Possible issue

[saifulkhan]

I am getting this error in my local machine, could you please check!

Download from URLs has finished
Running Uncertainty Analysis Agents
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-4:
Traceback (most recent call last):
Converting ents files to sandu SensitivityInput objects.
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-6:
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
Traceback (most recent call last):
Exception in thread Thread-7:
    self.run()
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self.run()
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_clustering_agent.py", line 71, in uncertainty_clustering_agent
    self.run()
    cluster_list = get_cluster_list(model_list)
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_clustering_agent.py", line 56, in get_cluster_list
    self._target(*self._args, **self._kwargs)
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/ents_to_sandu_agent.py", line 107, in ents_to_sandu_agent
    for model in models:
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_mean_sample_agent.py", line 34, in uncertainty_mean_sample_agent
    for model in model_list:
TypeError: 'NoneType' object is not iterable
TypeError: 'NoneType' object is not iterable
Uncertainty Clustering Complete
    for model in model_list:
Running Uncertainty Cluster Analysis
 SensitivityInput objects created from ents files.
Running Sensitivity Analysis Agents
TypeError: 'NoneType' object is not iterable
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-9:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
Exception in thread Thread-10:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self.run()
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
    self.run()
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_cluster_mean_sample_agent.py", line 59, in uncertainty_cluster_mean_sample_agent
    self._target(*self._args, **self._kwargs)
    list_of_clusters = get_cluster_list(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_clustering_agent.py", line 122, in sensitivity_clustering_agent
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_cluster_mean_sample_agent.py", line 47, in get_cluster_list
    cluster_list = get_cluster_list(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_clustering_agent.py", line 105, in get_cluster_list
    for model in models:
TypeError: 'NoneType' object is not iterable
    for model in models:
TypeError: 'NoneType' object is not iterable
Sensitivity Clustering Complete
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
Exception in thread Thread-11:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self.run()
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_range_mean_sample_agent.py", line 83, in sensitivity_clustering_range_mean_agent
    cluster_list = get_cluster_list(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_range_mean_sample_agent.py", line 48, in get_cluster_list
    for model in models:
TypeError: 'NoneType' object is not iterable

[ErikRZH]

I will look at this!

[saifulkhan]

$ uvicorn app.main:app --reload --port 4010 --host 0.0.0.0

INFO:     Will watch for changes in these directories: ['/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api']
INFO:     Uvicorn running on http://0.0.0.0:4010 (Press CTRL+C to quit)
INFO:     Started reloader process [35150] using statreload
2022-01-22 15:02:39.506 | INFO     | app.core.settings:<module>:23 - ENV = development
2022-01-22 15:02:39.973 | DEBUG    | matplotlib.cbook:_get_data_path:518 - matplotlib data path: /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/venv/lib/python3.9/site-packages/matplotlib/mpl-data
2022-01-22 15:02:39.975 | DEBUG    | matplotlib:gen_candidates:564 - CONFIGDIR=/home/saifulkhan/.config/matplotlib
2022-01-22 15:02:39.976 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - interactive is False
