From 8f3628a32aae78e9697226c38d5685bdd2953133 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 08:57:48 -0700 Subject: [PATCH 01/50] move to MLGeo --- README.md | 16 ++++++++-------- 1 file changed, 8 insertions(+), 8 deletions(-) diff --git a/README.md b/README.md index 66f651f..922a5b7 100644 --- a/README.md +++ b/README.md @@ -2,11 +2,11 @@ This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) -[![Action Status](https://github.com/UW-ESS-DS/590-Spr21-image/workflows/CI/badge.svg)](https://github.com/UW-ESS-DS/590-Spr21-image/actions) -[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/590-spr21-image)](https://hub.docker.com/r/uwessds/590-spr21-image/tags) -[![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/590-Spr21-image/main?urlpath=lab) +[![Action Status](https://github.com/UW-ESS-DS/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-ESS-DS/MLGeo-image/actions) +[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/MLGeo-image)](https://hub.docker.com/r/uwessds/MLGeo-image/tags) +[![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) -https://hub.docker.com/r/uwessds/590-spr21-image/tags +https://hub.docker.com/r/uwessds/MLGeo-image/tags ### How to use: @@ -14,8 +14,8 @@ build with GitHub Actions simply by pushing to GitHub * pull requests trigger image building without pushing to DockerHub ``` -git clone https://github.com/UW-ESS-DS/590-Spr21-image -cd 590-Spr21-image +git clone https://github.com/UW-ESS-DS/MLGeo-image +cd MLGeo-image #git checkout dev # make sure dev branch is up-to-date with master git merge master @@ -29,7 +29,7 @@ git push ### Pull your image to run a local JupyterLab session ``` -export IMAGE=uwessds/590-spr21-image:latest +export IMAGE=uwessds/MLGeo-image:latest export NAME=ESS590 docker run -it --name $NAME -p 8888:8888 $IMAGE jupyter lab --ip 0.0.0.0 docker stop $NAME @@ -37,5 +37,5 @@ docker rm $NAME ``` ### Point to a specific tagged image in JupyterHub config -(image: uwessds/590-spr21-image:8192752e54fa) +(image: uwessds/MLGeo-image:8192752e54fa) https://zero-to-jupyterhub.readthedocs.io/en/latest/reference/reference.html?highlight=profile_list#singleuser-profilelist From 4f139c1c26558c4eb08e3135831c4543dff12a65 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:00:42 -0700 Subject: [PATCH 02/50] update to mlgeo --- .github/workflows/PR.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/PR.yml b/.github/workflows/PR.yml index a35540e..6a70db3 100644 --- a/.github/workflows/PR.yml +++ b/.github/workflows/PR.yml @@ -11,9 +11,9 @@ jobs: uses: jupyterhub/repo2docker-action@master with: NO_PUSH: 'true' - IMAGE_NAME: "uwessds/590-spr21-image" + IMAGE_NAME: "uwessds/MLGeo-image" - name: Report Image Size and Conda Packages run: | docker images - docker run uwessds/590-spr21-image conda list --export + docker run uwessds/MLGeo-image conda list --export From abd1bc1272363915e7c84105b588d795759afc89 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:01:14 -0700 Subject: [PATCH 03/50] update to MLgeo --- .github/workflows/CI.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index e2f2954..db01c17 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -20,9 +20,9 @@ jobs: with: DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} - IMAGE_NAME: "uwessds/590-spr21-image" + IMAGE_NAME: "uwessds/MLGeo-image" - name: Report Image Size and Conda Packages run: | docker images - docker run uwessds/590-spr21-image:latest conda list --export + docker run uwessds/MLGeo-image:latest conda list --export From 4e153260433c102b6831f60f87fa90f880540be8 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:01:55 -0700 Subject: [PATCH 04/50] update to MLgeo --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 922a5b7..e6db965 100644 --- a/README.md +++ b/README.md @@ -1,4 +1,4 @@ -# UW-ESS-DS 590-Spr21-image JupyterHub Image Builder +# UW-ESS-DS MLGeo-image JupyterHub Image Builder This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) From 