build based on 6f5a722

Author: Documenter.jl

previews/PR491/.documenter-siteinfo.json

@@ -1 +1 @@
-{"documenter":{"julia_version":"1.12.4","generation_timestamp":"2026-02-02T23:04:36","documenter_version":"1.16.1"}}
+{"documenter":{"julia_version":"1.12.4","generation_timestamp":"2026-02-03T08:51:18","documenter_version":"1.16.1"}}

previews/PR491/assets/Manifest.toml

@@ -1554,7 +1554,7 @@ version = "2.6.2"
 
 [[deps.StructuralIdentifiability]]
 deps = ["AbstractAlgebra", "Combinatorics", "DataStructures", "Dates", "Groebner", "IterTools", "LinearAlgebra", "Logging", "MacroTools", "Nemo", "ParamPunPam", "PrecompileTools", "Primes", "Random", "RationalFunctionFields", "TimerOutputs"]
-path = "/home/chrisrackauckas/github-runners/demeter4-11/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl"
+path = "/home/runner/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl"
 uuid = "220ca800-aa68-49bb-acd8-6037fa93a544"
 version = "0.5.18"
 weakdeps = ["ModelingToolkitBase", "SymbolicUtils", "Symbolics"]
@@ -1609,9 +1609,9 @@ version = "4.17.0"
 
 [[deps.Symbolics]]
 deps = ["ADTypes", "AbstractPlutoDingetjes", "ArrayInterface", "Bijections", "CommonWorldInvalidations", "ConstructionBase", "DataStructures", "DiffRules", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "Moshi", "MultivariatePolynomials", "MutableArithmetics", "NaNMath", "PrecompileTools", "Preferences", "Primes", "RecipesBase", "Reexport", "RuntimeGeneratedFunctions", "SciMLPublic", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArraysCore", "SymbolicIndexingInterface", "SymbolicLimits", "SymbolicUtils", "TermInterface"]
-git-tree-sha1 = "de8951bc12c78f233f31858ab5439ab7b9c1540e"
+git-tree-sha1 = "8d436135c06a97af6ed767ea0451e9fd2773f906"
 uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7"
-version = "7.11.0"
+version = "7.12.0"
 
     [deps.Symbolics.extensions]
     SymbolicsD3TreesExt = "D3Trees"

