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DESCRIPTION
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Package: SeuratExplorer
Title: An 'Shiny' App for Exploring scRNA-seq Data Processed in 'Seurat'
Version: 0.1.3
Authors@R:
person("Yongchao", "Zhang", , "zhangyongchao@nibs.ac.cn", role = c("aut", "cre"),
comment = c("https://github.com/fentouxungui"))
Description: A simple, one-command package which runs an interactive dashboard capable of common visualizations for single cell RNA-seq. 'SeuratExplorer' requires a processed 'Seurat' object, which is saved as 'rds' or 'qs2' file.
License: GPL (>= 3)
URL: https://CRAN.R-project.org/package=SeuratExplorer, https://github.com/fentouxungui/SeuratExplorer
BugReports: https://github.com/fentouxungui/SeuratExplorer/issues
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
Imports:
utils,
tools,
stats,
methods,
Seurat (>= 5.4.0),
SeuratObject (>= 5.3.0),
ggplot2 (>= 4.0.1),
shinydashboard,
shinydashboardPlus,
DT,
shinycssloaders,
colourpicker,
shinyWidgets,
scales,
shinyjqui,
shinyBS,
ggalluvial,
dplyr,
qs2,
circlize,
reshape2,
knitr,
markdown
Depends:
R (>= 4.1.0),
shiny
Suggests:
ComplexHeatmap,
patchwork (>= 1.3.2),
presto,
MAST,
limma,
DESeq2,
Signac
Remotes:
bioc::release/ComplexHeatmap,
github::immunogenomics/presto,
bioc::release/MAST,
bioc::release/limma,
bioc::release/DESeq2
LazyData: true