4645e998ee330e802d43e2778495a5f887314fed Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:07:23 -0700 Subject: [PATCH 05/50] simple environment for just SKlearn & obspy --- environment.yml | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 5bf116c..044ef73 100644 --- a/environment.yml +++ b/environment.yml @@ -1,4 +1,4 @@ -name: 590spring21_ds +name: mlgeo_sk channels: - conda-forge dependencies: @@ -20,3 +20,4 @@ dependencies: - xarray - nbgitpuller - pip=20 + - obspy From b6d05bc28c74c9eaac751d1bbc387de622095ec1 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:10:19 -0700 Subject: [PATCH 06/50] lowercase --- README.md | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/README.md b/README.md index e6db965..24a4ff2 100644 --- a/README.md +++ b/README.md @@ -6,7 +6,7 @@ This repository builds a [JupyterHub](https://jupyter.org/hub) environment with [![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/MLGeo-image)](https://hub.docker.com/r/uwessds/MLGeo-image/tags) [![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) -https://hub.docker.com/r/uwessds/MLGeo-image/tags +https://hub.docker.com/r/uwessds/mlgeo-image/tags ### How to use: @@ -14,7 +14,7 @@ build with GitHub Actions simply by pushing to GitHub * pull requests trigger image building without pushing to DockerHub ``` -git clone https://github.com/UW-ESS-DS/MLGeo-image +git clone https://github.com/UW-ESS-DS/mlgeo-image cd MLGeo-image #git checkout dev # make sure dev branch is up-to-date with master @@ -37,5 +37,5 @@ docker rm $NAME ``` ### Point to a specific tagged image in JupyterHub config -(image: uwessds/MLGeo-image:8192752e54fa) +(image: uwessds/mlgeo-image:8192752e54fa) https://zero-to-jupyterhub.readthedocs.io/en/latest/reference/reference.html?highlight=profile_list#singleuser-profilelist From 4ff5f5020c7dd26fff19be1ccbdf2dc7922c4f83 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:10:50 -0700 Subject: [PATCH 07/50] lowercase --- .github/workflows/CI.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index db01c17..2427d49 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -25,4 +25,4 @@ jobs: - name: Report Image Size and Conda Packages run: | docker images - docker run uwessds/MLGeo-image:latest conda list --export + docker run uwessds/mlgeo-image:latest conda list --export From c7d0a4c70dd4712831a28df9b4ec0a90b3541572 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:11:10 -0700 Subject: [PATCH 08/50] lowercase --- .github/workflows/PR.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.github/workflows/PR.yml b/.github/workflows/PR.yml index 6a70db3..dc4dcb1 100644 --- a/.github/workflows/PR.yml +++ b/.github/workflows/PR.yml @@ -11,9 +11,9 @@ jobs: uses: jupyterhub/repo2docker-action@master with: NO_PUSH: 'true' - IMAGE_NAME: "uwessds/MLGeo-image" + IMAGE_NAME: "uwessds/mlgeo-image" - name: Report Image Size and Conda Packages run: | docker images - docker run uwessds/MLGeo-image conda list --export + docker run uwessds/mlgeo-image conda list --export From 6e2fd43642c38a938ec35f1d05e5fd4b190c9739 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:25:41 -0700 Subject: [PATCH 09/50] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 24a4ff2..191f3c9 100644 --- a/README.md +++ b/README.md @@ -37,5 +37,5 @@ docker rm $NAME ``` ### Point to a specific tagged image in JupyterHub config -(image: uwessds/mlgeo-image:8192752e54fa) +(image: uwessds/mlgeo-image:latest) https://zero-to-jupyterhub.readthedocs.io/en/latest/reference/reference.html?highlight=profile_list#singleuser-profilelist From 9202b659ef9a77a69da21a5f860bb257cb67ac83 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:27:23 -0700 Subject: [PATCH 10/50] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 191f3c9..b5bb9c7 100644 --- a/README.md +++ b/README.md @@ -29,7 +29,7 @@ git push ### Pull your image to run a local JupyterLab session ``` -export IMAGE=uwessds/MLGeo-image:latest +export IMAGE=uwessds/mlgeo-image:latest export NAME=ESS590 docker run -it --name $NAME -p 8888:8888 $IMAGE jupyter lab --ip 0.0.0.0 docker stop $NAME From dcac0aaf6eab1ba7ce12532d4d6203292e30901f Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 21 Sep 2022 09:27:56 -0700 Subject: [PATCH 11/50] lower case --- .github/workflows/CI.