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Merge pull request #1103 from marinakraeva/patch-30
Update slurm.md
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sn_collections/_guides/use/slurm.md

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@@ -73,7 +73,7 @@ The following example commands illustrate an interactive session where the user
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Start the interactive session:
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```
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$ srun --pty -p short -A slurm_account_name -t 01:00:00 -n 20 -N 1 /bin/bash -l
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$ srun --pty -p ceres -A slurm_account_name -t 01:00:00 -n 20 -N 1 /bin/bash -l
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```
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Load NCBI-BLAST+ on the compute node:
@@ -140,7 +140,7 @@ Jobs can be submitted to various partitions or queues using SLURM's `sbatch` com
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```bash
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#!/bin/bash
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#SBATCH --job-name="blastp" #name of this job
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#SBATCH -p short #name of the partition (queue) you are submitting to
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#SBATCH -p ceres #name of the partition (queue) you are submitting to
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#SBATCH -N 1 #number of nodes in this job
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#SBATCH -n 40 #number of cores/tasks in this job, you get all 20 physical cores with 2 threads per core with hyper-threading
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#SBATCH -t 01:00:00 #time allocated for this job hours:mins:seconds
@@ -188,7 +188,7 @@ Now create a batch job script (OMPjob.sh) to test number of threads you requeste
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```bash
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#!/bin/bash
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#SBATCH --job-name=OpenMP
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#SBATCH -p short
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#SBATCH -p ceres
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#SBATCH -N 1
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#SBATCH -n 20
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#SBATCH --threads-per-core=1
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```bash
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#!/bin/bash
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#SBATCH --job-name=raxmlMPI
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#SBATCH -p short
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#SBATCH -p ceres
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#SBATCH -N 2
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#SBATCH --ntasks-per-node=40
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#SBATCH -A slurm_account_name

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