Fix Markdown

richelbilderbeek · richelbilderbeek · commit 2b1a8a645efa · 2026-04-26T17:34:46.000+02:00
diff --git a/README.md b/README.md
@@ -25,4 +25,3 @@ Filename                                    |Description
 [`.markdownlintignore`](.markdownlintignore)|Files ignored by the Markdown linter, use [`./scripts/fix_markdown_style_errors.sh`](scripts/fix_markdown_style_errors.sh) to do markdown linting locally
 
 <!-- markdownlint-enable MD013 -->
-
diff --git a/docs/communication/20251014/welcome_email.md b/docs/communication/20251014/welcome_email.md
@@ -38,10 +38,8 @@ Please make sure you've done all your prerequisites and if yes, see you on Octob
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
-
 ## Welcome to the 'Intro to Python for HPC' course of 2025-10-14 last steps (course project)
 
 Dear learners,
@@ -76,7 +74,6 @@ Please make sure you've done all your prerequisites and if yes, see you on Octob
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
 ## Welcome to the 'Intro to Python for HPC' course of 2025-10-14 last steps (own project)
@@ -110,7 +107,6 @@ Please make sure you've done all your prerequisites and if yes, see you on Octob
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
 ## 2025-10-13 step 2
diff --git a/docs/communication/20260303/README.md b/docs/communication/20260303/README.md
@@ -1,6 +1,5 @@
 # Communication
 
-
 - Course date: 2026-03-03
 
 ## Workflow
diff --git a/docs/communication/20260303/registration_form.md b/docs/communication/20260303/registration_form.md
@@ -24,4 +24,3 @@ Registration closes at around 2026-02-24 23:59.
 ## If you work on your own HPC cluster, what is its name?
 
 - `[open question]`
-
diff --git a/docs/communication/20260303/reminder_in_morning.md b/docs/communication/20260303/reminder_in_morning.md
@@ -44,7 +44,6 @@ If you have any questions, I will be in the Zoom room earlier :-)
 
 See you at 13:00 (sharp!) in the Zoom room below!
 
-
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
 `[Zoom invite text]`
diff --git a/docs/communication/20260303/welcome_email.md b/docs/communication/20260303/welcome_email.md
@@ -33,10 +33,8 @@ Please make sure you've done all your prerequisites and if yes, see you on March
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
-
 ## `[Email 3a]` Welcome to the 'Intro to Python for HPC' course of 2026-03-03 last steps (course project)
 
 Dear learners,
@@ -73,7 +71,6 @@ Please make sure you've done all your prerequisites and if yes, see you on March
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
 ## `[Email 3b]` Welcome to the 'Intro to Python for HPC' course of 2026-03-03 last steps (own project)
@@ -109,10 +106,8 @@ Please make sure you've done all your prerequisites and if yes, see you on March
 
 Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teacher
 
-
 `[Zoom invite text]`
 
-
 ## `[Email 3c]` Welcome to the 'Intro to Python for HPC' course of 2026-03-03 last steps (no HPC)
 
 Dear learners,
@@ -141,7 +136,6 @@ Thanks and cheers, Richèl Bilderbeek, NAISS 'Intro to Python for HPC' main teac
 
 `[Zoom invite text]`
 
-
 ## Reminder email: no SUPR account
 
 Dear learners,
diff --git a/docs/data/20250304/README.md b/docs/data/20250304/README.md
@@ -7,22 +7,21 @@ Here are the registrations we've received,
 with an MD5 of the email address.
 
