Add site build OHDSI#445

Author: jshoughtaling

.github/workflows/build-rmarkdown-site.yml

@@ -0,0 +1,83 @@
+name: Build and Deploy Website
+
+on:
+  push:
+    branches:
+      - main
+    paths:
+      - 'rmd/**'
+      - 'build-site.R'
+      - '.github/workflows/build-site.yml'
+  pull_request:
+    branches:
+      - main
+    paths:
+      - 'rmd/**'
+      - 'build-site.R'
+  workflow_dispatch:
+
+jobs:
+  build:
+    runs-on: ubuntu-latest
+
+    steps:
+    - name: Checkout repository
+      uses: actions/checkout@v3
+
+    - name: Setup R
+      uses: r-lib/actions/setup-r@v2
+      with:
+        r-version: '4.3.0'
+        use-public-rspm: true
+
+    - name: Cache apt packages
+      uses: actions/cache@v3
+      with:
+        path: /var/cache/apt/archives
+        key: ${{ runner.os }}-apt-${{ hashFiles('.github/workflows/build-site.yml') }}
+        restore-keys: |
+          ${{ runner.os }}-apt-
+
+    - name: Install system dependencies
+      run: |
+        sudo apt-get update
+        sudo apt-get install -y \
+          libcurl4-openssl-dev \
+          libssl-dev \
+          libxml2-dev \
+          pandoc
+
+    - name: Cache R packages
+      uses: actions/cache@v3
+      with:
+        path: ${{ env.R_LIBS_USER }}
+        key: ${{ runner.os }}-r-${{ hashFiles('**/DESCRIPTION') }}-${{ hashFiles('.github/workflows/build-site.yml') }}
+        restore-keys: |
+          ${{ runner.os }}-r-
+
+    - name: Install R packages
+      run: |
+        Rscript -e 'install.packages("rmarkdown", repos="https://cloud.r-project.org")'
+
+    - name: Cache Pandoc
+      uses: actions/cache@v3
+      with:
+        path: ~/.cache/pandoc
+        key: ${{ runner.os }}-pandoc-${{ hashFiles('rmd/**') }}
+        restore-keys: |
+          ${{ runner.os }}-pandoc-
+
+    - name: Build site
+      run: |
+        Rscript build-site.R
+
+    - name: Create .nojekyll file
+      run: touch docs/.nojekyll
+
+    - name: Commit and push if changes
+      if: github.event_name == 'push' && github.ref == 'refs/heads/main'
+      run: |
+        git config --local user.email "action@github.com"
+        git config --local user.name "GitHub Action"
+        git add docs/
+        git diff --quiet && git diff --staged --quiet || (git commit -m "Auto-build website [skip ci]" && git push)

.github/workflows/build-site.yml

@@ -0,0 +1,48 @@
+# Simple workflow for deploying static content to GitHub Pages
+name: Deploy static content to Pages
+
+on:
+  # Runs after the build-site workflow completes successfully
+  workflow_run:
+    workflows: ["Build and Deploy Website"]
+    types:
+      - completed
+    branches: ["main"]
+
+  # Allows you to run this workflow manually from the Actions tab
+  workflow_dispatch:
+
+# Sets permissions of the GITHUB_TOKEN to allow deployment to GitHub Pages
+permissions:
+  contents: read
+  pages: write
+  id-token: write
+
+# Allow only one concurrent deployment, skipping runs queued between the run in-progress and latest queued.
+# However, do NOT cancel in-progress runs as we want to allow these production deployments to complete.
+concurrency:
+  group: "pages"
+  cancel-in-progress: false
+
+jobs:
+  # Single deploy job since we're just deploying
+  deploy:
+    # Only run if the build workflow succeeded
+    if: ${{ github.event.workflow_run.conclusion == 'success' || github.event_name == 'workflow_dispatch' }}
+    environment:
+      name: github-pages
+      url: ${{ steps.deployment.outputs.page_url }}
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v4
+      - name: Setup Pages
+        uses: actions/configure-pages@v5
+      - name: Upload artifact
+        uses: actions/upload-pages-artifact@v3
+        with:
+          # Upload docs folder (generated HTML)
+          path: 'docs'
+      - name: Deploy to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4