2022-01-22 15:02:39.976 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - platform is linux
2022-01-22 15:02:39.976 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - loaded modules: ['sys', 'builtins', '_frozen_importlib', '_imp', '_thread', '_warnings', '_weakref', '_io', 'marshal', 'posix', '_frozen_importlib_external', 'time', 'zipimport', '_codecs', 'codecs', 'encodings.aliases', 'encodings', 'encodings.utf_8', '_signal', 'encodings.latin_1', '_abc', 'abc', 'io', '__main__', '_stat', 'stat', '_collections_abc', 'genericpath', 'posixpath', 'os.path', 'os', '_sitebuiltins', '_locale', '_bootlocale', '_heapq', 'heapq', 'itertools', 'keyword', '_operator', 'operator', 'reprlib', '_collections', 'collections', 'types', '_functools', 'functools', 'importlib._bootstrap', 'importlib._bootstrap_external', 'warnings', 'importlib', 'importlib.machinery', 'collections.abc', 'contextlib', 'enum', '_sre', 'sre_constants', 'sre_parse', 'sre_compile', 'copyreg', 're', 'typing.io', 'typing.re', 'typing', 'importlib.abc', 'importlib.util', '_virtualenv', '_distutils_hack', 'mpl_toolkits', 'site', '_weakrefset', 'threading', 'signal', 'multiprocessing.process', '_struct', 'struct', '_compat_pickle', '_pickle', 'pickle', '_socket', 'math', 'select', 'selectors', 'errno', 'array', 'socket', 'multiprocessing.reduction', 'multiprocessing.context', '__mp_main__', 'multiprocessing', 'weakref', 'pkgutil', 'runpy', 'atexit', 'pwd', 'grp', '_posixsubprocess', 'subprocess', 'multiprocessing.util', 'multiprocessing.spawn', '_multiprocessing', '_posixshmem', 'multiprocessing.resource_tracker', 'concurrent', 'token', 'tokenize', 'linecache', 'traceback', '_string', 'string', 'logging', 'concurrent.futures._base', 'concurrent.futures', '_ssl', 'binascii', 'base64', 'ssl', 'asyncio.constants', '_ast', 'ast', '_opcode', 'opcode', 'dis', 'inspect', 'asyncio.format_helpers', 'asyncio.base_futures', 'asyncio.log', 'asyncio.coroutines', '_contextvars', 'contextvars', 'asyncio.exceptions', 'asyncio.base_tasks', '_asyncio', 'asyncio.events', 'asyncio.futures', 'asyncio.protocols', 'asyncio.transports', 'asyncio.sslproto', 'asyncio.locks', 'asyncio.tasks', 'asyncio.staggered', 'asyncio.trsock', 'asyncio.base_events', 'asyncio.runners', 'asyncio.queues', 'asyncio.streams', 'asyncio.subprocess', 'asyncio.threads', 'asyncio.base_subprocess', 'asyncio.selector_events', 'asyncio.unix_events', 'asyncio', '_json', 'json.scanner', 'json.decoder', 'json.encoder', 'json', '_queue', 'queue', 'copy', 'logging.handlers', 'socketserver', 'logging.config', 'fnmatch', 'ntpath', 'urllib', 'urllib.parse', 'pathlib', 'http', 'gettext', '_datetime', 'datetime', 'click._compat', 'click.globals', 'click.utils', 'click.exceptions', 'click.types', 'click._unicodefun', 'click.parser', 'click.formatting', 'click.termui', 'click.core', 'click.decorators', 'click', 'uvicorn.logging', 'asgiref', 'asgiref._pep562', 'asgiref.typing', 'yaml.error', 'yaml.tokens', 'yaml.events', 'yaml.nodes', 'yaml.reader', 'yaml.scanner', 'yaml.parser', 'yaml.composer', 'yaml.constructor', 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'pandas.core.indexes.base', 'pandas.core.arrays.interval', 'pandas.core.arrays.numpy_', 'pandas.core.arrays.period', 'pandas.core.arrays.string_', 'pandas.core.arrays.string_arrow', 'pandas.core.arrays.timedeltas', 'pandas.core.arrays', 'pandas.core.flags', 'pandas._libs.reduction', 'pandas.core.indexes.extension', 'pandas.core.indexes.category', 'pandas.core.indexes.numeric', 'pandas.core.tools.timedeltas', 'pandas.core.indexes.datetimelike', 'pandas.core.tools.times', 'pandas.core.indexes.datetimes', 'pandas.core.indexes.multi', 'pandas.core.indexes.timedeltas', 'pandas.core.indexes.interval', 'pandas.core.indexes.period', 'pandas.core.indexes.range', 'pandas.core.indexes.api', 'pandas.core.aggregation', 'pandas.core.apply', 'gc', 'pandas._libs.indexing', 'pandas.core.indexing', 'pandas.core.reshape', 'pandas._libs.internals', 