 - Data: [registrations.csv](registrations.csv)
-    - `timestamp`: the timestamp in `DD/MM/YYYY hh:mm:ss`
+  - `timestamp`: the timestamp in `DD/MM/YYYY hh:mm:ss`
       format
-    - `email`: the MD5 hash of the email address
+  - `email`: the MD5 hash of the email address
 
 ## Number of registrations in time
 
 - Data: [n_registrations_in_time.csv](n_registrations_in_time.csv)
 - Code: [plot_n_registrations_in_time.R](plot_n_registrations_in_time.R)
-    - `date`: the date, in `DD/MM/YYYY` format
-    - `n`: the amount of registrations at that day
-    - `cumulative`: the total amount of registrations
+  - `date`: the date, in `DD/MM/YYYY` format
+  - `n`: the amount of registrations at that day
+  - `cumulative`: the total amount of registrations
       at the end of that day
 
 ![Number of registrations in time and predictions](n_registrations_in_time_and_predictions.png)
 
-
 ## Number of learners present in time
 
 - Data: [20250304_counts.csv](20250304_counts.csv)
diff --git a/docs/data/20251014/README.md b/docs/data/20251014/README.md
@@ -7,17 +7,17 @@ Here are the registrations we've received,
 with an MD5 of the email address.
 
 - Data: [registrations.csv](registrations.csv)
-    - `timestamp`: the timestamp in `DD/MM/YYYY hh:mm:ss`
+  - `timestamp`: the timestamp in `DD/MM/YYYY hh:mm:ss`
       format
-    - `email`: the MD5 hash of the email address
+  - `email`: the MD5 hash of the email address
 
 ## Number of registrations in time
 
 - Data: [n_registrations_in_time.csv](n_registrations_in_time.csv)
 - Code: [plot_n_registrations_in_time.R](plot_n_registrations_in_time.R)
-    - `date`: the date, in `DD/MM/YYYY` format
-    - `n`: the amount of registrations at that day
-    - `cumulative`: the total amount of registrations
+  - `date`: the date, in `DD/MM/YYYY` format
+  - `n`: the amount of registrations at that day
+  - `cumulative`: the total amount of registrations
       at the end of that day
 
 ![Number of registrations in time and predictions](n_registrations_in_time_and_predictions.png)
diff --git a/docs/data/README.md b/docs/data/README.md
@@ -24,7 +24,6 @@ No |Date      |Source                                         |`Nr`|`Nlm`|`Nla`|
 - `Nla`: Number of learners in the afternoon. `.` means 'Not measured'
 - `Ne`: Number of evaluations filled in. `.` means 'Not measured'
 
-
 ## Number of learners present
 
 No |Date      |Data
diff --git a/docs/evaluations/20240118/README.md b/docs/evaluations/20240118/README.md
@@ -70,7 +70,6 @@ I wonder where that quick skip from basic to intermediate happened.
 I'd guess at file IO, which indeed is a jump from book chapter 3 to chapter 13.
 Next time, I should invest some time in bridging this gap.
 
-
 > For the Python session in the last day, we got a lot of practice time
 > but time was much behind
 > the schedule. I was also stuck with some errors.
diff --git a/docs/evaluations/20250424/README.md b/docs/evaluations/20250424/README.md
@@ -37,7 +37,6 @@
 
 ![Confidences per question](confidences_per_question.png)
 
-
 ## Analysis, pre and post
 
 - [analyse_pre_post.R](analyse_pre_post.R)
diff --git a/docs/evaluations/20260303/README.md b/docs/evaluations/20260303/README.md
@@ -67,7 +67,6 @@ From [survey_end.csv](survey_end.csv):
 
 From emails:
 
-
 ```bash
 Dear Richel,
 
@@ -85,7 +84,6 @@ Best regards,
 [name]
 ```
 
-
 ## Analysis, only end
 
 - script used: [analyse.R](analyse.R)
@@ -130,4 +128,3 @@ Best regards,
 |I can read and write to/from a file in Python                             | 1.6190476|  4.000000| 0.0008541|TRUE      |
 
 <!-- markdownlint-enable MD013 -->
-
diff --git a/docs/evaluations/20260420/README.md b/docs/evaluations/20260420/README.md
@@ -36,7 +36,6 @@ From [survey_end_text_question.txt](survey_end_text_question.txt):
   I really appreciated that he provided the Python textbook,
   which was very helpful for learning more and completing the exercises.
 