previews/PR491/export/export/index.html

@@ -13,23 +13,21 @@
   volume  = {7},
   number  = {1},
   pages   = {194-235}
-}</code></pre><h2 id="Feature-Summary"><a class="docs-heading-anchor" href="#Feature-Summary">Feature Summary</a><a id="Feature-Summary-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-Summary" title="Permalink"></a></h2><p><code>StructuralIdentifiability.jl</code> can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.</p><h2 id="Feature-List"><a class="docs-heading-anchor" href="#Feature-List">Feature List</a><a id="Feature-List-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-List" title="Permalink"></a></h2><ul><li>Local identifiability checks</li><li>Global identifiability checks</li><li>Assessment of identifiable functions of parameters and states</li><li>Model reparametrization (experimental)</li></ul><h2 id="External-tutorials"><a class="docs-heading-anchor" href="#External-tutorials">External tutorials</a><a id="External-tutorials-1"></a><a class="docs-heading-anchor-permalink" href="#External-tutorials" title="Permalink"></a></h2><p>A <a href="https://arxiv.org/abs/2505.10517">tutorial paper</a> describes some of the functionality (identifiability assessment and finding identifiable functions) in the context of epidemiological modeling (tested with the version 0.5.15 of the package).</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><ul><li><p>Please refer to the <a href="https://github.com/SciML/ColPrac/blob/master/README.md">SciML ColPrac: Contributor&#39;s Guide on Collaborative Practices for Community Packages</a> for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.</p></li><li><p>There are a few community forums:</p><ul><li>The #diffeq-bridged channel in the <a href="https://julialang.org/slack/">Julia Slack</a></li><li><a href="https://gitter.im/JuliaDiffEq/Lobby">JuliaDiffEq</a> on Gitter</li><li>On the Julia Discourse forums</li><li>See also <a href="https://sciml.ai/community/">SciML Community page</a></li></ul></li></ul><h2 id="Reproducibility"><a class="docs-heading-anchor" href="#Reproducibility">Reproducibility</a><a id="Reproducibility-1"></a><a class="docs-heading-anchor-permalink" href="#Reproducibility" title="Permalink"></a></h2><details><summary>The documentation of this SciML package was built using these direct dependencies,</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/github-runners/demeter4-11/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml`
+}</code></pre><h2 id="Feature-Summary"><a class="docs-heading-anchor" href="#Feature-Summary">Feature Summary</a><a id="Feature-Summary-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-Summary" title="Permalink"></a></h2><p><code>StructuralIdentifiability.jl</code> can assess local and global identifiability of ODE models. In addition to these straightforward identifiability queries on individual parameters, the package can distinguish between single- and multi-experiment identifiability.</p><h2 id="Feature-List"><a class="docs-heading-anchor" href="#Feature-List">Feature List</a><a id="Feature-List-1"></a><a class="docs-heading-anchor-permalink" href="#Feature-List" title="Permalink"></a></h2><ul><li>Local identifiability checks</li><li>Global identifiability checks</li><li>Assessment of identifiable functions of parameters and states</li><li>Model reparametrization (experimental)</li></ul><h2 id="External-tutorials"><a class="docs-heading-anchor" href="#External-tutorials">External tutorials</a><a id="External-tutorials-1"></a><a class="docs-heading-anchor-permalink" href="#External-tutorials" title="Permalink"></a></h2><p>A <a href="https://arxiv.org/abs/2505.10517">tutorial paper</a> describes some of the functionality (identifiability assessment and finding identifiable functions) in the context of epidemiological modeling (tested with the version 0.5.15 of the package).</p><h2 id="Contributing"><a class="docs-heading-anchor" href="#Contributing">Contributing</a><a id="Contributing-1"></a><a class="docs-heading-anchor-permalink" href="#Contributing" title="Permalink"></a></h2><ul><li><p>Please refer to the <a href="https://github.com/SciML/ColPrac/blob/master/README.md">SciML ColPrac: Contributor&#39;s Guide on Collaborative Practices for Community Packages</a> for guidance on PRs, issues, and other matters relating to contributing to StructuralIdentifiability.</p></li><li><p>There are a few community forums:</p><ul><li>The #diffeq-bridged channel in the <a href="https://julialang.org/slack/">Julia Slack</a></li><li><a href="https://gitter.im/JuliaDiffEq/Lobby">JuliaDiffEq</a> on Gitter</li><li>On the Julia Discourse forums</li><li>See also <a href="https://sciml.ai/community/">SciML Community page</a></li></ul></li></ul><h2 id="Reproducibility"><a class="docs-heading-anchor" href="#Reproducibility">Reproducibility</a><a id="Reproducibility-1"></a><a class="docs-heading-anchor-permalink" href="#Reproducibility" title="Permalink"></a></h2><details><summary>The documentation of this SciML package was built using these direct dependencies,</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Project.toml`
