Added draft of code chapter

Author: t-emery

_quarto.yml

@@ -20,8 +20,8 @@ book:
         - apps_prompting.qmd          # Chapter 2.1
         - apps_gems.qmd               # Chapter 2.2
         - apps_lit_review.qmd         # Chapter 2.3
-    #     - apps_coding.qmd             # Chapter 2.5
         - apps_other_tools.qmd        # Chapter 2.6
+        - apps_coding.qmd             # Chapter 2.5
     # 
     # - part: "Advanced Possibilities"
     #   chapters:

apps_coding.qmd

@@ -207,6 +207,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>

docs/AI-for-the-Skeptical-Scholar--Practical-Strategies-for-Using-LLMs-in-Research.pdf

@@ -207,6 +207,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>

docs/apps_coding.html

@@ -30,6 +30,7 @@
 <script src="site_libs/quarto-search/fuse.min.js"></script>
 <script src="site_libs/quarto-search/quarto-search.js"></script>
 <meta name="quarto:offset" content="./">
+<link href="./apps_coding.html" rel="next">
 <link href="./apps_lit_review.html" rel="prev">
 <script src="site_libs/quarto-html/quarto.js"></script>
 <script src="site_libs/quarto-html/popper.min.js"></script>
@@ -172,6 +173,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link active">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>
@@ -1020,6 +1027,9 @@ <h2 data-number="7.8" class="anchored" data-anchor-id="the-research-frontier"><s
       </a>          
   </div>
   <div class="nav-page nav-page-next">
+      <a href="./apps_coding.html" class="pagination-link" aria-label="Coding Assistance: Benefits, Pitfalls, and Best Practices">
+        <span class="nav-page-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span> <i class="bi bi-arrow-right-short"></i>
+      </a>
   </div>
 </nav>
 </div> <!-- /content -->

docs/apps_gems.html

@@ -207,6 +207,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>

docs/apps_lit_review.html

@@ -173,6 +173,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>

docs/apps_other_tools.html

@@ -173,6 +173,12 @@
   <a href="./apps_other_tools.html" class="sidebar-item-text sidebar-link">
  <span class="menu-text"><span class="chapter-number">7</span>&nbsp; <span class="chapter-title">Advanced Tools: NotebookLM and Deep Research</span></span></a>
   </div>
+</li>
+          <li class="sidebar-item">
+  <div class="sidebar-item-container"> 
+  <a href="./apps_coding.html" class="sidebar-item-text sidebar-link">
+ <span class="menu-text"><span class="chapter-number">8</span>&nbsp; <span class="chapter-title">Coding Assistance: Benefits, Pitfalls, and Best Practices</span></span></a>
+  </div>
 </li>
       </ul>
   </li>