-
 ## Analysis, only end
 
 - script used: [analyse.R](analyse.R)
@@ -81,4 +80,3 @@ From [survey_end_text_question.txt](survey_end_text_question.txt):
 |I can read and write to/from a file in Python                             | 1.7619048|       3.7| 0.0072581|TRUE      |
 
 <!-- markdownlint-enable MD013 -->
-
diff --git a/docs/lesson_plans/20240118/README.md b/docs/lesson_plans/20240118/README.md
@@ -86,4 +86,3 @@ Negative feedback that I will not enjoy and not respond to:
  14:15-15:00   | File IO, command line arguments
  15:00-15:15   | Break
  15:15-16:00   | Graphics, functions
-
diff --git a/docs/lesson_plans/20250304/README.md b/docs/lesson_plans/20250304/README.md
@@ -134,8 +134,8 @@ Teaching form:
 
 - Use rooms called after the HPC clusters first. Keep these
   rooms until all have logged in
-    - [x] Check how easy this is to do in Zoom
-        - This needs to be done by hand. Hence, use a table instead
+  - [x] Check how easy this is to do in Zoom
+    - This needs to be done by hand. Hence, use a table instead
 - Randomly shuffle people when we start doing 'regular Python'
 
 With that, I think I am ready to go!
diff --git a/docs/lesson_plans/20250424/README.md b/docs/lesson_plans/20250424/README.md
@@ -10,8 +10,7 @@ From [the past course iteration's reflection](../../reflections/20250304/README.
 - [x] Add a 'Further learning' session
 
 - [x] Merge 'The way of the program' and 'Working with Python scripts'
-    - [ ] Do so next iteration
+  - [ ] Do so next iteration
 - [x] Merge 'Variables, expressions and statements: operators'
   and 'Variables, expressions and statements: user input'
-    - [ ] Do so next iteration
-
+  - [ ] Do so next iteration
diff --git a/docs/lesson_plans/20251014/README.md b/docs/lesson_plans/20251014/README.md
@@ -49,4 +49,3 @@ Let's first go through the last reflections:
   no time
 - [Low] Assume variables are understood well enough:
   no time
-
diff --git a/docs/lesson_plans/20260420/README.md b/docs/lesson_plans/20260420/README.md
@@ -4,7 +4,6 @@
 - Working form: mostly in breakout rooms
 - Registrations: 50
 
-
 ## Question to observer
 
 Goal of the meeting:
diff --git a/docs/lesson_plans/README.md b/docs/lesson_plans/README.md
@@ -17,4 +17,3 @@ No |Date      |Lesson plans
 6  |2025-11-27|[Lesson plan](20251127/README.md)
 7  |2026-03-03|[Lesson plan](20260303/README.md)
 8  |2026-04-20|[Lesson plan](20260420/README.md)
-
diff --git a/docs/prereqs/README.md b/docs/prereqs/README.md
@@ -26,4 +26,3 @@ Before the course, you must have done these **five** things:
 ???- question "What if I have another question?"
 
     - See the [Frequently Asked Questions section](../faq.md)
-
diff --git a/docs/reflections/20240830/README.md b/docs/reflections/20240830/README.md
@@ -26,8 +26,8 @@ I feel that functions can be skipped, as there we leave
 the domain of an intro course.
 
 - [x] Weak prior of exercise VET 2: operators
-    - [x] Add better ones to course material
-    - [x] I already did so, I just forgot to `git push`
+  - [x] Add better ones to course material
+  - [x] I already did so, I just forgot to `git push`
 - I feel there are too much splits in the sessions.
   Should I clump those together yes/no?
   Let's see if this comes up at the evaluation!
diff --git a/docs/reflections/20250304/README.md b/docs/reflections/20250304/README.md
@@ -6,7 +6,6 @@
 - Number of registrations: 63
 - Number of learners: 32 learners (50% show-up rate)
 
-
 ## Schedule
 
 <!-- markdownlint-disable MD013 --><!-- Tables cannot be split up over lines, hence will break 80 characters per line -->
@@ -143,7 +142,6 @@ In Python, I can use a for loop|1.8|Agree: was not taught
 
