Add CT-RATE dataset (#1278)

Author: fepegar

docs/source/datasets.rst

@@ -18,6 +18,16 @@ GitHub repository:
    <a class="github-button" href="https://github.com/TorchIO-project/torchio/discussions" data-icon="octicon-comment-discussion" aria-label="Discuss TorchIO-project/torchio on GitHub">Discuss</a>
    <script async defer src="https://buttons.github.io/buttons.js"></script>
 
+CT-RATE
+-------
+
+.. currentmodule:: torchio.datasets.ct_rate
+
+:class:`CtRate`
+~~~~~~~~~~~~~~~~
+
+.. autoclass:: CtRate
+    :members:
 
 IXI
 ---

pyproject.toml

@@ -6,13 +6,9 @@ build-backend = "hatchling.build"
 name = "torchio"
 version = "0.20.13"
 description = "Tools for medical image processing with PyTorch"
-readme = {file = "README.md", content-type = "text/markdown"}
-authors = [
-    {name = "TorchIO contributors"}
-]
-maintainers = [
-    {name = "Fernando Perez-Garcia", email = "fepegar@gmail.com"}
-]
+readme = { file = "README.md", content-type = "text/markdown" }
+authors = [{ name = "TorchIO contributors" }]
+maintainers = [{ name = "Fernando Perez-Garcia", email = "fepegar@gmail.com" }]
 classifiers = [
     "Development Status :: 4 - Beta",
     "Environment :: Console",
@@ -32,7 +28,7 @@ classifiers = [
     "Topic :: Scientific/Engineering :: Artificial Intelligence",
     "Topic :: Scientific/Engineering :: Image Processing",
     "Topic :: Scientific/Engineering :: Medical Science Apps.",
-    "Typing :: Typed"
+    "Typing :: Typed",
 ]
 keywords = ["medical", "image processing", "pytorch", "augmentation", "mri"]
 requires-python = ">=3.9"
@@ -52,12 +48,8 @@ dependencies = [
 ]
 
 [project.optional-dependencies]
-csv = [
-    "pandas>=1",
-]
-plot = [
-    "matplotlib>=3.4",
-]
+csv = ["pandas>=1"]
+plot = ["matplotlib>=3.4"]
 
 [project.scripts]
 tiohd = "torchio.cli.print_info:app"
@@ -91,19 +83,13 @@ doc = [
     "sphinx-gallery==0.18.0",
     "sphinxext-opengraph==0.9.1",
 ]
-maintain = [
-    "bump-my-version==0.30.1",
-]
-quality = [
-    "ruff==0.9.4",
-]
+maintain = ["bump-my-version==0.30.1"]
+quality = ["ruff==0.9.4"]
 types = [
-    "mypy>=1.14.1",
-    "pandas-stubs>=2.2.2.240807",
+    "mypy==1.14.1",
+    "pandas-stubs==2.2.2.240807",
     "pillow==11.0.0",
-    "pip>=25.0.1",
-    "types-deprecated==1.2.15.20241117",
-    "types-tqdm>=4.67.0.20250301",
+    "pip==25.0.1",
 ]
 test = [
     "coverage==7.6.10",
@@ -137,6 +123,10 @@ pretty = true
 module = "duecredit.*"
 ignore_missing_imports = true
 
+[[tool.mypy.overrides]]
+module = "huggingface_hub.*"
+ignore_missing_imports = true
+
 [[tool.mypy.overrides]]
 module = "matplotlib.*"
 ignore_missing_imports = true
@@ -151,8 +141,8 @@ ignore_missing_imports = true
 
 [tool.pytest.ini_options]
 markers = [
-  "slow: marks tests as slow (deselect with '-m \"not slow\"')",
-  "serial",
+    "slow: marks tests as slow (deselect with '-m \"not slow\"')",
+    "serial",
 ]
 filterwarnings = [
     # Ignore SimpleITK Swig warnings
@@ -167,23 +157,11 @@ quote-style = 'single'
 
 [tool.ruff.lint]
 preview = true
-select = [
-    "B",
-    "E",
-    "F",
-    "I",
-    "W",
-]
-ignore = [
-    "E203",
-    "E501",
-    "N813",
-]
+select = ["B", "E", "F", "I", "W"]
+ignore = ["E203", "E501", "N813"]
 
 [tool.ruff.lint.isort]
 force-single-line = true
 
 [tool.coverage.run]
-omit = [
-    "**/_remote_module_non_scriptable.py",
-]
+omit = ["**/_remote_module_non_scriptable.py"]

src/torchio/datasets/__init__.py

@@ -1,4 +1,5 @@
 from .bite import BITE3
+from .ct_rate import CtRate
 from .episurg import EPISURG
 from .fpg import FPG
 from .itk_snap import T1T2
@@ -24,6 +25,7 @@
     'FPG',
     'Slicer',
     'BITE3',
+    'CtRate',
     'IXI',
     'IXITiny',
     'RSNAMICCAI',