Skip to content

Rules for score_type #57

@TessaNM

Description

@TessaNM

Geneset scores don't always match the score type (e.g. values != 1 or 0 for "Binary" scores), indicating that users may accidentally be choosing the wrong score types- this can affect what genesets are returned in searches and are visible to be included for analyses. It also affects how the genesets are thresholded, since, for example, "Effect" has a different default threshold rule than "P-Value". Please see GS407897 for an example of mismatched score_types.

I am suggesting there be rules or checks for the various score types (e.g. "P-value" must be a positive number between 0 and 1, "Binary" must be 0 or 1, etc.). If the values don't match the rules for the score type, the user is notified and can correct the score type.

Metadata

Metadata

Assignees

No one assigned

    Labels

    ScoresdocumentationImprovements or additions to documentationenhancementNew feature or request

    Type

    No type

    Projects

    No projects

    Milestone

    No milestone

    Relationships

    None yet

    Development

    No branches or pull requests

    Issue actions