Small, mostly standalone projects that support the rest of the repository.
- comparison-website — Collects pairwise image preferences through a small FastAPI and Nginx app.
- datasets (OLD) — Scripts for generating and registering fiber, mesh, and volumetric-label datasets.
- kaggle-visualizer — Napari helper for browsing paired 3D TIFF volumes and binary labels.
- obj2nml (OLD) — Converts OBJ meshes into WebKnossos NML skeleton annotations.
- photogrammetry-docs — End-to-end photogrammetry and scroll-case instructions with a pinned PGS-Recon workflow.
- photogrammetry-tools — Scripts for each stage of the photogrammetry instructions: acquisition blocks, then review of masks, SfM, scale, meshes and case kits.
- pgs-recon — Edited fork of EduceLab's wrapper around OpenMVG/OpenMVS reconstruction pipeline with reviewed physical scaling.
- sam2-photogrammetry — SAM 2 fine-tuned to mask scrolls and rulers in photogrammetry images.
- scanning — Small scripts for x-ray and scanning-parameter analysis.
- scroll-unwrap-pipeline — Renders scroll unwrap videos from wrap meshes, with optional ink overlays.
- scrollcase — Creates STL models of scroll cases for 3D printing.
- shift-optimizer — Assigns shifts to people for scan sessions at the synchrotron.
- volume-registration — Tool for finding transforms between fixed and moving Zarr volumes or meshes.