'pandas._libs.writers', 'pandas.core.array_algos.quantile', 'pandas.core.array_algos.replace', 'pandas.core.internals.blocks', 'pandas.core.internals.api', 'pandas.core.internals.base', 'pandas.core.internals.array_manager', 'pandas.core.internals.ops', 'pandas.core.internals.managers', 'pandas.core.internals.concat', 'pandas.core.internals', 'pandas.core.reshape.concat', 'pandas.io.common', 'pandas.io.formats.format', 'pandas.core.describe', 'pandas.core.internals.construction', 'pandas.core.shared_docs', 'pandas._libs.window', 'pandas._libs.window.aggregations', 'pandas.core.util.numba_', 'pandas.core.window.common', 'pandas.core.window.doc', 'pandas._libs.window.indexers', 'pandas.core.window.indexers', 'pandas.core.window.numba_', 'pandas.core.window.online', 'pandas.core.window.rolling', 'pandas.core.window.ewm', 'pandas.core.window.expanding', 'pandas.core.window', 'pandas.core.generic', 'pandas.core.reshape.util', 'pandas.core.reshape.melt', 'pandas._libs.reshape', 'pandas.core.indexes.accessors', 'pandas.arrays', 'pandas.core.tools.datetimes', 'pandas.plotting._core', 'pandas.plotting._misc', 'pandas.plotting', 'pandas.core.series', 'pandas.io.formats.info', 'pandas.core.frame', 'pandas.core.groupby.base', 'pandas._libs.groupby', 'pandas.core.groupby.numba_', 'pandas.core.groupby.categorical', 'pandas.core.groupby.grouper', 'pandas.core.groupby.ops', 'pandas.core.groupby.groupby', 'pandas.core.groupby.generic', 'pandas.core.groupby', 'pandas.core.api', 'pandas.tseries.api', 'pandas.core.computation.common', 'pandas.core.computation.align', 'pandas.compat.chainmap', 'pandas.core.computation.scope', 'pandas.core.computation.ops', 'pandas.core.computation.parsing', 'pandas.core.computation.expr', 'pandas.core.computation.engines', 'pandas.core.computation.eval', 'pandas.core.computation.api', 'pandas.core.reshape.merge', 'pandas.core.reshape.pivot', 'pandas.core.reshape.reshape', 'pandas.core.reshape.tile', 'pandas.core.reshape.api', 'pandas.api.extensions', 'pandas.api.indexers', 'pandas.core.dtypes.api', 'pandas.api.types', 'pandas.api', 'pandas.util._print_versions', 'pandas.io.clipboards', 'pandas._libs.parsers', 'pandas.io.excel._util', 'pandas.io.date_converters', 'pandas.io.parsers.base_parser', 'pandas.io.parsers.c_parser_wrapper', 'pandas.io.parsers.python_parser', 'pandas.io.parsers.readers', 'pandas.io.parsers', 'pandas.io.excel._odfreader', 'pandas.io.excel._openpyxl', 'pandas.io.excel._pyxlsb', 'pandas.io.excel._xlrd', 'pandas.io.excel._base', 'pandas._libs.json', 'pandas.io.formats._color_data', 'pandas.io.formats.css', 'pandas.io.formats.excel', 'pandas.io.excel._odswriter', 'pandas.io.excel._xlsxwriter', 'pandas.io.excel._xlwt', 'pandas.io.excel', 'pandas.io.feather_format', 'pandas.io.gbq', 'pandas.io.html', 'pandas.io.json._normalize', 'pandas.io.json._table_schema', 'pandas.io.json._json', 'pandas.io.json', 'pandas.io.orc', 'pandas.io.parquet', 'pandas.compat.pickle_compat', 'pandas.io.pickle', 'pandas.core.computation.pytables', 'pandas.io.pytables', 'pandas.io.sas.sasreader', 'pandas.io.sas', 'pandas.io.spss', 'pandas.io.sql', 'pandas.io.stata', 'pandas.io.xml', 'pandas.io.api', 'pandas.util._tester', 'pandas._testing._random', 'pandas._testing.contexts', 'pandas._testing._io', 'pandas._testing._warnings', 'cmath', 'pandas._libs.testing', 'pandas._testing.asserters', 'pandas._testing.compat', 'pandas._testing', 'pandas.testing', 'pandas._version', 'pandas', 'sandu', 'sandu.gaussian_process_emulator', 'sklearn._config', 'sklearn._distributor_init', 'sklearn.__check_build._check_build', 'sklearn.__check_build', 'timeit', 'scipy._lib._testutils', 'scipy._lib', 'scipy._lib.deprecation', 'scipy.