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Merge branch 'feature/retractionAspect'
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‎scholia/app/templates/retraction-index.html‎

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{% extends "base.html" %}
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{% set aspect = "retraction-index" %}
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{% block title %}Retractions - Scholia{% endblock %}
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{% block in_ready %}
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{{ sparql_to_iframe('retractions-per-year') }}
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{{ sparql_to_table('most-cited-retracted-works') }}
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{{ sparql_to_table('authors_with_many_retractions') }}
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{{ sparql_to_table('venues_with_many_retractions') }}
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{{ sparql_to_table('statements-with-retracted-references') }}
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{% endblock %}
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{% block page_content %}
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<h1>Retractions</h1>
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<h2 id="retractions-per-year">Retractions per year</h2>
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<div class="embed-responsive embed-responsive-16by9">
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<iframe class="embed-responsive-item" id="retractions-per-year-iframe"></iframe>
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</div>
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<h2 id="most-cited-retracted-works">Most cited retracted works</h2>
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<table class="table table-hover" id="most-cited-retracted-works-table"></table>
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<h2 id="authors_with_many_retractions">Authors with the most retractions</h2>
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<table class="table table-hover" id="authors_with_many_retractions-table"></table>
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<h2 id="venues_with_many_retractions">Venues with the most retractions</h2>
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<table class="table table-hover" id="venues_with_many_retractions-table"></table>
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<h2 id="statements-with-retracted-references">Wikidata statements citing retracted references</h2>
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<table class="table table-hover" id="statements-with-retracted-references-table"></table>
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{% endblock %}
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‎scholia/app/templates/retraction-index_authors_with_many_retractions.sparql‎

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#sparql_endpoint = https://query.wikidata.org/sparql
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#sparql_endpoint_name= WDQS&nbsp;main
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#sparql_editurl = https://query.wikidata.org/#
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#sparql_embedurl = https://query.wikidata.org/embed.html#
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SELECT ?author ?authorLabel ?count WHERE {
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hint:Query hint:optimizer "None" .
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SERVICE wdsubgraph:scholarly_articles {
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SELECT ?author (COUNT(DISTINCT ?work) AS ?count) WHERE {
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{ ?work wdt:P31 wd:Q45182324 . } UNION
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{ ?work wdt:P793 wd:Q7316896 . } UNION
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{ ?work wdt:P5824 [] . }
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?work wdt:P50 ?author .
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} GROUP BY ?author ?authorLabel
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ORDER BY DESC(?count)
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LIMIT 100
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}
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SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],mul,en". }
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} ORDER BY DESC(?count)

‎scholia/app/templates/retraction-index_most-cited-retracted-works.sparql‎

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#sparql_endpoint = https://query-scholarly.wikidata.org/sparql
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#sparql_endpoint_name= WDQS&nbsp;scholarly
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#sparql_editurl = https://query-scholarly.wikidata.org/#
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#sparql_embedurl = https://query-scholarly.wikidata.org/embed.html#
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SELECT ?work ?workLabel (CONCAT("../retraction/", SUBSTR(STR(?work), 32)) AS ?workUrl)
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?count WITH {
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SELECT ?work (COUNT(DISTINCT ?citation) AS ?count) WHERE {
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hint:Query hint:optimizer "None" .
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{ ?work wdt:P31 wd:Q45182324 . } UNION
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{ ?work wdt:P793 wd:Q7316896 . } UNION
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{ ?work wdt:P5824 [] . }
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{ SERVICE wdsubgraph:wikidata_main { ?citation wdt:P2860 ?work . } } UNION
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{ ?citation wdt:P2860 ?work . }
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} GROUP BY ?work ORDER BY DESC(?count) LIMIT 100
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} AS %RETRACTIONS WHERE {
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INCLUDE %RETRACTIONS
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SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],mul,en". }
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} ORDER BY DESC(?count)

‎scholia/app/templates/retraction-index_retractions-per-year.sparql‎

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#sparql_endpoint = https://query-scholarly.wikidata.org/sparql
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#sparql_endpoint_name= WDQS&nbsp;scholarly
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#sparql_editurl = https://query-scholarly.wikidata.org/#
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#sparql_embedurl = https://query-scholarly.wikidata.org/embed.html#
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#defaultView:BarChart
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SELECT
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(STR(?year_) AS ?year)
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(SUM(?count_) AS ?count)
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WHERE {
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{
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SELECT
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?year_
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(COUNT(DISTINCT ?retractedArticle) AS ?count_)
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WHERE {
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?retractedArticle p:P31 ?isRetractedPaperStatement .
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?isRetractedPaperStatement ps:P31 wd:Q45182324 .
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?isRetractedPaperStatement pq:P580 ?date .
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BIND(YEAR(?date) AS ?year_)
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}
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GROUP BY ?year_
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}
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}
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GROUP BY ?year_
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ORDER BY DESC(?year_)

