updated Readme

Author: Yves Ulrich Tittes

.gitignore

@@ -0,0 +1,2 @@
+
+dist/

.goreleaser.yaml

@@ -0,0 +1,46 @@
+# This is an example .goreleaser.yml file with some sensible defaults.
+# Make sure to check the documentation at https://goreleaser.com
+
+# The lines below are called `modelines`. See `:help modeline`
+# Feel free to remove those if you don't want/need to use them.
+# yaml-language-server: $schema=https://goreleaser.com/static/schema.json
+# vim: set ts=2 sw=2 tw=0 fo=cnqoj
+
+version: 2
+
+before:
+  hooks:
+    # You may remove this if you don't use go modules.
+    - go mod tidy
+    # you may remove this if you don't need go generate
+    - go generate ./...
+
+builds:
+  - env:
+      - CGO_ENABLED=0
+    goos:
+      - linux
+      - windows
+      - darwin
+
+archives:
+  - format: tar.gz
+    # this name template makes the OS and Arch compatible with the results of `uname`.
+    name_template: >-
+      {{ .ProjectName }}_
+      {{- title .Os }}_
+      {{- if eq .Arch "amd64" }}x86_64
+      {{- else if eq .Arch "386" }}i386
+      {{- else }}{{ .Arch }}{{ end }}
+      {{- if .Arm }}v{{ .Arm }}{{ end }}
+    # use zip for windows archives
+    format_overrides:
+      - goos: windows
+        format: zip
+
+changelog:
+  sort: asc
+  filters:
+    exclude:
+      - "^docs:"
+      - "^test:"

README.md

@@ -12,7 +12,10 @@ Small tool to move some of the data and the metadata that EPU usually keeps on t
 * Atlas Mountpoint(Optional): Depending on your setup these might be on a different system or not, so it really depends - in the setup this was written for they have their own partition.
 
 ## Flags:
-* --i wants your EPU folder
-* --o should point to your data folder (where full datasets are output to)
-* --a Optional, if you want an Atlas and have it on a different directory.
+* --i point to your EPU folder on the microscope computer
+* --o point to your dataset folder (where full datasets are output to) TFS typical: "OffloadData". This one is usually NOT on the microscope computer
+* --a Optional, point to atlas folder if you want the overview atlas with your data. Sometimes these can also be in the EPU folder - in that case point it there. The flag is required to be set if you want the atlas.
+
+## Where and how o deploy
+Depending on your setup and the mountpoints you can run this on a (linux) machine that has access to both the datasets and the EPU folders (and the atlas one if you want those). Alternatively it is Windows compatible so you can directly run it on the mircoscope computer. We recommend using task scheduler, systemd or similar to automatize it in the background. Running every 15-20 minutes has worked well in our experience (even with a lot of datasets runtime of the merger should be <5 min). 
 

main.go

@@ -304,7 +304,7 @@ func getAtlas(yPath string, atlas string, xPath string) error {
 			switch runtime.GOOS {
 			case "windows":
 				fullpath = value
-			// if os not windows change the Windows path to a linux one (if required) and change drive D:\ start to mountpoint *aFlag
+			// if os not windows change the Windows path to a linux compatible one and change drive to mountpoint *aFlag
 			default:
 				atlasdm := strings.ReplaceAll(value, `\`, string(filepath.Separator))
 				if len(atlasdm) > 1 && atlasdm[1] == ':' {