__config__', 'scipy.version', 'scipy._distributor_init', 'scipy._lib._pep440', 'scipy._lib._ccallback_c', 'scipy._lib._ccallback', 'scipy', 'scipy._lib._util', 'scipy.sparse.sputils', 'scipy.sparse.base', 'scipy.sparse._sparsetools', 'scipy.sparse.data', 'scipy.sparse.dia', 'scipy.sparse._index', 'scipy.sparse.compressed', 'scipy.sparse.csr', 'scipy.sparse.csc', 'scipy.sparse._csparsetools', 'scipy.sparse.lil', 'scipy.sparse.dok', 'scipy.sparse.coo', 'scipy.sparse.bsr', 'scipy.sparse.construct', 'scipy.sparse.extract', 'scipy.sparse._matrix_io', 'scipy.sparse.csgraph._laplacian', 'scipy.sparse.csgraph._tools', 'scipy.sparse.csgraph._validation', 'scipy.sparse.csgraph._shortest_path', 'scipy.sparse.csgraph._traversal', 'scipy.sparse.csgraph._min_spanning_tree', 'scipy.sparse.csgraph._flow', 'scipy.sparse.csgraph._matching', 'scipy.sparse.csgraph._reordering', 'scipy.sparse.csgraph', 'scipy.sparse', 'sklearn.utils.murmurhash', 'sklearn.utils.class_weight', 'pydoc', 'joblib.hashing', 'joblib.disk', 'joblib.logger', 'joblib.func_inspect', 'setuptools._distutils', 'distutils.debug', 'distutils.errors', 'getopt', 'distutils.fancy_getopt', 'distutils.dep_util', 'setuptools._distutils.log', 'distutils.spawn', 'distutils.py35compat', 'distutils.util', 'distutils.dist', 'setuptools._distutils.dir_util', 'setuptools._distutils.file_util', 'distutils.dir_util', 'setuptools._distutils.archive_util', 'distutils.cmd', 'configparser', 'distutils.config', 'distutils.extension', 'distutils.core', '_distutils_hack.override', 'setuptools._deprecation_warning', 'setuptools.version', 'distutils.filelist', 'setuptools.monkey', 'setuptools.extension', 'distutils.log', 'distutils.command', 'setuptools.extern', 'setuptools._vendor', 'setuptools._vendor.packaging.__about__', 'setuptools._vendor.packaging', 'setuptools.extern.packaging', 'setuptools._vendor.ordered_set', 'setuptools.extern.ordered_set', 'setuptools._vendor.more_itertools.recipes', 'setuptools._vendor.more_itertools.more', 'setuptools._vendor.more_itertools', 'setuptools.extern.more_itertools', 'distutils.command.bdist', 'setuptools.command', 'setuptools.windows_support', 'setuptools.extern.packaging._structures', 'setuptools.extern.packaging.version', 'setuptools._vendor.packaging._manylinux', 'setuptools._vendor.packaging._musllinux', 'setuptools.extern.packaging.tags', 'setuptools.extern.packaging.utils', 'setuptools.extern.packaging.specifiers', 'setuptools.config', 'setuptools.dist', 'setuptools.py34compat', 'setuptools._imp', 'setuptools.depends', 'setuptools.logging', 'distutils.file_util', 'distutils.ccompiler', 'setuptools.msvc', 'setuptools', 'distutils', 'distutils.version', 'joblib.backports', 'joblib.compressor', 'joblib.numpy_pickle_utils', 'joblib.numpy_pickle_compat', 'joblib.numpy_pickle', 'joblib._store_backends', 'joblib.memory', 'joblib._multiprocessing_helpers', 'joblib._deprecated_my_exceptions', 'joblib.my_exceptions', 'joblib.externals', 'joblib.externals.loky._base', 'joblib.externals.loky.backend.compat_posix', 'joblib.externals.loky.backend.compat', 'joblib.externals.loky.backend.process', 'joblib.externals.loky.backend.context', 'multiprocessing.synchronize', 'joblib.externals.loky.backend', 'joblib.externals.loky.backend._posix_reduction', 'joblib.externals.cloudpickle.compat', 'joblib.externals.cloudpickle.cloudpickle', 'joblib.externals.cloudpickle.cloudpickle_fast', 'joblib.externals.cloudpickle', 'joblib.externals.loky.backend.reduction', 'joblib.externals.loky.backend.queues', 'joblib.externals.loky.backend.utils', 'joblib.externals.loky.initializers', 'joblib.externals.loky.process_executor', 'joblib.externals.loky.reusable_executor', 'joblib.externals.loky.cloudpickle_wrapper', 'joblib.externals.loky', 'joblib.externals.loky.backend.spawn', 'joblib.externals.loky.backend.resource_tracker', 'joblib._memmapping_reducer', 'multiprocessing.pool', 'joblib.pool', 'joblib.executor', 'joblib._parallel_backends', 'joblib.parallel', 'joblib', 'sklearn.utils._joblib', 'sklearn.utils.deprecation', 'sklearn.exceptions', 'scipy.spatial.ckdtree', 'scipy.spatial.kdtree', 'scipy._lib.messagestream', 'scipy.spatial.qhull', 'scipy.spatial._voronoi', 