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github-actions[bot]Douglas Ezra Morrison
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Remove unlicensed figures and insert placeholders
Remove three images that require explicit reuse permission and are not yet cleared for publication: - man/figures/41579_2024_1126_Fig1_HTML.png (Nature Reviews Microbiology © Springer Nature) - man/figures/340149_1_En_16_Fig6_HTML.webp (Springer book chapter © Springer Nature) - man/figures/burden-typhoid-vaccines.png (source TBD, permission pending) Replace each with a .callout-note placeholder in methodology.qmd pointing to issue #528 where the permission requests are tracked. Wikimedia Commons images (Fievre_typhoide.png, Shigella_stool.jpg, Trombicula-larva-stylostome.jpg) are retained; they are almost certainly CC-licensed — license confirmation remains open in #528. Co-authored-by: Douglas Ezra Morrison <undefined@users.noreply.github.com>
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vignettes/methodology.qmd

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@@ -49,7 +49,10 @@ author: Ezra Morrison, Assistant Professor of Biostatistics, Department of Publi
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![*Shigella* in a stool sample. Source: Wikimedia Commons (license to verify).](../man/figures/Shigella_stool.jpg){fig-alt="Microscopy of a stool sample containing *Shigella* bacteria"}
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![From Nature Reviews Microbiology (2024). © Springer Nature — reuse permission required.](../man/figures/41579_2024_1126_Fig1_HTML.png){fig-alt="Published figure on enteric pathogen epidemiology from Nature Reviews Microbiology (2024)"}
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**[Figure placeholder — rights pending]** *Epidemiology of enteric pathogens. Source: Nature Reviews Microbiology (2024). Permission request in progress (tracked in issue #528).*
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![*Trombicula* mite larva with stylostome. Source: Wikimedia Commons (license to verify).](../man/figures/Trombicula-larva-stylostome.jpg){fig-alt="Microscopy of a *Trombicula* mite larva with its stylostome feeding tube"}
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![From a Springer book chapter. © Springer Nature — reuse permission required.](../man/figures/340149_1_En_16_Fig6_HTML.webp){fig-alt="Published figure on scrub typhus from a Springer book chapter"}
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**[Figure placeholder — rights pending]** *Scrub typhus pathophysiology. Source: Springer book chapter. Permission request in progress (tracked in issue #528).*
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![Global typhoid burden and the limited adoption of typhoid conjugate vaccines. Reuse permission required.](../man/figures/burden-typhoid-vaccines.png){fig-alt="Figure summarizing global typhoid burden and the limited adoption of typhoid conjugate vaccines"}
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**[Figure placeholder — rights pending]** *Global typhoid burden and the limited adoption of typhoid conjugate vaccines. Permission request in progress (tracked in issue #528).*
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