‎scholia/app/templates/retraction-index_statements-with-retracted-references.sparql‎

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SELECT DISTINCT ?entity ?entityLabel ?entityUrl
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?property ?propertyLabel ?value ?valueLabel
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?retracted ?retractedLabel
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(CONCAT("/retraction/", SUBSTR(STR(?retracted), 32)) AS ?retractedUrl)
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WITH {
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SELECT DISTINCT ?entity ?p ?statement ?retracted WHERE {
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?retracted wdt:P31 wd:Q45182324 .
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?entity ?p ?statement .
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?statement prov:wasDerivedFrom / pr:P248 ?retracted .
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}
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} AS %STATEMENTS WHERE {
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INCLUDE %STATEMENTS
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?p ^wikibase:claim ?property .
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?statement ?ps ?value .
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?ps ^wikibase:statementProperty ?property .
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BIND(?statement AS ?entityUrl)
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SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],en". }
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}

‎scholia/app/templates/retraction-index_venues_with_many_retractions.sparql‎

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#sparql_endpoint = https://query.wikidata.org/sparql
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#sparql_endpoint_name= WDQS&nbsp;main
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#sparql_editurl = https://query.wikidata.org/#
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#sparql_embedurl = https://query.wikidata.org/embed.html#
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SELECT
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?works
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?venue ?venueLabel
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(CONCAT("../venue/", SUBSTR(STR(?venue), 32)) AS ?venueUrl)
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?venueDescription
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WHERE {
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SERVICE wdsubgraph:scholarly_articles {
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{
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SELECT
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(COUNT(?work) AS ?works)
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?venue
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WHERE {
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?work wdt:P31 wd:Q45182324 ;
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wdt:P1433 ?venue .
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}
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GROUP BY ?venue
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ORDER BY DESC(?works)
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LIMIT 200
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}
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}
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SERVICE wikibase:label { bd:serviceParam wikibase:language "[AUTO_LANGUAGE],mul,en". }
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}
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ORDER BY DESC(?works)

‎scholia/app/templates/retraction.html‎

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{% extends "base.html" %}
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{% set aspect = "retraction" %}
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{% block title %}Retractions - Scholia{% endblock %}
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{% block in_ready %}
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{{ sparql_to_table_post('data') }}
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{{ sparql_to_table('list-of-authors') }}
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{{ sparql_to_iframe('citations-per-year') }}
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{{ sparql_to_table('statements-with-retracted-references') }}
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{% endblock %}
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{% block page_content %}
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<h1 id="h1">Retraction</h1>
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<table class="table table-hover" id="data-table"></table>
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<h2 id="list-of-authors">List of authors</h2>
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<table class="table table-hover" id="list-of-authors-table"></table>
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<h2 id="citations-per-year">Citations per year</h2>
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This plot shows the number of citations to the retracted article over time.
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If the date of retraction is known, it colors which citations have been made
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before and after the retraction.
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<div class="embed-responsive embed-responsive-16by9">
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<iframe class="embed-responsive-item" id="citations-per-year-iframe"></iframe>
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</div>
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<h2 id="statements-with-retracted-references">Wikidata statements citing retracted references</h2>
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<table class="table table-hover" id="statements-with-retracted-references-table"></table>
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{% endblock %}
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‎scholia/app/templates/retraction_citations-per-year.sparql‎