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 2427d49..9bb23d3 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -20,7 +20,7 @@ jobs: with: DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} - IMAGE_NAME: "uwessds/MLGeo-image" + IMAGE_NAME: "uwessds/mlgeo-image" - name: Report Image Size and Conda Packages run: | From 9e766791f1d626c5999ba7d10acde2a47ede57fe Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Wed, 21 Sep 2022 10:53:14 -0700 Subject: [PATCH 12/50] remove quotes --- .github/workflows/CI.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/CI.yml b/.github/workflows/CI.yml index 9bb23d3..b7bf02a 100644 --- a/.github/workflows/CI.yml +++ b/.github/workflows/CI.yml @@ -20,7 +20,7 @@ jobs: with: DOCKER_USERNAME: ${{ secrets.DOCKER_USERNAME }} DOCKER_PASSWORD: ${{ secrets.DOCKER_PASSWORD }} - IMAGE_NAME: "uwessds/mlgeo-image" + IMAGE_NAME: uwessds/mlgeo-image - name: Report Image Size and Conda Packages run: | From ffa74132f047a8f1f1731895570f9f0706e271be Mon Sep 17 00:00:00 2001 From: Scott Henderson Date: Wed, 21 Sep 2022 11:07:18 -0700 Subject: [PATCH 13/50] python 3.10, jupyterlab --- environment.yml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/environment.yml b/environment.yml index 044ef73..70b6afb 100644 --- a/environment.yml +++ b/environment.yml @@ -2,8 +2,8 @@ name: mlgeo_sk channels: - conda-forge dependencies: - - python=3.9 - - jupyter + - python=3.10 + - jupyterlab - earthpy - folium - geopandas @@ -19,5 +19,5 @@ dependencies: - shapely - xarray - nbgitpuller - - pip=20 + - pip - obspy From 7cec831c89a871815b5a869e023b7c7409187908 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 13:29:22 -0700 Subject: [PATCH 14/50] add plotly --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 044ef73..c3fc6cb 100644 --- a/environment.yml +++ b/environment.yml @@ -5,7 +5,7 @@ dependencies: - python=3.9 - jupyter - earthpy - - folium + - plotly - geopandas - matplotlib - pymongo From a66784ceb99cab59bd2cd8be1001d9afc4f72f44 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 13:30:25 -0700 Subject: [PATCH 15/50] typo --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index b5bb9c7..75b1caf 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) [![Action Status](https://github.com/UW-ESS-DS/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-ESS-DS/MLGeo-image/actions) -[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/MLGeo-image)](https://hub.docker.com/r/uwessds/MLGeo-image/tags) +[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/MLGeo-image)](https://hub.docker.com/r/uwessds/mlgeo-image/tags) [![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) https://hub.docker.com/r/uwessds/mlgeo-image/tags From ccb465b73f231e4a93592ff4b645a6a4e4fc93e4 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 13:31:52 -0700 Subject: [PATCH 16/50] Update README.md --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 75b1caf..3bc46c6 100644 --- a/README.md +++ b/README.md @@ -3,7 +3,7 @@ This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) [![Action Status](https://github.com/UW-ESS-DS/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-ESS-DS/MLGeo-image/actions) -[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/MLGeo-image)](https://hub.docker.com/r/uwessds/mlgeo-image/tags) +[![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/mlgeo-image)](https://hub.docker.com/r/uwessds/mlgeo-image/tags) [![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) https://hub.docker.com/r/uwessds/mlgeo-image/tags From 791422008da684fc8a92fd67cb4b94e97c2e6ba5 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 14:03:00 -0700 Subject: [PATCH 17/50] Update environment.yml --- environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/environment.yml b/environment.yml index c3fc6cb..feff94e 100644 --- a/environment.yml +++ b/environment.yml @@ -12,7 +12,6 @@ dependencies: - netCDF4 - numpy - pandas - - pycrs - rasterio - scipy - scikit-learn From dcca3eb2f3032b2b7f4d055bb277ce4176dc8585 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 21:51:55 -0700 Subject: [PATCH 18/50] add pyarrow for parquet --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index feff94e..8a0fdc5 100644 --- a/environment.yml +++ b/environment.yml @@ -4,7 +4,7 @@ channels: dependencies: - python=3.9 - jupyter - - earthpy + - pyarrow - plotly - geopandas - matplotlib From cdc2e03f29d6ac6a36fffa54b6fb043fe2be409e Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 21:54:07 -0700 Subject: [PATCH 19/50] Update environment.yml --- environment.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/environment.yml b/environment.yml index 8a0fdc5..7a12e56 100644 --- a/environment.yml +++ b/environment.yml @@ -2,8 +2,8 @@ name: mlgeo_sk channels: - conda-forge dependencies: - - python=3.9 - - jupyter + - python=3.10 + - jupyterlab - pyarrow - plotly - geopandas From 87c0219be10c5008f20f84de5bf45a698fb0e031 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 9 Oct 2022 21:55:04 -0700 Subject: [PATCH 20/50] Update environment.yml --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index f4f466a..d627ba2 100644 --- a/environment.yml +++ b/environment.yml @@ -4,7 +4,7 @@ channels: dependencies: - python=3.10 - jupyterlab - - earthpy + - pyarrow - plotly - geopandas - matplotlib From be002d0523e2271b81099ce4125952eacb67e928 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 08:44:41 -0700 Subject: [PATCH 21/50] Update environment.yml --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 7a12e56..b795e90 100644 --- a/environment.yml +++ b/environment.yml @@ -2,7 +2,7 @@ name: mlgeo_sk channels: - conda-forge dependencies: - - python=3.10 + - python=3.9 - jupyterlab - pyarrow - plotly From 0537b5fde2593362591517b3af9f507e2a41eb8b Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 09:03:39 -0700 Subject: [PATCH 22/50] Update environment.yml --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index b795e90..9ef15fc 100644 --- a/environment.yml +++ b/environment.yml @@ -2,7 +2,7 @@ name: mlgeo_sk channels: - conda-forge dependencies: - - python=3.9 + - python=3.8 - jupyterlab - pyarrow - plotly From 30a2c229e76d6175377a57e961905108987e3aaf Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 13:42:55 -0700 Subject: [PATCH 23/50] remove scipy --- environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/environment.yml b/environment.yml index 9ef15fc..6d0ac88 100644 --- a/environment.yml +++ b/environment.yml @@ -13,7 +13,6 @@ dependencies: - numpy - pandas - rasterio - - scipy - scikit-learn - shapely - xarray From 500340321caccafc7f3ced6ab64e66153754917a Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 13:57:52 -0700 Subject: [PATCH 24/50] make it small! --- environment.yml | 3 --- 1 file changed, 3 deletions(-) diff --git a/environment.yml b/environment.yml index 6d0ac88..34196fa 100644 --- a/environment.yml +++ b/environment.yml @@ -8,8 +8,6 @@ dependencies: - plotly - geopandas - matplotlib - - pymongo - - netCDF4 - numpy - pandas - rasterio @@ -18,4 +16,3 @@ dependencies: - xarray - nbgitpuller - pip=20 - - obspy From 110a42ff9ab6328485e7a06e481dfcad18d54012 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 13:58:56 -0700 Subject: [PATCH 25/50] Update environment.yml --- environment.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/environment.yml b/environment.yml index bb787bb..6cdcd47 100644 --- a/environment.yml +++ b/environment.yml @@ -17,5 +17,4 @@ dependencies: - shapely - xarray - nbgitpuller - - pip - - obspy + - pip=20 From 984a8e87812d6ce5896f3d85fa867f5504bc7f62 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 10 Oct 2022 13:59:06 -0700 Subject: [PATCH 26/50] Update environment.yml --- environment.