   [6e4b80f9] BenchmarkTools v1.6.3
   [e30172f5] Documenter v1.16.1
   [7771a370] ModelingToolkitBase v1.10.0
-  [220ca800] StructuralIdentifiability v0.5.18 `~/github-runners/demeter4-11/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`</code></pre></details><details><summary>and using this machine and Julia version.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Julia Version 1.12.4
+  [220ca800] StructuralIdentifiability v0.5.18 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`</code></pre></details><details><summary>and using this machine and Julia version.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Julia Version 1.12.4
 Commit 01a2eadb047 (2026-01-06 16:56 UTC)
 Build Info:
   Official https://julialang.org release
 Platform Info:
   OS: Linux (x86_64-linux-gnu)
-  CPU: 64 × AMD EPYC 9354 32-Core Processor
+  CPU: 4 × AMD EPYC 7763 64-Core Processor
   WORD_SIZE: 64
-  LLVM: libLLVM-18.1.7 (ORCJIT, znver4)
+  LLVM: libLLVM-18.1.7 (ORCJIT, znver3)
   GC: Built with stock GC
-Threads: 1 default, 1 interactive, 1 GC (on 64 virtual cores)
-Environment:
-  JULIA_DEPOT_PATH = /home/chrisrackauckas/github-runners/demeter4-11/.julia</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/github-runners/demeter4-11/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml`
+Threads: 1 default, 1 interactive, 1 GC (on 4 virtual cores)</code></pre></details><details><summary>A more complete overview of all dependencies and their versions is also provided.</summary><pre class="documenter-example-output"><code class="nohighlight hljs ansi">Status `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl/docs/Manifest.toml`
   [47edcb42] ADTypes v1.21.0
   [a4c015fc] ANSIColoredPrinters v0.0.1
 ⌅ [c3fe647b] AbstractAlgebra v0.47.6
@@ -163,11 +161,11 @@
   [10745b16] Statistics v1.11.1
   [7792a7ef] StrideArraysCore v0.5.8
   [ec057cc2] StructUtils v2.6.2
-  [220ca800] StructuralIdentifiability v0.5.18 `~/github-runners/demeter4-11/_work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`
+  [220ca800] StructuralIdentifiability v0.5.18 `~/work/StructuralIdentifiability.jl/StructuralIdentifiability.jl`
   [2efcf032] SymbolicIndexingInterface v0.3.46
   [19f23fe9] SymbolicLimits v1.1.0
   [d1185830] SymbolicUtils v4.17.0
-  [0c5d862f] Symbolics v7.11.0
+  [0c5d862f] Symbolics v7.12.0
   [ed4db957] TaskLocalValues v0.1.3
   [8ea1fca8] TermInterface v2.0.0
   [8290d209] ThreadingUtilities v0.5.5
@@ -239,4 +237,4 @@
   [3f19e933] p7zip_jll v17.7.0+0
 Info Packages marked with ⌅ have new versions available but compatibility constraints restrict them from upgrading. To see why use `status --outdated -m`</code></pre></details>You can also download the 
 <a href="">manifest</a> file and the
-<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Monday 2 February 2026 23:04">Monday 2 February 2026</span>. Using Julia version 1.12.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>
+<a href="">project</a> file.</article><nav class="docs-footer"><a class="docs-footer-nextpage" href="tutorials/creating_ode/">Creating ODE System »</a><div class="flexbox-break"></div><p class="footer-message">Powered by <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> and the <a href="https://julialang.org/">Julia Programming Language</a>.</p></nav></div><div class="modal" id="documenter-settings"><div class="modal-background"></div><div class="modal-card"><header class="modal-card-head"><p class="modal-card-title">Settings</p><button class="delete"></button></header><section class="modal-card-body"><p><label class="label">Theme</label><div class="select"><select id="documenter-themepicker"><option value="auto">Automatic (OS)</option><option value="documenter-light">documenter-light</option><option value="documenter-dark">documenter-dark</option><option value="catppuccin-latte">catppuccin-latte</option><option value="catppuccin-frappe">catppuccin-frappe</option><option value="catppuccin-macchiato">catppuccin-macchiato</option><option value="catppuccin-mocha">catppuccin-mocha</option></select></div></p><hr/><p>This document was generated with <a href="https://github.com/JuliaDocs/Documenter.jl">Documenter.jl</a> version 1.16.1 on <span class="colophon-date" title="Tuesday 3 February 2026 08:51">Tuesday 3 February 2026</span>. Using Julia version 1.12.4.</p></section><footer class="modal-card-foot"></footer></div></div></div></body></html>