fb486d5c] RungeKutta v0.5.18
1073+
⌃ [fb486d5c] RungeKutta v0.5.18
10721074
[7e49a35a] RuntimeGeneratedFunctions v0.5.17
10731075
[9dfe8606] SCCNonlinearSolve v1.11.0
10741076
[94e857df] SIMDTypes v0.1.0
@@ -1109,7 +1111,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
11091111
[2efcf032] SymbolicIndexingInterface v0.3.46
11101112
[19f23fe9] SymbolicLimits v1.1.0
11111113
⌃ [d1185830] SymbolicUtils v4.18.5
1112-
[0c5d862f] Symbolics v7.15.3
1114+
⌃ [0c5d862f] Symbolics v7.15.3
11131115
[3783bdb8] TableTraits v1.0.1
11141116
[bd369af6] Tables v1.12.1
11151117
[ed4db957] TaskLocalValues v0.1.3
@@ -1279,5 +1281,6 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
12791281
[8e850ede] nghttp2_jll v1.52.0+1
12801282
[3f19e933] p7zip_jll v17.4.0+2
12811283
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
1284+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
12821285
```
12831286

‎markdown/StiffODE/E5.md‎

Lines changed: 12 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -4,7 +4,7 @@ title: "E5 Work-Precision Diagrams"
44
---
55
```julia
66
using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA
7-
using LinearAlgebra, StaticArrays, RecursiveFactorization
7+
using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester
88
using OrdinaryDiffEqFIRK
99
gr()
1010

@@ -149,13 +149,13 @@ setups = [Dict(:alg=>Kvaerno4()),
149149
Dict(:alg=>Rodas5P()),
150150
Dict(:alg=>Rodas5P(), :prob_choice => 2),
151151
Dict(:alg=>ImplicitEulerExtrapolation(
152-
min_order = 4, init_order = 11, threading = OrdinaryDiffEq.PolyesterThreads())),
152+
min_order = 4, init_order = 11, threading = OrdinaryDiffEqCore.PolyesterThreads())),
153153
Dict(:alg=>ImplicitEulerExtrapolation(min_order = 4, init_order = 11, threading = false)),
154154
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(
155-
min_order = 4, init_order = 11, threading = OrdinaryDiffEq.PolyesterThreads())),
155+
min_order = 4, init_order = 11, threading = OrdinaryDiffEqCore.PolyesterThreads())),
156156
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 4, init_order = 11, threading = false)),
157157
Dict(:alg=>ImplicitHairerWannerExtrapolation(
158-
min_order = 3, init_order = 111, threading = OrdinaryDiffEq.PolyesterThreads())),
158+
min_order = 3, init_order = 111, threading = OrdinaryDiffEqCore.PolyesterThreads())),
159159
Dict(:alg=>ImplicitHairerWannerExtrapolation(min_order = 3, init_order = 11, threading = false))
160160
]
161161
wp = WorkPrecisionSet(probs, abstols, reltols, setups; verbose = false, dense = false,
@@ -164,7 +164,7 @@ plot(wp)
164164
```
165165

166166
```
167-
Error: UndefVarError: `PolyesterThreads` not defined
167+
Error: UndefVarError: `OrdinaryDiffEqCore` not defined
168168
```
169169

170170

@@ -220,16 +220,18 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
220220
[5960d6e9] OrdinaryDiffEqFIRK v1.23.0
221221
[65888b18] ParameterizedFunctions v5.22.0
222222
[91a5bcdd] Plots v1.41.6
223+
[f517fe37] Polyester v0.7.19
223224
[132c30aa] ProfileSVG v0.2.2
224225
[f2c3362d] RecursiveFactorization v0.2.26
225226
[31c91b34] SciMLBenchmarks v0.1.3
226227
⌃ [90137ffa] StaticArrays v1.9.17
227228
[c3572dad] Sundials v5.1.0
228-
[0c5d862f] Symbolics v7.15.3
229+
⌃ [0c5d862f] Symbolics v7.15.3
229230
[a759f4b9] TimerOutputs v0.5.29
230231
[37e2e46d] LinearAlgebra
231232
[2f01184e] SparseArrays v1.10.0
232233
Info Packages marked with ⌃ have new versions available and may be upgradable.
234+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
233235
```
234236