'scipy.spatial._spherical_voronoi', 'scipy._lib.decorator', 'scipy.spatial._plotutils', 'scipy.linalg._fblas', 'scipy.linalg.blas', 'scipy.linalg._flapack', 'scipy.linalg.lapack', 'scipy.linalg.misc', 'scipy.linalg._flinalg', 'scipy.linalg.flinalg', 'scipy.linalg.decomp', 'scipy.linalg.decomp_svd', 'scipy.linalg._solve_toeplitz', 'scipy.linalg.basic', 'scipy.linalg.decomp_lu', 'scipy.linalg._decomp_ldl', 'scipy.linalg.decomp_cholesky', 'scipy.linalg.decomp_qr', 'scipy.linalg._decomp_qz', 'scipy.linalg.decomp_schur', 'scipy.linalg._decomp_polar', 'scipy.linalg.special_matrices', 'scipy.linalg._expm_frechet', 'scipy.linalg._matfuncs_sqrtm_triu', 'scipy.linalg._matfuncs_sqrtm', 'scipy.linalg.matfuncs', 'scipy.linalg._solvers', 'scipy.linalg._procrustes', 'scipy.linalg.cython_blas', 'scipy.linalg.cython_lapack', 'scipy.linalg._decomp_update', 'scipy.linalg._sketches', 'scipy.linalg._decomp_cossin', 'scipy.linalg', 'scipy.spatial._procrustes', 'scipy.spatial._distance_wrap', 'scipy.spatial._hausdorff', 'scipy.special.sf_error', 'scipy.special._ufuncs_cxx', 'scipy.special._ufuncs', 'scipy.special.specfun', 'scipy.special.orthogonal', 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'scipy.sparse.linalg.isolve._iterative', 'scipy.sparse.linalg.interface', 'scipy.sparse.linalg.isolve.utils', 'scipy._lib._threadsafety', 'scipy.sparse.linalg.isolve.iterative', 'scipy.sparse.linalg.isolve.minres', 'scipy.sparse.linalg.isolve._gcrotmk', 'scipy.sparse.linalg.isolve.lgmres', 'scipy.sparse.linalg.isolve.lsqr', 'scipy.sparse.linalg.isolve.lsmr', 'scipy.sparse.linalg.isolve', 'scipy.sparse.linalg.dsolve._superlu', 'scipy.sparse.linalg.dsolve.linsolve', 'scipy.sparse.linalg.dsolve._add_newdocs', 'scipy.sparse.linalg.dsolve', 'scipy.sparse.linalg.eigen.arpack._arpack', 'scipy.sparse.linalg.eigen.lobpcg.lobpcg', 'scipy.sparse.linalg.eigen.lobpcg', 'scipy.sparse.linalg.eigen.arpack.arpack', 'scipy.sparse.linalg.eigen.arpack', 'scipy.sparse.linalg.eigen', 'scipy.sparse.linalg._expm_multiply', 'scipy.sparse.linalg.matfuncs', 'scipy.sparse.linalg._onenormest', 'scipy.sparse.linalg._norm', 'scipy.sparse.linalg', 'scipy.optimize._group_columns', 'scipy.optimize._numdiff', 'scipy.optimize._hessian_update_strategy', 'scipy.optimize._differentiable_functions', 'scipy.optimize.optimize', 'scipy.optimize._trustregion', 'scipy.optimize._trustregion_dogleg', 'scipy.optimize._trustregion_ncg', 'scipy.optimize._trlib._trlib', 'scipy.optimize._trlib', 'scipy.optimize._trustregion_krylov', 'scipy.optimize._trustregion_exact', 'unittest.util', 'unittest.result', 'difflib', 'unittest.case', 'unittest.suite', 'unittest.loader', 'argparse', 'unittest.signals', 'unittest.runner', 'unittest.main', 'unittest', 'numpy.testing._private', 'numpy.testing._private.utils', 'numpy.testing._private.decorators', 'numpy.testing._private.nosetester', 'numpy.testing', 'scipy.optimize._constraints', 'scipy.optimize._trustregion_constr.projections', 'scipy.optimize._trustregion_constr.qp_subproblem', 'scipy.optimize._trustregion_constr.equality_constrained_sqp', 'scipy.optimize._trustregion_constr.canonical_constraint', 'scipy.optimize._trustregion_constr.tr_interior_point', 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'scipy.interpolate._cubic', 'scipy.interpolate.ndgriddata', 'scipy.interpolate._pade', 'scipy.interpolate', 'scipy.special.cython_special', 'scipy.stats._stats', 'scipy.stats._rvs_sampling', 'scipy.stats._tukeylambda_stats', 'scipy.stats._ksstats', 'beta_ufunc', 'scipy.stats._boost.beta_ufunc', 'binom_ufunc', 'scipy.stats._boost.binom_ufunc', 'nbinom_ufunc', 'scipy.stats._boost.nbinom_ufunc', 'scipy.stats._boost', 'scipy.stats._continuous_distns', 'scipy.stats.biasedurn', 'scipy.stats._discrete_distns', 'scipy.stats._entropy', 'scipy.stats.distributions', 'scipy._lib._bunch', 'scipy.stats._stats_mstats_common', 'scipy.stats.mstats_basic', 'scipy.stats._wilcoxon_data', 'scipy.stats._hypotests', 'scipy.stats.stats', 