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/environment.yml b/environment.yml index 6cdcd47..34196fa 100644 --- a/environment.yml +++ b/environment.yml @@ -8,8 +8,6 @@ dependencies: - plotly - geopandas - matplotlib - - pymongo - - netCDF4 - numpy - pandas - rasterio From 2d4c4e4464bf1abf654c0fd997958bb4a3520227 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 17 Oct 2022 05:44:35 -0700 Subject: [PATCH 27/50] add fun packages --- environment.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/environment.yml b/environment.yml index 34196fa..e92d6c5 100644 --- a/environment.yml +++ b/environment.yml @@ -14,5 +14,8 @@ dependencies: - scikit-learn - shapely - xarray + - h5py + - netcdf4 + - zarr - nbgitpuller - pip=20 From 5304a4e766d48e8b610b7c745159659d614d75d6 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 17 Oct 2022 07:15:27 -0700 Subject: [PATCH 28/50] add wget --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index e92d6c5..7696d70 100644 --- a/environment.yml +++ b/environment.yml @@ -18,4 +18,5 @@ dependencies: - netcdf4 - zarr - nbgitpuller + - wget - pip=20 From 536b9342721c62d04897558c2faee204656e0418 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 17 Oct 2022 09:06:53 -0700 Subject: [PATCH 29/50] add stuff --- environment.yml | 3 +++ 1 file changed, 3 insertions(+) diff --git a/environment.yml b/environment.yml index 7696d70..4cb9b11 100644 --- a/environment.yml +++ b/environment.yml @@ -19,4 +19,7 @@ dependencies: - zarr - nbgitpuller - wget + - folium + - geopandas + - pycrs - pip=20 From 764f6d87b2a8faff0fd1a2d92b941058c3f15b1a Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 17 Oct 2022 09:09:56 -0700 Subject: [PATCH 30/50] add pooch --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 4cb9b11..8a838f9 100644 --- a/environment.yml +++ b/environment.yml @@ -22,4 +22,5 @@ dependencies: - folium - geopandas - pycrs + - pooch - pip=20 From 4e64c8a37553fb4b278818efb6944519b8e9c790 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 19 Oct 2022 06:26:24 -0700 Subject: [PATCH 31/50] add scipy --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 8a838f9..a3ad97b 100644 --- a/environment.yml +++ b/environment.yml @@ -9,6 +9,7 @@ dependencies: - geopandas - matplotlib - numpy + - scipy - pandas - rasterio - scikit-learn From eb252155461a8415030d4b590050b14ef4a945d3 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Fri, 21 Oct 2022 08:26:01 -0700 Subject: [PATCH 32/50] Tsftesh --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index a3ad97b..a28eeb1 100644 --- a/environment.yml +++ b/environment.yml @@ -24,4 +24,5 @@ dependencies: - geopandas - pycrs - pooch + - tsftesh - pip=20 From 7bb79e433aaf50bced5d7a4cbb49b440199356db Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Fri, 21 Oct 2022 08:33:11 -0700 Subject: [PATCH 33/50] Tsfresh not tsftesh --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index a28eeb1..307472e 100644 --- a/environment.yml +++ b/environment.yml @@ -24,5 +24,5 @@ dependencies: - geopandas - pycrs - pooch - - tsftesh + - tsfresh - pip=20 From 7fd28e80b8697e0742a7a71461cf0360df08ec71 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Fri, 21 Oct 2022 09:46:25 -0700 Subject: [PATCH 34/50] add obspy --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 307472e..863c27c 100644 --- a/environment.yml +++ b/environment.yml @@ -24,5 +24,6 @@ dependencies: - geopandas - pycrs - pooch + - obspy - tsfresh - pip=20 From 4bade587ed51d6abcb0157c3faa032d2a08e7ed9 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 31 Oct 2022 08:52:33 -0700 Subject: [PATCH 35/50] Update environment.yml --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 863c27c..8a2ddf2 100644 --- a/environment.yml +++ b/environment.yml @@ -25,5 +25,6 @@ dependencies: - pycrs - pooch - obspy + - seaborn - tsfresh - pip=20 From 06041e6317ba8988d62836c8a6581a4e2e3e1654 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Sun, 