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CI: update checkout action to v5
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.github/workflows/build-push-image.yml

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id: extract_branch
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- name: Check out Yoda repository
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uses: actions/checkout@v3
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uses: actions/checkout@v5
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with:
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path: yoda
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repository: UtrechtUniversity/yoda

.github/workflows/codeql-analysis.yml

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steps:
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- name: Checkout repository
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uses: actions/checkout@v3
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uses: actions/checkout@v5
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# Initializes the CodeQL tools for scanning.
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- name: Initialize CodeQL

.github/workflows/lint-test.yml

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os: [ubuntu-24.04]
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python-version: ['3.9', '3.10', '3.11', '3.12']
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steps:
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- uses: actions/checkout@v3
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- uses: actions/checkout@v5
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- name: Set up Python
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uses: actions/setup-python@v4

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