Merge branch 'main' into temp2

Author: shiltemann

.devcontainer/README.md

@@ -0,0 +1 @@
+Devcontainer metadata reference: https://containers.dev/implementors/json_reference://containers.dev/implementors/json_reference/

.devcontainer/devcontainer.json

@@ -0,0 +1,28 @@
+{
+"forwardPorts": [4000],
+
+"portsAttributes": {
+  "4000": {
+    "label": "GTN preview",
+    "onAutoForward": "openPreview"
+  }
+},
+
+"onCreateCommand": "rm -rf /workspaces/.codespaces/shared/editors/jetbrains",
+
+"hostRequirements": {
+  "cpus": 4,
+  "memory": "16gb",
+  "storage": "32gb"
+},
+
+"customizations": {
+  "codespaces": {
+    "openFiles": [
+      ".devcontainer/welcome-message.txt"
+    ]
+  }
+}
+
+
+}

.devcontainer/welcome-message.txt

@@ -0,0 +1,11 @@
+👋 Welcome to GTN in CodeSpaces!
+
+🗃️ On the left, you see all the files in the GTN. Tutorials can be found inside
+the topics folder.
+
+🔍 To get a preview of the GTN website, run "make preview" (without the quotes)
+in the terminal (bottom panel of your screen)
+
+📝 For more information about using this environment, see our GTN tutorial:
+https://training.galaxyproject.org/topics/contributing/tutorials/running-codespaces/tutorial.html
+

.github/workflows/ci-main.yml

@@ -28,6 +28,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 1
+          persist-credentials: false
 
       - uses: reviewdog/action-setup@v1
         with:

.github/workflows/ci.yml

@@ -17,6 +17,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 1
+          persist-credentials: false
 
       # BEGIN Dependencies
       - uses: actions/setup-python@v5

.github/workflows/cron-commit-cache.yml

@@ -1,11 +1,14 @@
-name: "[Cron] Update Commit Cache"
+name: "[Cron] Update Commit Cache, PR Data"
 on:
   workflow_dispatch:
   schedule:
     - cron: '45 0 * * 1'
 jobs:
   runner-job:
     runs-on: ubuntu-latest
+    permissions:
+      contents: write
+      pull-requests: write
     # Only run on main repo on and PRs that match the main repo.
     if: |
       github.repository == 'galaxyproject/training-material' &&
@@ -15,6 +18,7 @@ jobs:
       - uses: actions/checkout@v4
         with:
           fetch-depth: 1000
+          persist-credentials: false
 
       # BEGIN Dependencies
       - uses: ruby/setup-ruby@v1
@@ -54,9 +58,16 @@ jobs:
         run: |
           bundle exec ruby bin/geocode.rb
 
+      - name: Update github metadata dataset
+        id: ghmeta
+        run: |
+          bundle exec ruby bin/collect-gh.rb
+        env:
+          GH_TOKEN: ${{ github.token }}
+
       - name: Create Pull Request
         # If it's not a Pull Request then commit any changes as a new PR.
-        uses: peter-evans/create-pull-request@v3
+        uses: peter-evans/create-pull-request@v7
         with:
           title: Update Cached Commit Data
           branch-suffix: timestamp

.github/workflows/deploy.yml

@@ -28,6 +28,7 @@ jobs:
           #  3rd Qu.: 94.0
           #  Max.   :282.0
           fetch-depth: 400
+          persist-credentials: false
 
       # BEGIN Dependencies
       - uses: actions/setup-python@v5