235237
And the full manifest:
@@ -330,7 +332,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
330332
[14197337] GenericLinearAlgebra v0.3.19
331333
[c145ed77] GenericSchur v0.5.6
332334
⌅ [9a0b12b7] GeometricBase v0.12.10
333-
⌃ [c85262ba] GeometricEquations v0.20.4
335+
⌅ [c85262ba] GeometricEquations v0.20.4
334336
[dcce2d33] GeometricIntegrators v0.15.5
335337
[71212ab4] GeometricIntegratorsBase v0.1.11
336338
[5a33fad7] GeometricIntegratorsDiffEq v1.1.0
@@ -475,7 +477,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
475477
[ae5879a3] ResettableStacks v1.2.0
476478
[79098fc4] Rmath v0.9.0
477479
[47965b36] RootedTrees v2.25.0
478-
[fb486d5c] RungeKutta v0.5.18
480+
⌃ [fb486d5c] RungeKutta v0.5.18
479481
[7e49a35a] RuntimeGeneratedFunctions v0.5.17
480482
[9dfe8606] SCCNonlinearSolve v1.11.0
481483
[94e857df] SIMDTypes v0.1.0
@@ -516,7 +518,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
516518
[2efcf032] SymbolicIndexingInterface v0.3.46
517519
[19f23fe9] SymbolicLimits v1.1.0
518520
⌃ [d1185830] SymbolicUtils v4.18.5
519-
[0c5d862f] Symbolics v7.15.3
521+
⌃ [0c5d862f] Symbolics v7.15.3
520522
[3783bdb8] TableTraits v1.0.1
521523
[bd369af6] Tables v1.12.1
522524
[ed4db957] TaskLocalValues v0.1.3
@@ -686,5 +688,6 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
686688
[8e850ede] nghttp2_jll v1.52.0+1
687689
[3f19e933] p7zip_jll v17.4.0+2
688690
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
691+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
689692
```
690693

‎markdown/StiffODE/Hires.md‎

Lines changed: 12 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -5,7 +5,7 @@ title: "HIRES Work-Precision Diagrams"
55
```julia
66
using OrdinaryDiffEq, ParameterizedFunctions, Plots, ODEInterfaceDiffEq, LSODA,
77
DiffEqDevTools, Sundials
8-
using LinearAlgebra, StaticArrays, RecursiveFactorization
8+
using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester
99

1010
gr() #gr(fmt=:png)
1111

@@ -365,13 +365,13 @@ setups = [
365365
Dict(:alg=>radau()),
366366
Dict(:alg=>seulex()),
367367
Dict(:alg=>ImplicitEulerExtrapolation(
368-
min_order = 4, init_order = 7, threading = OrdinaryDiffEq.PolyesterThreads())),
368+
min_order = 4, init_order = 7, threading = OrdinaryDiffEqCore.PolyesterThreads())),
369369
Dict(:alg=>ImplicitEulerExtrapolation(min_order = 4, init_order = 7, threading = false)),
370370
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(
371-
min_order = 4, init_order = 7, threading = OrdinaryDiffEq.PolyesterThreads())),
371+
min_order = 4, init_order = 7, threading = OrdinaryDiffEqCore.PolyesterThreads())),
372372
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 4, init_order = 7, threading = false)),
373373
Dict(:alg=>ImplicitHairerWannerExtrapolation(
374-
min_order = 3, init_order = 6, threading = OrdinaryDiffEq.PolyesterThreads())),
374+
min_order = 3, init_order = 6, threading = OrdinaryDiffEqCore.PolyesterThreads())),
375375
Dict(:alg=>ImplicitHairerWannerExtrapolation(min_order = 3, init_order = 6, threading = false))
376376
]
377377

