Importing 2 of the same component in registries other than SynBioHub results in an error when exporting

[Drock54651]

• If you have 2 promoters and you try to import the same component for both of them from Charmme, this will result in an error when exporting due to the identities not being unique
• This is only a problem for registries different from SynBioHub

Stack Trace:
org.sbolstandard.core2.SBOLValidationException: sbol-10202: Weak Validation Error:
The identity property of an Identified object MUST be globally unique.
Reference: SBOL Version 2.3.0 Section 7.4 on page 17
at org.sbolstandard.core2.SBOLDocument.addTopLevel(SBOLDocument.java:4810)
at org.sbolstandard.core2.SBOLDocument.addComponentDefinition(SBOLDocument.java:1481)
at org.sbolstandard.core2.SBOLDocument.createComponentDefinition(SBOLDocument.java:1436)
at org.sbolstandard.core2.SBOLDocument.createComponentDefinition(SBOLDocument.java:1467)
at utils.MxToSBOL.createComponentDefinition(MxToSBOL.java:405)
at utils.MxToSBOL.setupDocument(MxToSBOL.java:181)
at utils.MxToSBOL.toSBOL(MxToSBOL.java:86)
at servlets.Convert.doPost(Convert.java:58)

[cjmyers]

I think the problem is in MxToSBOL.java:388

	// if the uri is one of the synbiohub ones, skip the object
	for (String registry : SBOLData.registries) {
		if (glyphInfo.getUriPrefix().contains(registry)) {
			// if we're not logged in, it still needs to be added to the document
			if (document.getRegistry(registry) == null) {
				document.addRegistry(registry);
			}
			if (userTokens.containsKey(registry) || glyphInfo.getUriPrefix().contains("/public/")) {
				return;
			}
		}
	}

This should cause it to exit and not create the CD. My guess is the added SBHs are not in the list being checked here or not checked correctly.

[Drock54651]

Yeah, I also thought this was the problem and hardcoded Charmme into the registries just to test, and that did indeed fix it. Right now the registries are pulled from the Web of Registries which, as of now, only includes SBH. @Gonza10V and I were trying to figure out if there was a better alternative as it wouldn't be ideal to add private SBH instances to the Web of Registries.

[cjmyers]

you should add the registries that the user adds manually to the list when importing components.

I'm also wondering if URIs created by SBOL canvas always have same uri prefix. if so, we could reverse the check and only create CDs for the ones created by canvas