README.md

Phyloproteomic-Companion-Analysis

Companion files used in the collection, creation, and analysis of data.

Prerequisites

1. You will need an input file to use
2. nodejs
3. yarn or npm

Getting Started

$ git clone https://github.com/FriedLabJHU/Phyloproteomic-Companion-Analysis.git

Add your source file to the repository root

yarn install; inputFile=file.tsv yarn start; OR npm install; inputFile=file.tsv npm start

Environment Variables

Variable	Default	Description	Required	Example
inputFile		Input file name to use	true	inputFile=input.tsv yarn start;
outputFile	output.tsv	Output file name to use		outputFile=output.tsv yarn start;
browsers	10	Number of browser tabs to use		browsers=15 yarn start;
maxQueries	[number of rows in input file]	Number rows to check		maxQueries=100 yarn start;
headless	true	Should the browser run as headless		headless=false yarn start;

Example

inputFile=bacteria_to_analyze.tsv outputFile=output.tsv maxQueries=50 headless=true browsers=25 yarn start;