@@ -391,7 +391,7 @@ plot(wp, title = "Implicit Methods: HIRES", legend = :outertopleft, size = (1000
391391
```
392392

393393
```
394-
Error: UndefVarError: `PolyesterThreads` not defined
394+
Error: UndefVarError: `OrdinaryDiffEqCore` not defined
395395
```
396396

397397

@@ -447,16 +447,18 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
447447
[5960d6e9] OrdinaryDiffEqFIRK v1.23.0
448448
[65888b18] ParameterizedFunctions v5.22.0
449449
[91a5bcdd] Plots v1.41.6
450+
[f517fe37] Polyester v0.7.19
450451
[132c30aa] ProfileSVG v0.2.2
451452
[f2c3362d] RecursiveFactorization v0.2.26
452453
[31c91b34] SciMLBenchmarks v0.1.3
453454
⌃ [90137ffa] StaticArrays v1.9.17
454455
[c3572dad] Sundials v5.1.0
455-
[0c5d862f] Symbolics v7.15.3
456+
⌃ [0c5d862f] Symbolics v7.15.3
456457
[a759f4b9] TimerOutputs v0.5.29
457458
[37e2e46d] LinearAlgebra
458459
[2f01184e] SparseArrays v1.10.0
459460
Info Packages marked with ⌃ have new versions available and may be upgradable.
461+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
460462
```
461463

462464
And the full manifest:
@@ -557,7 +559,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
557559
[14197337] GenericLinearAlgebra v0.3.19
558560
[c145ed77] GenericSchur v0.5.6
559561
⌅ [9a0b12b7] GeometricBase v0.12.10
560-
⌃ [c85262ba] GeometricEquations v0.20.4
562+
⌅ [c85262ba] GeometricEquations v0.20.4
561563
[dcce2d33] GeometricIntegrators v0.15.5
562564
[71212ab4] GeometricIntegratorsBase v0.1.11
563565
[5a33fad7] GeometricIntegratorsDiffEq v1.1.0
@@ -702,7 +704,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
702704
[ae5879a3] ResettableStacks v1.2.0
703705
[79098fc4] Rmath v0.9.0
704706
[47965b36] RootedTrees v2.25.0
705-
[fb486d5c] RungeKutta v0.5.18
707+
⌃ [fb486d5c] RungeKutta v0.5.18
706708
[7e49a35a] RuntimeGeneratedFunctions v0.5.17
707709
[9dfe8606] SCCNonlinearSolve v1.11.0
708710
[94e857df] SIMDTypes v0.1.0
@@ -743,7 +745,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
743745
[2efcf032] SymbolicIndexingInterface v0.3.46
744746
[19f23fe9] SymbolicLimits v1.1.0
745747
⌃ [d1185830] SymbolicUtils v4.18.5
746-
[0c5d862f] Symbolics v7.15.3
748+
⌃ [0c5d862f] Symbolics v7.15.3
747749
[3783bdb8] TableTraits v1.0.1
748750
[bd369af6] Tables v1.12.1
749751
[ed4db957] TaskLocalValues v0.1.3
@@ -913,5 +915,6 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
913915
[8e850ede] nghttp2_jll v1.52.0+1
914916
[3f19e933] p7zip_jll v17.4.0+2
915917
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
918+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
916919
```
917920

‎markdown/StiffODE/MKMBatteryChemistry_wpd.md‎

Lines changed: 12 additions & 9 deletions
Original file line numberDiff line numberDiff line change
@@ -21,7 +21,7 @@ This represents a realistic electrochemical system with multiple time scales and
2121
using OrdinaryDiffEq, DiffEqDevTools, Sundials, Plots, ODEInterfaceDiffEq, LSODA, LinearSolve
2222
using ProfileSVG, BenchmarkTools, Profile
2323
gr() # gr(fmt=:png)
24-
using LinearAlgebra, StaticArrays, RecursiveFactorization
24+
using LinearAlgebra, StaticArrays, RecursiveFactorization, Polyester
2525

2626
ff = begin
2727
ff = ((var"##MTIIPVar#15413", var"##MTKArg#15409", var"##MTKArg#15410", var"##MTKArg#15411")->begin
@@ -482,11 +482,11 @@ setups = [
482482
Dict(:alg=>lsoda()),
483483
Dict(:alg=>radau()),
484484
Dict(:alg=>seulex()),
485-
Dict(:alg=>ImplicitEulerExtrapolation(min_order = 5, init_order = 3,threading = OrdinaryDiffEq.PolyesterThreads())),
485+
Dict(:alg=>ImplicitEulerExtrapolation(min_order = 5, init_order = 3,threading = OrdinaryDiffEqCore.PolyesterThreads())),
486486
Dict(:alg=>ImplicitEulerExtrapolation(min_order = 5, init_order = 3,threading = false)),
487-
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = OrdinaryDiffEq.PolyesterThreads())),
487+
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = OrdinaryDiffEqCore.PolyesterThreads())),
488488
Dict(:alg=>ImplicitEulerBarycentricExtrapolation(min_order = 5, threading = false)),
489-
Dict(:alg=>ImplicitHairerWannerExtrapolation(threading = OrdinaryDiffEq.PolyesterThreads())),
489+
Dict(:alg=>ImplicitHairerWannerExtrapolation(threading = OrdinaryDiffEqCore.PolyesterThreads())),
490490
Dict(:alg=>ImplicitHairerWannerExtrapolation(threading = false)),
491491
]
492492

@@ -503,7 +503,7 @@ plot(wp, title = "Implicit Methods: MKM Battery Chemistry",legend=:outertopleft,
503503
```
504504

