Skip to content

README.md

Latest commit

 

History

History
31 lines (23 loc) · 917 Bytes

README.md

File metadata and controls

31 lines (23 loc) · 917 Bytes
Raw

Auspice 2.68.0 container

Main tool: Auspice

Code repository: https://github.com/nextstrain/auspice

Auspice is an open-source interactive web app for visualizing phylogenomic data. It may be used in tandem with nextstrain's bioinformatics toolkit augur or on its own. Auspice may be used to explore datasets locally or run as a server to share results.

Basic information on how to use this tool:

  • Executable: auspice
  • Help: auspice --help
  • Version: auspice --version

Additional information: Full documentation: https://github.com/nextstrain/auspice/tree/master/docs

Example Usage

View datasets from a directory:

auspice view --datasetDir /data

View datasets and narratives:

auspice view --datasetDir /data --narrativeDir /narratives

Run with Docker:

docker run -p 4000:4000 -v $(pwd)/data:/data auspice