nir-ftir/.gitignore at main · SuperMBA/nir-ftir · GitHub

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# =========================
# OS / IDE / Python cache
# =========================
.DS_Store
.vscode/
.idea/
__pycache__/
*.py[cod]
*.pyo
.ipynb_checkpoints/

# =========================
# Environments / local system
# =========================
.env
.venv/
venv/
.micromamba/
.conda/
mlflow.db
mlruns/

# =========================
# Local aggregated artifacts
# =========================
summary_runs_from_json.csv

# =========================
# Data
# =========================

# Raw and interim data are local only
data/raw/
data/interim/
data/.DS_Store

# Keep selected processed parquet datasets in the repo
data/processed/*
!data/processed/
!data/processed/train.parquet
!data/processed/external.parquet
!data/processed/diabetes_saliva.parquet

# GDB small-n is local only and is not versioned
data/processed/gdb_smalln.parquet

# =========================
# Reports
# =========================

# Ignore everything in reports by default
reports/*
!reports/
!reports/.gitkeep

# Keep compact summary files that are useful for the thesis / repo
!reports/meta_only_diabetes_holdout.csv

# ---- exp ----
!reports/exp/
reports/exp/*
!reports/exp/summary.csv

# ---- pca_r2 ----
!reports/pca_r2/
reports/pca_r2/*
!reports/pca_r2/dimdesc_r2_summary.csv
!reports/pca_r2/dimdesc_r2_best_pc_per_factor.csv

# ---- clustering ----
!reports/clustering/
reports/clustering/*
!reports/clustering/clustering_metrics_stability.csv
!reports/clustering/clustering_top5_per_method.csv

# ---- qc_r2 ----
!reports/qc_r2/
reports/qc_r2/*
!reports/qc_r2/summary_method.csv
!reports/qc_r2/summary_label_method.csv


# ---- final results for thesis / commission ----
!reports/final/
reports/final/*
!reports/final/README_results.md
!reports/final/*.csv
!reports/final/*.md

# ---- figs ----
# Keep only final thesis-ready figures, not all generated plots
!reports/figs/
reports/figs/*
!reports/figs/*.png
!reports/figs/*.pdf

# ---- eda_qc ----
# EDA/QC run folders are generated locally and are not versioned
reports/eda_qc/

# =========================
# Archives / logs / misc
# =========================
*.log
*.rar
*.zip
EOF
.pytest_cache/
# PCA/R2 run-level intermediate outputs
reports/final/pca_r2/gdb_*_nomix_seed*/