Buffer dtype mismatch #5
Description
I have installed malstroem from your fork on a linux platform, but cannot run the given example successfully. I don't know how C extensions for Python work, so I'm at a loss to debug this. Is there additional information I could provide to help?
$ malstroem complete -r 10 -r 30 -filter "maxdepth > 0.05" -dem dem.tif -outdir out
Processing
dem: dem.tif
outdir: out
rain: 10.0mm, 30.0mm
accum: False
filter: maxdepth > 0.05
Calculating filled DEM
Calculating bluespot depths
Calculating flow directions
Done
Calculating unfiltered bluespots
Number of bluespots found before filtering: 1788
Calculating filtered bluespots
Number of bluespots left after filtering: 1788
Calculating watersheds
Calculating pour points at min filled
Traceback (most recent call last):
File "/research-home/icarroll/.local/bin/malstroem", line 11, in <module>
sys.exit(cli())
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 722, in __call__
return self.main(*args, **kwargs)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 697, in main
rv = self.invoke(ctx)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 1066, in invoke
return _process_result(sub_ctx.command.invoke(sub_ctx))
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 895, in invoke
return ctx.invoke(self.callback, **ctx.params)
File "/usr/local/lib/python3.5/dist-packages/click/core.py", line 535, in invoke
return callback(*args, **kwargs)
File "/research-home/icarroll/.local/lib/python3.5/site-packages/malstroem/scripts/complete.py", line 100, in process_all
bluespot_tool.process()
File "/research-home/icarroll/.local/lib/python3.5/site-packages/malstroem/bluespots.py", line 204, in process
filled_no_flats = fill.fill_terrain_no_flats(dem, short, diag)
File "/research-home/icarroll/.local/lib/python3.5/site-packages/malstroem/algorithms/fill.py", line 209, in fill_terrain_no_flats
if keep_going and _fill_terrain_no_flats(dtm, filled, 1, maxrow, 1, maxcol, short, diag):
File "malstroem/algorithms/speedups/_fill.pyx", line 74, in malstroem.algorithms.speedups._fill._fill_terrain_no_flats
ValueError: Buffer dtype mismatch, expected 'DTYPE_t_DTM' but got 'unsigned short'
Versions
Ubuntu==16.04
Python==3.5.2
numpy==1.16.2
Cython==0.29.6
click-log=0.1.8
GDAL==2.1.3
scipy==1.2.1