R-CMD-check.yaml

Revert to est_seroincidence_by() #2126

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Job	Run time
macos-latest (release)	3m 23s
ubuntu-latest (oldrel-1)	6m 12s
ubuntu-latest (devel)	32m 5s
ubuntu-latest (release)	3m 12s
windows-latest (release)	5m 16s
	50m 8s