'scipy.stats.statlib', 'scipy.stats._common', 'scipy.stats._relative_risk', 'scipy.stats._crosstab', 'scipy.stats.contingency', 'scipy.stats.morestats', 'scipy.stats._binomtest', 'scipy.stats._binned_statistic', 'scipy.stats.mvn', 'scipy.stats.kde', 'scipy.stats.mstats_extras', 'scipy.stats.mstats', 'scipy.stats._sobol', 'scipy.stats._qmc_cy', 'scipy.stats._qmc', 'scipy.stats.qmc', 'scipy.stats._multivariate', 'scipy.stats._bootstrap', 'scipy.stats._page_trend_test', 'scipy.stats._mannwhitneyu', 'scipy.stats', 'ctypes.util', 'threadpoolctl', 'sklearn.externals', 'sklearn.externals._packaging', 'sklearn.externals._packaging._structures', 'sklearn.externals._packaging.version', 'sklearn.utils.fixes', 'sklearn.utils._estimator_html_repr', 'sklearn.utils.validation', 'sklearn.utils', 'sklearn.utils._tags', 'sklearn.base', 'sklearn.utils._openmp_helpers', 'sklearn.utils._show_versions', 'sklearn', 'sklearn.utils.multiclass', 'sklearn.utils._logistic_sigmoid', 'sklearn.utils.sparsefuncs_fast', 'sklearn.utils.extmath', 'sklearn.utils.sparsefuncs', 'sklearn.preprocessing._function_transformer', 'sklearn.utils._mask', 'sklearn.utils._encode', 'sklearn.preprocessing._encoders', 'sklearn.preprocessing._data', 'sklearn.preprocessing._label', 'sklearn.preprocessing._discretization', 'sklearn.utils.stats', 'sklearn.preprocessing._csr_polynomial_expansion', 'sklearn.preprocessing._polynomial', 'sklearn.preprocessing', 'sklearn.metrics._base', 'sklearn.metrics._ranking', 'sklearn.metrics._classification', 'sklearn.utils._typedefs', 'sklearn.utils._readonly_array_wrapper', 'sklearn.metrics._dist_metrics', 'sklearn.metrics.cluster._expected_mutual_info_fast', 'sklearn.metrics.cluster._supervised', 'sklearn.metrics._pairwise_fast', 'sklearn.metrics.pairwise', 'sklearn.metrics.cluster._unsupervised', 'sklearn.metrics.cluster._bicluster', 'sklearn.metrics.cluster', 'sklearn._loss', 'sklearn._loss.glm_distribution', 'sklearn.metrics._regression', 'sklearn.metrics._scorer', 'sklearn.metrics._plot', 'sklearn.metrics._plot.base', 'sklearn.metrics._plot.det_curve', 'sklearn.metrics._plot.roc_curve', 'sklearn.metrics._plot.precision_recall_curve', 'sklearn.metrics._plot.confusion_matrix', 'sklearn.metrics', 'sklearn.gaussian_process.kernels', 'sklearn.utils.optimize', 'sklearn.gaussian_process._gpr', 'sklearn.utils.metaestimators', 'sklearn.multiclass', 'sklearn.gaussian_process._gpc', 'sklearn.gaussian_process', 'matplotlib', 'packaging.__about__', 'packaging', 'packaging._structures', 'packaging.version', 'matplotlib._api.deprecation', 'matplotlib._api', 'matplotlib._version', 'matplotlib._c_internal_utils', 'matplotlib.cbook', 'matplotlib.docstring', 'PIL._version', 'PIL', 'PIL.ImageMode', 'PIL.TiffTags', 'PIL._binary', 'PIL._util', 'PIL._imaging', 'cffi.lock', 'cffi.error', 'cffi.model', 'cffi.api', 'cffi', 'PIL.Image', 'PIL.ImageChops', 'PIL.ImageFile', 'PIL.GimpGradientFile', 'PIL.GimpPaletteFile', 'PIL.ImageColor', 'PIL.PaletteFile', 'PIL.ImagePalette', 'PIL.ImageSequence', 'PIL.PngImagePlugin', 'matplotlib._path', 'matplotlib.bezier', 'matplotlib.path', 'matplotlib.transforms', 'matplotlib.ticker', 'matplotlib.scale', 'matplotlib._color_data', 'matplotlib.colors', 'pyparsing.util', 'pyparsing.unicode', 'pyparsing.exceptions', 'pyparsing.actions', 'pyparsing.results', 'pyparsing.core', 'pyparsing.helpers', 'pyparsing.testing', 'pyparsing.common', 'pyparsing', 'matplotlib.fontconfig_pattern', 'matplotlib._enums', 'cycler', 'matplotlib.rcsetup', 'matplotlib.ft2font', 'kiwisolver']
2022-01-22 15:02:40.042 | DEBUG    | matplotlib.font_manager:_load_fontmanager:1431 - CACHEDIR=/home/saifulkhan/.cache/matplotlib
2022-01-22 15:02:40.043 | DEBUG    | matplotlib.font_manager:<module>:1447 - Using fontManager instance from /home/saifulkhan/.cache/matplotlib/fontlist-v330.json
2022-01-22 15:02:40.330 | DEBUG    | matplotlib.pyplot:switch_backend:247 - Loaded backend tkagg version unknown.