505505
```
506-
Error: UndefVarError: `PolyesterThreads` not defined
506+
Error: UndefVarError: `OrdinaryDiffEqCore` not defined
507507
```
508508

509509

@@ -565,16 +565,18 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
565565
[5960d6e9] OrdinaryDiffEqFIRK v1.23.0
566566
[65888b18] ParameterizedFunctions v5.22.0
567567
[91a5bcdd] Plots v1.41.6
568+
[f517fe37] Polyester v0.7.19
568569
[132c30aa] ProfileSVG v0.2.2
569570
[f2c3362d] RecursiveFactorization v0.2.26
570571
[31c91b34] SciMLBenchmarks v0.1.3
571572
⌃ [90137ffa] StaticArrays v1.9.17
572573
[c3572dad] Sundials v5.1.0
573-
[0c5d862f] Symbolics v7.15.3
574+
⌃ [0c5d862f] Symbolics v7.15.3
574575
[a759f4b9] TimerOutputs v0.5.29
575576
[37e2e46d] LinearAlgebra
576577
[2f01184e] SparseArrays v1.10.0
577578
Info Packages marked with ⌃ have new versions available and may be upgradable.
579+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
578580
```
579581

580582
And the full manifest:
@@ -675,7 +677,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
675677
[14197337] GenericLinearAlgebra v0.3.19
676678
[c145ed77] GenericSchur v0.5.6
677679
⌅ [9a0b12b7] GeometricBase v0.12.10
678-
⌃ [c85262ba] GeometricEquations v0.20.4
680+
⌅ [c85262ba] GeometricEquations v0.20.4
679681
[dcce2d33] GeometricIntegrators v0.15.5
680682
[71212ab4] GeometricIntegratorsBase v0.1.11
681683
[5a33fad7] GeometricIntegratorsDiffEq v1.1.0
@@ -820,7 +822,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
820822
[ae5879a3] ResettableStacks v1.2.0
821823
[79098fc4] Rmath v0.9.0
822824
[47965b36] RootedTrees v2.25.0
823-
[fb486d5c] RungeKutta v0.5.18
825+
⌃ [fb486d5c] RungeKutta v0.5.18
824826
[7e49a35a] RuntimeGeneratedFunctions v0.5.17
825827
[9dfe8606] SCCNonlinearSolve v1.11.0
826828
[94e857df] SIMDTypes v0.1.0
@@ -861,7 +863,7 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
861863
[2efcf032] SymbolicIndexingInterface v0.3.46
862864
[19f23fe9] SymbolicLimits v1.1.0
863865
⌃ [d1185830] SymbolicUtils v4.18.5
864-
[0c5d862f] Symbolics v7.15.3
866+
⌃ [0c5d862f] Symbolics v7.15.3
865867
[3783bdb8] TableTraits v1.0.1
866868
[bd369af6] Tables v1.12.1
867869
[ed4db957] TaskLocalValues v0.1.3
@@ -1031,5 +1033,6 @@ Status `/cache/build/exclusive-amdci1-0/julialang/scimlbenchmarks-dot-jl/benchma
10311033
[8e850ede] nghttp2_jll v1.52.0+1
10321034
[3f19e933] p7zip_jll v17.4.0+2
10331035
Info Packages marked with ⌃ and ⌅ have new versions available. Those with ⌃ may be upgradable, but those with ⌅ are restricted by compatibility constraints from upgrading. To see why use `status --outdated -m`
1036+
Warning The project dependencies or compat requirements have changed since the manifest was last resolved. It is recommended to `Pkg.resolve()` or consider `Pkg.update()` if necessary.
10341037
```
10351038

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