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10X genomics scATAC-seq Library Construction

Main step I: barcoding

Chromium Next GEM Single Cell ATAC Reagent Kits v1.1, 10X genomics, users guide.

This step synthesizes top single strands.


Notes: scATAC-seq sequencing constructs don't have UMI sequence because it's a DNA sequencing methods, not like RNA sequencing that contain many RNA transcripts to differentiate.


Main step II: library construction

P7 and a sample index are added during library construction via PCR. The final libraries contain the P5 and P7 sequences used in Illumina® bridge amplification.

Main step III: sequencing

Overview and oligo sequences