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List of DE notebook tweaks #1611

@bobular

Description

@bobular
  • when showing "(only option)" in InputVariables picker, show the "entity > variable" like in the other cells when (fixed)
  • see if we can display "entity > variable" in the popover button display label too (otheriwse "Gene" can be ambiguous)
  • hide human inputs for plasmo etc? (human may be causing a back end error on plasmodb)
  • bring back the XY-based mouse-over/tooltip nearest point mechanism
  • maybe a snackbar after subsetting change to remind user to resubmit computes?
  • bigger dots on PCA
  • not front-end, but are "scientific format" numbers represented correctly on the WDK side? - not sorting correctly in the results table,
  • select sense counts by default (may need wrangling (display order or featured var?) and some front end work)
  • while wrangling, make label the default/featured/top-rank sample variable
  • improve normalisation (Bob see Claude chat link from Kathryn Slack DM)
  • is "you may return later" accurate advice? (computation submit button)
    • we could document that "Get Answer" is the only current way to save the analysis configuration
    • or we could implement local/browser state storage
  • back end bug in vectorbase https://beta.vectorbase.org/vectorbase.beta/app/search/transcript/GenesByRNASeqEvidence#GenesByRNASeqaaegLVP_AGWG_Giraud_Mosquito_bacteria_2021_ebi_rnaSeq_RSRCDESeq PCA plot visualization error below (DESeq compute also fails)
Caused by: java.lang.IllegalStateException: Computed row entity ID 'Enterobacteriaceae_L4_larvae_rep1 does not match expected ID Enterobacteriaceae_adults_rep1

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