ECAA-workflow/config/downstream-policy/interpretation-policy.time_series_forecast.schema.json at main · SuLab/ECAA-workflow · GitHub

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{
  "$schema": "http://json-schema.org/draft-07/schema#",
  "title": "Interpretation Policy (domain overrides)",
  "description": "this sidecar now carries only interpretation-specific overrides: the `verifiableEntities` block consumed by the core claim verifier. The shared claim-boundary shape is validated against `_policy-skeleton.schema.json` by the loader.",
  "type": "object",
  "properties": {
    "verifiableEntities": {
      "type": "object",
      "required": [
        "enabled",
        "entityNamePatterns",
        "directionVocab",
        "effectSizeColumns",
        "entityColumns"
      ],
      "properties": {
        "enabled": { "type": "boolean" },
        "entityNamePatterns": {
          "type": "array",
          "items": { "type": "string" },
          "description": "Regular expressions identifying entity names in narrative prose (e.g. gene symbols, protein IDs, endpoint codes)."
        },
        "entityNameExcludePatterns": {
          "type": "array",
          "items": { "type": "string" },
          "description": "Anchored regex patterns (e.g. '^DNA$') for tokens that must be excluded after entity-pattern matching. Used to suppress common-noun acronyms (RNA, PCR, DNA, WHO) that the broad gene-symbol regex otherwise captures. Optional — absent field treated as empty denylist."
        },
        "directionVocab": {
          "type": "object",
          "required": ["up", "down"],
          "properties": {
            "up": { "type": "array", "items": { "type": "string" } },
            "down": { "type": "array", "items": { "type": "string" } }
          }
        },
        "effectSizeColumns": {
          "type": "array",
          "items": { "type": "string" },
          "description": "Column headers where effect sizes appear in result tables; the verifier tries each in order."
        },
        "entityColumns": {
          "type": "array",
          "items": { "type": "string" },
          "description": "Column headers where entity names appear; used to locate the row for a given claim."
        },
        "pvalueColumns": {
          "type": "array",
          "items": { "type": "string" }
        },
        "tolerance": {
          "type": "object",
          "properties": {
            "log2FcAbsoluteDelta": { "type": "number" },
            "pvalueRelativeDelta": { "type": "number" }
          }
        }
      }
    }
  }
}