Fix various typos found by copilot review

Author: brinkdp

docs/user-guides/tutorial-query-on-public-data.md

@@ -1,6 +1,6 @@
 # Tutorial: Running a DivBase query on a public dataset
 
-This tutorial assumes that you have an account on DivBase and have a membership in a DivBase project with at least an EDIT role (i.e. can upload files and run queries). If this is your first time using DivBase, you may want have a look at the [Quick Start guide](quick-start.md) before trying the tutorial out.
+This tutorial assumes that you have an account on DivBase and have a membership in a DivBase project with at least an EDIT role (i.e. can upload files and run queries). If this is your first time using DivBase, you may want to have a look at the [Quick Start guide](quick-start.md) before trying the tutorial out.
 
 We will use a mouse (_Mus musculus_) data set availalbe on the European Nucleotide Archive: <https://www.ebi.ac.uk/ena/browser/view/ERZ022025>. It a 5.5 Gb VCF.gz file that contains 18 samples and 66,007,044 variants.
 

docs/user-guides/vcf-dimensions.md

@@ -8,13 +8,13 @@ This allows the DivBase server to make quick checks against against the project
     An updated VCF Dimensions cache for DivBase project is a prerequisite step before submitting any queries to the DivBase server.
 
 All query commands rely on the dimensions cache to quickly resolve samples, scaffolds, and file compatibility.
-Every time a new VCF files has been added added or and existic VCF version has been replaced with a new version, run:
+Every time a new VCF file has been added or an existing VCF version has been replaced, run:
 
 ```bash
 divbase-cli dimensions update --project <PROJECT_NAME>
 
 # This will return the job ID of the submitted job. Example:
-# Job submitted successfully with task id: 123
+# Job submitted successfully with task id: 123. To check the status of your job, use the command: divbase-cli task-history id 123
 
 # Job status can be viewed with e.g.
 divbase-cli task-history id 123

docs/user-guides/vcf-query-syntax.md

@@ -14,7 +14,7 @@ divbase-cli task-history id <JOB_ID>
 
 The processing of the VCF files on the DivBase server is done with [`bcftools`](https://github.com/samtools/bcftools). DivBase will detect the VCF files in the project's data store that are needed for the query; if more than one VCF file is needed, DivBase will ensure that the files are compatible with each other according to the requirements of `bcftools` and ensure that a single results file with the subset data is returned to the user by running `bcftools merge` and `bcftools concat` on the intermediate files as needed. The result is a single VCF file that is uploaded to the projects data store and named after the job ID.
 
-Users can query the VCF data in their project with or without combining it with a [sample metadata query](docs/user-guides/sidecar-metadata.md).
+Users can query the VCF data in their project with or without combining it with a [sample metadata query](sidecar-metadata.md).
 
 Example of a VCF query that identifies the samples and VCF files to filter on in the project's datastore and then applies a subset based on genomic range:
 
@@ -404,7 +404,7 @@ See also:
 
 - [Troubleshooting](troubleshooting.md)
 - [VCF Dimensions](vcf-dimensions.md)
-- [Sample metadata query](sidecar-metadata-queries.md)
+- [Sample metadata query](sidecar-metadata.md)
 
 ## 8. Read next
 

packages/divbase-lib/src/divbase_lib/api_schemas/queries.py

@@ -152,7 +152,7 @@ def validate_sample_selection_mode(self) -> Self:
             raise ValueError("Only one of tsv_filter, samples, or all_samples may be provided.")
         if selection_count == 0:
             # Backward compatibility for historical task kwargs created before all_samples option was implemented.
-            # To ensure that task-history deserizliation does not break for existing tasks.
+            # To ensure that task-history deserialization does not break for existing tasks.
             # Could be handled by a backfilling migration instead.
             self.all_samples = True
             return self