@@ -37,11 +37,12 @@ def plot_volume(
3737 output_path = None ,
3838 show = True ,
3939 xlabels = True ,
40- percentiles = (0.5 , 99.5 ),
40+ percentiles : tuple [ float , float ] = (0.5 , 99.5 ),
4141 figsize = None ,
4242 title = None ,
4343 reorient = True ,
4444 indices = None ,
45+ ** imshow_kwargs ,
4546):
4647 _ , plt = import_mpl_plt ()
4748 fig = None
@@ -58,44 +59,44 @@ def plot_volume(
5859 slice_x = rotate (data [i , :, :], radiological = radiological )
5960 slice_y = rotate (data [:, j , :], radiological = radiological )
6061 slice_z = rotate (data [:, :, k ], radiological = radiological )
61- kwargs = {}
6262 is_label = isinstance (image , LabelMap )
6363 if isinstance (cmap , dict ):
6464 slices = slice_x , slice_y , slice_z
6565 slice_x , slice_y , slice_z = color_labels (slices , cmap )
6666 else :
6767 if cmap is None :
6868 cmap = 'cubehelix' if is_label else 'gray'
69- kwargs ['cmap' ] = cmap
69+ imshow_kwargs ['cmap' ] = cmap
70+
7071 if is_label :
71- kwargs ['interpolation' ] = 'none'
72+ imshow_kwargs ['interpolation' ] = 'none'
7273
7374 sr , sa , ss = image .spacing
74- kwargs ['origin' ] = 'lower'
75+ imshow_kwargs ['origin' ] = 'lower'
7576
7677 if percentiles is not None and not is_label :
7778 p1 , p2 = np .percentile (data , percentiles )
78- kwargs ['vmin' ] = p1
79- kwargs ['vmax' ] = p2
79+ imshow_kwargs ['vmin' ] = p1
80+ imshow_kwargs ['vmax' ] = p2
8081
8182 sag_aspect = ss / sa
82- sag_axis .imshow (slice_x , aspect = sag_aspect , ** kwargs )
83+ sag_axis .imshow (slice_x , aspect = sag_aspect , ** imshow_kwargs )
8384 if xlabels :
8485 sag_axis .set_xlabel ('A' )
8586 sag_axis .set_ylabel ('S' )
8687 sag_axis .invert_xaxis ()
8788 sag_axis .set_title ('Sagittal' )
8889
8990 cor_aspect = ss / sr
90- cor_axis .imshow (slice_y , aspect = cor_aspect , ** kwargs )
91+ cor_axis .imshow (slice_y , aspect = cor_aspect , ** imshow_kwargs )
9192 if xlabels :
9293 cor_axis .set_xlabel ('R' )
9394 cor_axis .set_ylabel ('S' )
9495 cor_axis .invert_xaxis ()
9596 cor_axis .set_title ('Coronal' )
9697
9798 axi_aspect = sa / sr
98- axi_axis .imshow (slice_z , aspect = axi_aspect , ** kwargs )
99+ axi_axis .imshow (slice_z , aspect = axi_aspect , ** imshow_kwargs )
99100 if xlabels :
100101 axi_axis .set_xlabel ('R' )
101102 axi_axis .set_ylabel ('A' )
@@ -120,7 +121,7 @@ def plot_subject(
120121 output_path = None ,
121122 figsize = None ,
122123 clear_axes = True ,
123- ** kwargs ,
124+ ** plot_volume_kwargs ,
124125):
125126 _ , plt = import_mpl_plt ()
126127 num_images = len (subject )
@@ -152,7 +153,7 @@ def plot_subject(
152153 show = False ,
153154 cmap = cmap ,
154155 xlabels = last_row ,
155- ** kwargs ,
156+ ** plot_volume_kwargs ,
156157 )
157158 for axis , axis_name in zip (image_axes , axes_names ):
158159 axis .set_title (f'{ name } ({ axis_name } )' )
0 commit comments