13 Nov 2022 16:41:53 -0800 Subject: [PATCH 36/50] Update environment.yml --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index 8a2ddf2..cdc58ed 100644 --- a/environment.yml +++ b/environment.yml @@ -27,4 +27,5 @@ dependencies: - obspy - seaborn - tsfresh + - auto-sklearn - pip=20 From 6d8ee61ff26a02d9cb3055dcbf5214f2073b62bf Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 14 Nov 2022 09:54:00 -0800 Subject: [PATCH 37/50] add torch --- environment.yml | 2 ++ 1 file changed, 2 insertions(+) diff --git a/environment.yml b/environment.yml index cdc58ed..2a73e28 100644 --- a/environment.yml +++ b/environment.yml @@ -28,4 +28,6 @@ dependencies: - seaborn - tsfresh - auto-sklearn + - torch + - torch-vision - pip=20 From 9a8bdacfcb897f30ccf13899611edf1b9ff31f01 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 14 Nov 2022 09:54:37 -0800 Subject: [PATCH 38/50] Update environment.yml --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 2a73e28..6439f8a 100644 --- a/environment.yml +++ b/environment.yml @@ -29,5 +29,5 @@ dependencies: - tsfresh - auto-sklearn - torch - - torch-vision + - torchvision - pip=20 From 07756e02098b67c25ed9603e078faa3062cddb39 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 14 Nov 2022 09:54:46 -0800 Subject: [PATCH 39/50] Update environment.yml --- environment.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/environment.yml b/environment.yml index 6439f8a..04ca834 100644 --- a/environment.yml +++ b/environment.yml @@ -28,6 +28,6 @@ dependencies: - seaborn - tsfresh - auto-sklearn - - torch + - pytorch - torchvision - pip=20 From 0562c61ffe51ce0673cc281ca7ee5efcb2ceda1a Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 21 Nov 2022 09:12:13 -0800 Subject: [PATCH 40/50] add torch --- environment.yml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/environment.yml b/environment.yml index 04ca834..bdce57f 100644 --- a/environment.yml +++ b/environment.yml @@ -26,8 +26,7 @@ dependencies: - pooch - obspy - seaborn - - tsfresh - - auto-sklearn - pytorch - torchvision + - torchaudio - pip=20 From 1219dbcfc40e19f34b5b8c37fbe8a1f0534f32aa Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 21 Nov 2022 09:53:43 -0800 Subject: [PATCH 41/50] rm audio --- environment.yml | 1 - 1 file changed, 1 deletion(-) diff --git a/environment.yml b/environment.yml index bdce57f..b9b8b19 100644 --- a/environment.yml +++ b/environment.yml @@ -28,5 +28,4 @@ dependencies: - seaborn - pytorch - torchvision - - torchaudio - pip=20 From fa85e7a4db5dfc84906edc4a81de1cae3e64fdf0 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 30 Nov 2022 08:05:56 -0800 Subject: [PATCH 42/50] add keras --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index b9b8b19..b074150 100644 --- a/environment.yml +++ b/environment.yml @@ -28,4 +28,5 @@ dependencies: - seaborn - pytorch - torchvision + - keras - pip=20 From 7ed8d45086322866a4462b2ab0199ea436004650 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 30 Nov 2022 08:19:19 -0800 Subject: [PATCH 43/50] add TF --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index b074150..8a4ce90 100644 --- a/environment.yml +++ b/environment.yml @@ -30,3 +30,4 @@ dependencies: - torchvision - keras - pip=20 + - tensorflow From c455314040b5812f54c35d9547e748b6058517bc Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Thu, 1 Dec 2022 08:49:15 -0800 Subject: [PATCH 44/50] rm keras+TF --- environment.yml | 2 -- 1 file changed, 2 deletions(-) diff --git a/environment.yml b/environment.yml index 8a4ce90..b9b8b19 100644 --- a/environment.yml +++ b/environment.yml @@ -28,6 +28,4 @@ dependencies: - seaborn - pytorch - torchvision - - keras - pip=20 - - tensorflow From 986684794273b445396633e81d3ae4ac0918d470 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Wed, 29 Nov 2023 05:59:59 -0800 Subject: [PATCH 45/50] Update environment.yml --- environment.yml | 1 + 1 file changed, 1 insertion(+) diff --git a/environment.yml b/environment.yml