 - [ ] Add an image to show what an interpreter does
 
-
 Texts:
 
 - I have been following during the morning only.
diff --git a/docs/reflections/20250424/README.md b/docs/reflections/20250424/README.md
@@ -72,25 +72,25 @@ this: learners can change their name themselves.
 ## Feedback Linus
 
 - What went well?
-    - All students went through all of the important things
-        - RB: definitely!
-    - Sending more advanced Python students home was a good thing;
+  - All students went through all of the important things
+    - RB: definitely!
+  - Sending more advanced Python students home was a good thing;
       they came there for the HPC part
-        - RB: agree
-    - Exercises and material is very good
+    - RB: agree
+  - Exercises and material is very good
 
 - What are features of the course?
 
-    - Some learners get lost in the book (it's a good book),
+  - Some learners get lost in the book (it's a good book),
       doing exercises on their own
 
 - What could be improved?
 
-    - Students that already know Python could be sent back home earlier
-        - RB: agree, at 11:00 we could let the first people go :-)
-    - Some learners do the exercises in the book and then forget about
+  - Students that already know Python could be sent back home earlier
+    - RB: agree, at 11:00 we could let the first people go :-)
+  - Some learners do the exercises in the book and then forget about
       the course material.
-        - RB: agree: remove the mention of the exercises in the book
+    - RB: agree: remove the mention of the exercises in the book
           and sent them to the exercises in the course material (only)
 
 ## Evaluation results
diff --git a/docs/reflections/20251014/README.md b/docs/reflections/20251014/README.md
@@ -176,4 +176,3 @@ The course was appreciated as a beginner course and criticized for being to
 non-collaborative. I agree that there is room for improvement there!
 
 I would rate my own teaching a 7 out of 10, as the end was weak.
-
diff --git a/docs/reflections/20251127/README.md b/docs/reflections/20251127/README.md
@@ -133,4 +133,3 @@ Conclusions so far: the new sessions did well, nothing needs to be changed.
 
 Peer observation feedback can be found at
 [my teaching repository](https://richelbilderbeek.github.io/teaching/peer_observations/20251127.pdf).
-
diff --git a/docs/reflections/20260420/README.md b/docs/reflections/20260420/README.md
@@ -351,7 +351,7 @@ to encourage camera usage.
 She said the parts flowed naturally into one another. She did mention
 that the Priors felt rushed. And I agree with that. My intention
 is to ask a question, wait three seconds and then prompt for an answer.
-I feel that due to Zoom uncertainty I went too quick. 
+I feel that due to Zoom uncertainty I went too quick.
 
 - [ ] Wait 3 seconds after asking a question in the Prior
 
@@ -360,7 +360,7 @@ visually as text. I agreed with that idea; to have two types of inputs
 and I did look for captions in Zoom (and could not find it).
 However, I feel I should at least try this once, to see how this feels.
 
-- [ ] Try out two input methods for asking a question in the Prior 
+- [ ] Try out two input methods for asking a question in the Prior
 
 - Was there a part that had an unclear purpose?
 
diff --git a/docs/summary.md b/docs/summary.md
@@ -111,4 +111,3 @@ for v in xs:
     g.write(v)
 g.close()
 ```
-

Original file line number	Diff line number	Diff line change
`@@ -25,4 +25,3 @@ Filename \|Description`
`25`	`25`	[`.markdownlintignore`](.markdownlintignore)\|Files ignored by the Markdown linter, use [`./scripts/fix_markdown_style_errors.sh`](scripts/fix_markdown_style_errors.sh) to do markdown linting locally
`26`	`26`
`27`	`27`	`<!-- markdownlint-enable MD013 -->`
`28`		`-`
Original file line number	Diff line number	Diff line change
`@@ -24,4 +24,3 @@ Registration closes at around 2026-02-24 23:59.`
`24`	`24`	`## If you work on your own HPC cluster, what is its name?`
`25`	`25`
`26`	`26`	- `[open question]`
`27`		`-`