[Bug]: plassembler 1.8.2 - canu error

[Kincekara]

What container were you trying to use, and how were you attempting to use it?

Canu fails when using the plassembler long command. The problem doesn't exist in the 1.8.1 container. I have been looking for possible fixes, but I couldn't find one yet.

Relevant log output

-- Starting command on Thu Jun 11 18:51:37 2026 with 561.832 GB free disk space

    cd .
    /opt/conda/bin/sqStoreDumpFASTQ \
      -corrected \
      -S ./canu.seqStore \
      -o ./canu.correctedReads.gz \
      -fasta \
      -nolibname \
    > canu.correctedReads.fasta.err 2>&1

-- Finished on Thu Jun 11 18:51:37 2026 (furiously fast) with 561.832 GB free disk space
----------------------------------------

ERROR:
ERROR:  Failed with exit code 1.  (rc=256)
ERROR:

ABORT:
ABORT: canu master +27 changes (r10515 2a41e933b8de6ed66723d75d36dd071b46d2c347)
ABORT: Don't panic, but a mostly harmless error occurred and Canu stopped.
ABORT: Try restarting.  If that doesn't work, ask for help.
ABORT:
ABORT:   failed to output corrected reads.
ABORT:
ABORT: Disk space available:  561.832 GB
ABORT:
ABORT: Last 50 lines of the relevant log file (./canu.correctedReads.fasta.err):
ABORT:
ABORT:   Opened seqStore './canu.seqStore' for 'corrected' reads.
ABORT:   Dumping corrected reads from 1 to 1627 (inclusive).
ABORT:   ERROR:  Failed to open output file './canu.correctedReads.fasta.gz': Function not implemented
ABORT:
Command line: canu -correct -p canu -d out/canu genomeSize=0.34374m maxInputCoverage=50 stopOnLowCoverage=1 maxThreads=8 useGrid=false -pacbio correctedErrorRate=0.045 out/plasmid_long_entropy_filtered.fastq