2022-01-22 15:02:40.330 | DEBUG    | matplotlib.pyplot:<module>:2230 - Loaded backend TkAgg version unknown.
2022-01-22 15:02:40.464 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - Creating converter from 7 to 5
2022-01-22 15:02:40.464 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - Creating converter from 5 to 7
2022-01-22 15:02:40.465 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - Creating converter from 7 to 5
2022-01-22 15:02:40.465 | DEBUG    | importlib._bootstrap:_call_with_frames_removed:228 - Creating converter from 5 to 7
/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/venv/lib/python3.9/site-packages/apscheduler/util.py:95: PytzUsageWarning: The zone attribute is specific to pytz's interface; please migrate to a new time zone provider. For more details on how to do so, see https://pytz-deprecation-shim.readthedocs.io/en/latest/migration.html
  if obj.zone == 'local':
2022-01-22 15:02:40.795 | INFO     | app.controllers.agents:<module>:64 - Adding job tentatively -- it will be properly scheduled when the scheduler starts
/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/venv/lib/python3.9/site-packages/apscheduler/triggers/cron/__init__.py:146: PytzUsageWarning: The normalize method is no longer necessary, as this time zone supports the fold attribute (PEP 495). For more details on migrating to a PEP 495-compliant implementation, see https://pytz-deprecation-shim.readthedocs.io/en/latest/migration.html
  return self.timezone.normalize(dateval + difference), fieldnum
2022-01-22 15:02:40.796 | INFO     | apscheduler.schedulers.base:start:167 - Added job "run_agents" to job store "default"
2022-01-22 15:02:40.796 | INFO     | apscheduler.schedulers.background:start:35 - Scheduler started
2022-01-22 15:02:40.796 | DEBUG    | apscheduler.schedulers.blocking:_main_loop:32 - Looking for jobs to run
2022-01-22 15:02:40.796 | DEBUG    | apscheduler.schedulers.blocking:_main_loop:32 - Next wakeup is due at 2022-01-23 00:00:00+00:00 (in 32239.203104 seconds)
Download owid ...
/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/venv/lib/python3.9/site-packages/apscheduler/util.py:95: PytzUsageWarning: The zone attribute is specific to pytz's interface; please migrate to a new time zone provider. For more details on how to do so, see https://pytz-deprecation-shim.readthedocs.io/en/latest/migration.html
  if obj.zone == 'local':
2022-01-22 15:02:40.857 | INFO     | app.controllers.process_data_controller:<module>:106 - Adding job tentatively -- it will be properly scheduled when the scheduler starts
2022-01-22 15:02:40.866 | INFO     | app.main:<module>:12 - PROJECT_NAME = rampvis:data-api
2022-01-22 15:02:40.866 | DEBUG    | app.main:<module>:13 - GLOBAL_CONFIG_OBJ = {'allowOriginRegex': '(http://(0\\.0\\.0\\.0|localhost)(:\\d+)?|)', 'mongodb': {'url': 'mongodb://localhost:27017/?directConnection=true', 'db': 'rampvis', 'collection': {'users': 'users', 'thumbnails': 'thumbnails', 'activities': 'activities', 'onto_page': 'onto_page', 'onto_vis': 'onto_vis', 'onto_data': 'onto_data'}}, 'es': {'host': 'http://localhost:9200', 'index': {'onto_page': 'onto_page'}}, 'github': {'clientId': '<set>', 'clientSecret': '<set>', 'callbackUrl': 'http://localhost:4000/api/v1/auth/github-callback', 'successRedirect': 'http://localhost:3000/auth/login', 'failureRedirect': 'http://localhost:3000/error-403'}, 'jwt': {'algorithm': 'RS256', 'pvtKey': 'config/keys/jwtRS256.key', 'pubKey': 'config/keys/jwtRS256.key.pub'}, 'session': {'secret': '<set>'}, 'apiUrl': '/api/v1', 'urlCode': {'API_JS': 'http://localhost:4000/api/v1', 'API_PY': 'http://localhost:4010/stat/v1'}}
INFO:     Started server process [35152]
2022-01-22 15:02:40.871 | INFO     | asyncio.events:_run:80 - Started server process [35152]
INFO:     Waiting for application startup.
2022-01-22 15:02:40.871 | INFO     | uvicorn.server:startup:95 - Waiting for application startup.
INFO:     Application startup complete.
2022-01-22 15:02:40.871 | INFO     | uvicorn.server:startup:95 - Application startup complete.