index b9b8b19..bd387c1 100644 --- a/environment.yml +++ b/environment.yml @@ -28,4 +28,5 @@ dependencies: - seaborn - pytorch - torchvision + - torchinfo - pip=20 From 307ab516e3859293f783867033b08dd8a52e9283 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Mon, 23 Sep 2024 11:52:51 -0700 Subject: [PATCH 46/50] reduced image for 2024 offering --- environment.yml | 13 ------------- 1 file changed, 13 deletions(-) diff --git a/environment.yml b/environment.yml index bd387c1..ed6dec6 100644 --- a/environment.yml +++ b/environment.yml @@ -5,27 +5,14 @@ dependencies: - python=3.8 - jupyterlab - pyarrow - - plotly - - geopandas - matplotlib - numpy - scipy - pandas - - rasterio - scikit-learn - - shapely - - xarray - - h5py - - netcdf4 - - zarr - nbgitpuller - wget - - folium - - geopandas - - pycrs - pooch - - obspy - - seaborn - pytorch - torchvision - torchinfo From 710da1a7bdfd255808cf0c879e0cf54e4f740a61 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Tue, 24 Sep 2024 17:23:29 -0700 Subject: [PATCH 47/50] Update environment.yml --- environment.yml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/environment.yml b/environment.yml index ed6dec6..7cb858a 100644 --- a/environment.yml +++ b/environment.yml @@ -1,8 +1,8 @@ -name: mlgeo_sk +name: mlgeo channels: - conda-forge dependencies: - - python=3.8 + - python=3.11 - jupyterlab - pyarrow - matplotlib From 20c4f9a918b5b319f7b95f8f1064fdf1ad24a32c Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Tue, 24 Sep 2024 17:32:09 -0700 Subject: [PATCH 48/50] clean up orga name --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 3bc46c6..666a37b 100644 --- a/README.md +++ b/README.md @@ -2,7 +2,7 @@ This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) -[![Action Status](https://github.com/UW-ESS-DS/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-ESS-DS/MLGeo-image/actions) +[![Action Status](https://github.com/UW-MLGEO/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-MLGEO/MLGeo-image/actions) [![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/mlgeo-image)](https://hub.docker.com/r/uwessds/mlgeo-image/tags) [![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) From ae75b334e6babf3ee6376d0dd4978b2cc9e7712d Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Tue, 24 Sep 2024 17:32:41 -0700 Subject: [PATCH 49/50] change ESS-DS to MLGEO --- README.md | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/README.md b/README.md index 666a37b..03f1c6f 100644 --- a/README.md +++ b/README.md @@ -14,7 +14,7 @@ build with GitHub Actions simply by pushing to GitHub * pull requests trigger image building without pushing to DockerHub ``` -git clone https://github.com/UW-ESS-DS/mlgeo-image +git clone https://github.com/UW-MLGEO/mlgeo-image cd MLGeo-image #git checkout dev # make sure dev branch is up-to-date with master From 267ffada32b749aa92a916a640ffe1b4a9af4573 Mon Sep 17 00:00:00 2001 From: Marine Denolle Date: Tue, 24 Sep 2024 17:55:54 -0700 Subject: [PATCH 50/50] removing ESS-DS .. hopefully --- README.md | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/README.md b/README.md index 03f1c6f..37c7cf6 100644 --- a/README.md +++ b/README.md @@ -1,10 +1,10 @@ -# UW-ESS-DS MLGeo-image JupyterHub Image Builder +# UW-MLGEO MLGeo-image JupyterHub Image Builder This repository builds a [JupyterHub](https://jupyter.org/hub) environment with JupyterHub [GitHub Actions CI](https://github.com/jupyterhub/repo2docker-action) [![Action Status](https://github.com/UW-MLGEO/MLGeo-image/workflows/CI/badge.svg)](https://github.com/UW-MLGEO/MLGeo-image/actions) [![Docker Pulls](https://img.shields.io/docker/pulls/uwessds/mlgeo-image)](https://hub.docker.com/r/uwessds/mlgeo-image/tags) -[![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-ESS-DS/MLGeo-image/main?urlpath=lab) +[![BinderHub](https://mybinder.org/badge_logo.svg)](https://mybinder.org/v2/gh/UW-MLGEO/MLGeo-image/main?urlpath=lab) https://hub.docker.com/r/uwessds/mlgeo-image/tags