fix: Update CI test paths to enable merge queue validation (#173)

* test: Add test-merge-queue branch to workflow triggers

This enables testing merge queue functionality without affecting main branch.
Workflows modified:
- validate.yml
- claude-code-test.yml
- cla.yml

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* test: Second test PR for merge queue validation

* test: First test PR for merge queue validation (#172)

* fix: Update CI test paths and enable merge queue validation

Changes:
- Fix claude-code-test.yml paths from .claude/commands/ to .claude/skills/
  (generator now outputs to skills/ directory)
- Remove test-merge-queue branch references from workflow triggers
- Remove temporary test files

This fix enables the merge queue to properly validate PRs before merging.
The CI tests were previously passing on PRs because they skip actual tests,
but would fail in the merge queue due to incorrect paths.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: Update CI test paths for skill directory structure

The test workflow expected flat skill files but the generator creates
skill directories. Updated all path checks from `.claude/skills/X.md`
to `.claude/skills/X/SKILL.md` format.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

* fix: Use --dangerously-skip-permissions instead of --yes for Claude CLI

The --yes flag doesn't exist in the Claude CLI. The correct flag for
bypassing permission prompts in CI is --dangerously-skip-permissions.

Co-Authored-By: Claude Opus 4.5 <noreply@anthropic.com>

---------

Co-authored-by: Claude Opus 4.5 <noreply@anthropic.com>

Author: ncrmro

.github/workflows/claude-code-test.yml

@@ -82,20 +82,20 @@ jobs:
 
           # Validate generated commands exist
           echo "Checking generated commands..."
-          ls -la test_project/.claude/commands/
+          ls -la test_project/.claude/skills/
 
-          # Verify command files exist
-          test -f test_project/.claude/commands/fruits.identify.md || (echo "Missing fruits.identify.md" && exit 1)
-          test -f test_project/.claude/commands/fruits.classify.md || (echo "Missing fruits.classify.md" && exit 1)
+          # Verify command files exist (skills are directories with SKILL.md)
+          test -f test_project/.claude/skills/fruits.identify/SKILL.md || (echo "Missing fruits.identify/SKILL.md" && exit 1)
+          test -f test_project/.claude/skills/fruits.classify/SKILL.md || (echo "Missing fruits.classify/SKILL.md" && exit 1)
 
           # Verify command content
-          grep -q "# fruits.identify" test_project/.claude/commands/fruits.identify.md
-          grep -q "raw_items" test_project/.claude/commands/fruits.identify.md
-          grep -q "identified_fruits.md" test_project/.claude/commands/fruits.identify.md
+          grep -q "# fruits.identify" test_project/.claude/skills/fruits.identify/SKILL.md
+          grep -q "raw_items" test_project/.claude/skills/fruits.identify/SKILL.md
+          grep -q "identified_fruits.md" test_project/.claude/skills/fruits.identify/SKILL.md
 
-          grep -q "# fruits.classify" test_project/.claude/commands/fruits.classify.md
-          grep -q "identified_fruits.md" test_project/.claude/commands/fruits.classify.md
-          grep -q "classified_fruits.md" test_project/.claude/commands/fruits.classify.md
+          grep -q "# fruits.classify" test_project/.claude/skills/fruits.classify/SKILL.md
+          grep -q "identified_fruits.md" test_project/.claude/skills/fruits.classify/SKILL.md
+          grep -q "classified_fruits.md" test_project/.claude/skills/fruits.classify/SKILL.md
 
           echo "Command generation validated successfully!"
 
@@ -173,7 +173,7 @@ jobs:
 
           echo "Fresh test project setup complete"
           echo "Available commands:"
-          ls -la test_project/.claude/commands/
+          ls -la test_project/.claude/skills/
 
       # STEP 1: Use /deepwork_jobs.define to CREATE the fruits job
       - name: Create job with /deepwork_jobs.define
@@ -184,7 +184,7 @@ jobs:
           echo "=== Running /deepwork_jobs.define to create fruits job ==="
 
           # Provide detailed, deterministic instructions for creating the job
-          claude --yes --print "/deepwork_jobs.define" <<'PROMPT_EOF'
+          claude --dangerously-skip-permissions --print "/deepwork_jobs.define" <<'PROMPT_EOF'
           I want to create a simple job called "fruits" for identifying and classifying fruits.
 
           Here are the EXACT specifications - please create the job.yml with these exact details:
@@ -233,7 +233,7 @@ jobs:
         run: |
           echo "=== Running /deepwork_jobs.implement to generate step instructions ==="
 
-          claude --yes --print "/deepwork_jobs.implement" <<'PROMPT_EOF'
+          claude --dangerously-skip-permissions --print "/deepwork_jobs.implement" <<'PROMPT_EOF'
           Please implement the "fruits" job that was just defined.
 
           For the identify step, create instructions that:
@@ -270,9 +270,9 @@ jobs:
           uv run deepwork sync --path test_project
 
           echo "=== Checking generated commands ==="
-          ls -la test_project/.claude/commands/
+          ls -la test_project/.claude/skills/
 
-          if [ -f "test_project/.claude/commands/fruits.identify.md" ] && [ -f "test_project/.claude/commands/fruits.classify.md" ]; then
+          if [ -f "test_project/.claude/skills/fruits.identify/SKILL.md" ] && [ -f "test_project/.claude/skills/fruits.classify/SKILL.md" ]; then
             echo "SUCCESS: Slash commands generated"
           else
             echo "ERROR: Slash commands were not generated"
@@ -287,7 +287,7 @@ jobs:
         run: |
           echo "=== Running /fruits.identify with test input ==="
 
-          claude --yes --print "/fruits.identify" <<'PROMPT_EOF'
+          claude --dangerously-skip-permissions --print "/fruits.identify" <<'PROMPT_EOF'
           raw_items: apple, car, banana, chair, orange, table, mango, laptop, grape, bicycle
           PROMPT_EOF
 
@@ -309,7 +309,7 @@ jobs:
         run: |
           echo "=== Running /fruits.classify ==="
 
-          claude --yes --print "/fruits.classify"
+          claude --dangerously-skip-permissions --print "/fruits.classify"
 
           # Verify output was created
           if [ -f "classified_fruits.md" ]; then
@@ -368,7 +368,7 @@ jobs:
           name: claude-code-e2e-outputs
           path: |
             test_project/.deepwork/jobs/fruits/
-            test_project/.claude/commands/fruits.*.md
+            test_project/.claude/skills/fruits.*/SKILL.md
             test_project/identified_fruits.md
             test_project/classified_fruits.md
           retention-days: 7