Download from URLs ...
2022-01-22 15:02:48.790 | DEBUG    | urllib3.connectionpool:_get_conn:281 - Starting new HTTPS connection (1): gist.githubusercontent.com:443
2022-01-22 15:02:49.050 | DEBUG    | urllib3.connectionpool:urlopen:703 - https://gist.githubusercontent.com:443 "GET /rampvisdevelopment/a73ff62e4b648541e5fa75ce0a5edae4/raw/example_sensitivity_input.json HTTP/1.1" 200 33754
2022-01-22 15:02:51.923 | DEBUG    | urllib3.connectionpool:_get_conn:281 - Starting new HTTPS connection (1): gist.githubusercontent.com:443
2022-01-22 15:02:52.127 | DEBUG    | urllib3.connectionpool:urlopen:703 - https://gist.githubusercontent.com:443 "GET /rampvisdevelopment/52a5836735eff0d33692cfd06d049197/raw/uncertainty_inventory.json HTTP/1.1" 200 80
2022-01-22 15:02:52.136 | DEBUG    | urllib3.connectionpool:_get_conn:281 - Starting new HTTPS connection (1): gist.githubusercontent.com:443
2022-01-22 15:02:52.334 | DEBUG    | urllib3.connectionpool:urlopen:703 - https://gist.githubusercontent.com:443 "GET /rampvisdevelopment/acb6a1e6e33d0358553d7de09d6232e0/raw/sensitivity_inventory.json HTTP/1.1" 200 840
Download from URLs has finished
Running Uncertainty Analysis Agents
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-4:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-5:
Traceback (most recent call last):
Converting ents files to sandu SensitivityInput objects.
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self.run()
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
    self.run()
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
Exception in thread Thread-7:
    self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_clustering_agent.py", line 71, in uncertainty_clustering_agent
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self._target(*self._args, **self._kwargs)
    cluster_list = get_cluster_list(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_mean_sample_agent.py", line 34, in uncertainty_mean_sample_agent
    self.run()
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_clustering_agent.py", line 56, in get_cluster_list
    for model in model_list:
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
TypeError: 'NoneType' object is not iterable
    for model in models:
TypeError: 'NoneType' object is not iterable
    self._target(*self._args, **self._kwargs)
Uncertainty Clustering Complete
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/ents_to_sandu_agent.py", line 107, in ents_to_sandu_agent
Running Uncertainty Cluster Analysis
    for model in model_list:
TypeError: 'NoneType' object is not iterable
 SensitivityInput objects created from ents files.
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/uncertainty/uncertainty_inventory.json
Exception in thread Thread-9:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
Running Sensitivity Analysis Agents
    self.run()
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
Exception in thread Thread-10:
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
    self._target(*self._args, **self._kwargs)
Traceback (most recent call last):
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_cluster_mean_sample_agent.py", line 59, in uncertainty_cluster_mean_sample_agent
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
Exception in thread Thread-11:
    list_of_clusters = get_cluster_list(model_list)
    self.run()
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/uncertainty_cluster_mean_sample_agent.py", line 47, in get_cluster_list
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
Traceback (most recent call last):
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_summary_curves_agent.py", line 69, in summary_curves_agent
    for model in models:
    self.run()
TypeError: 'NoneType' object is not iterable
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
    calculate_summary_curves_on_models(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_summary_curves_agent.py", line 56, in calculate_summary_curves_on_models
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_clustering_agent.py", line 122, in sensitivity_clustering_agent
    cluster_list = get_cluster_list(model_list)
    for model in model_list:
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_clustering_agent.py", line 105, in get_cluster_list
TypeError: 'NoneType' object is not iterable
    for model in models:
TypeError: 'NoneType' object is not iterable
Sensitivity Clustering Complete
CANNOT FIND  /home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/app/core/../../../data/live/models/sensitivity/sensitivity_inventory.json
Exception in thread Thread-12:
Traceback (most recent call last):
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 973, in _bootstrap_inner
    self.run()
  File "/home/saifulkhan/anaconda3/lib/python3.9/threading.py", line 910, in run
    self._target(*self._args, **self._kwargs)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_range_mean_sample_agent.py", line 83, in sensitivity_clustering_range_mean_agent
    cluster_list = get_cluster_list(model_list)
  File "/home/saifulkhan/CODE/RAMPVIS/rampvis-api/data-api/./app/controllers/agents/sensitivity_range_mean_sample_agent.py", line 48, in get_cluster_list
    for model in models:
TypeError: 'NoneType' object is not iterable
2022-01-22 15:03:04.747 | INFO     | app.algorithms.sim_search.cube_functions:cube_master:91 - cube_master will take a few minutes...