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#sparql_endpoint = https://query-scholarly.wikidata.org/sparql
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#sparql_endpoint_name= WDQS&nbsp;main
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#sparql_editurl = https://query-scholarly.wikidata.org/#
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#sparql_embedurl = https://query-scholarly.wikidata.org/embed.html#
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#defaultView:BarChart
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PREFIX target: <http://www.wikidata.org/entity/{{ q }}>
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SELECT
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(STR(?year_) AS ?year)
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(SUM(?count_) AS ?count)
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?kind
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WHERE {
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{
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SELECT
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?year_
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(COUNT(DISTINCT ?citing_work) AS ?count_)
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?kind2
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WHERE {
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?citing_work wdt:P2860 target: .
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# Year of citation
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?citing_work wdt:P577 ?date .
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BIND(YEAR(?date) AS ?year_)
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BIND(xsd:date(?date) AS ?pubDate_)
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target: p:P31 ?isRetractedPaperStatement .
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?isRetractedPaperStatement ps:P31 wd:Q45182324 .
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?isRetractedPaperStatement pq:P580 ?retractionDate
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BIND(xsd:date(?retractionDate) AS ?retractionDate_)
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BIND (IF (?retractionDate_ > ?pubDate_,
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"before retraction", "after retraction") AS ?kind2)
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}
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GROUP BY ?year_ ?kind2
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}
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UNION
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{
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SELECT
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?year_
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(COUNT(DISTINCT ?citing_work) AS ?count_)
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?kind2
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WHERE {
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?citing_work wdt:P2860 target: .
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# Year of citation
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?citing_work wdt:P577 ?date .
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BIND(YEAR(?date) AS ?year_)
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BIND(xsd:date(?date) AS ?pubDate_)
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MINUS { target: p:P31 / pq:P580 ?retractionDate }
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}
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GROUP BY ?year_ ?kind2
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}
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BIND(IF(BOUND(?kind2), ?kind2, "_") AS ?kind)
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}
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GROUP BY ?year_ ?kind
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ORDER BY DESC(?year_)

‎scholia/app/templates/retraction_data.sparql‎

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PREFIX target: <http://www.wikidata.org/entity/{{ q }}>
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SELECT DISTINCT ?description ?value ?valueUrl
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WHERE {
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BIND(target: AS ?work)
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{
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BIND(1 AS ?order)
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BIND("Title" AS ?description)
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?work wdt:P1476 ?value .
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}
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UNION
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{
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SELECT
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(2 AS ?order)
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("Reviewers" AS ?description)
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(GROUP_CONCAT(?value_; separator=", ") AS ?value)
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(CONCAT("../authors/", GROUP_CONCAT(?q; separator=",")) AS ?valueUrl)
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{
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BIND(1 AS ?dummy)
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target: wdt:P4032 ?iri .
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BIND(SUBSTR(STR(?iri), 32) AS ?q)
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?iri rdfs:label ?value_string .
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FILTER (LANG(?value_string) = 'en')
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BIND(COALESCE(?value_string, ?q) AS ?value_)
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}
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GROUP BY ?dummy
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}
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UNION
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{
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BIND(3 AS ?order)
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BIND("Published in" AS ?description)
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?work wdt:P1433 ?iri .
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BIND(SUBSTR(STR(?iri), 32) AS ?q)
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?iri rdfs:label ?value_string .
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FILTER (LANG(?value_string) = 'en')
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BIND(COALESCE(?value_string, ?q) AS ?value)
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BIND(CONCAT("../venue/", ?q) AS ?valueUrl)
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}
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UNION
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{
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BIND(4 AS ?order)
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BIND("Publication date" AS ?description)
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?work p:P577 / psv:P577 ?publication_date_value .
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?publication_date_value wikibase:timePrecision ?time_precision ;
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wikibase:timeValue ?publication_date .
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BIND(IF(?time_precision = 9, YEAR(?publication_date), xsd:date(?publication_date)) AS ?value)
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}
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UNION
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{
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BIND(5 AS ?order)
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BIND("Retraction date" AS ?description)
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?work p:P31 ?isRetractedPaperStatement .
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?isRetractedPaperStatement ps:P31 wd:Q45182324 .
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?isRetractedPaperStatement pq:P580 ?retraction_date_value .
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BIND(xsd:date(?retraction_date_value) AS ?value)
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}
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UNION
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{
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BIND(6 AS ?order)
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BIND("Publisher" AS ?description)
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?work wdt:P123 ?iri .
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BIND(SUBSTR(STR(?iri), 32) AS ?q)
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?iri rdfs:label ?value_string .
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FILTER (LANG(?value_string) = 'en')
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BIND(COALESCE(?value_string, ?q) AS ?value)
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BIND(CONCAT("../publisher/", ?q) AS ?valueUrl)
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}
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UNION
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{
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BIND(7 AS ?order)
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BIND("DOI" AS ?description)
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?work wdt:P356 ?valueUrl_ .
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BIND(CONCAT("https://doi.org/", ENCODE_FOR_URI(?valueUrl_)) AS ?valueUrl)
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BIND(CONCAT(?valueUrl_, " ↗") AS ?value)
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}
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UNION
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{
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BIND(8 AS ?order)
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BIND("🛑 Retracted by" AS ?description)
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?work wdt:P5824 ?iri .
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BIND(SUBSTR(STR(?iri), 32) AS ?q)
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?iri rdfs:label ?value_string .
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FILTER (LANG(?value_string) = 'en')
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BIND(COALESCE(?value_string, ?q) AS ?value)
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BIND(CONCAT("../work/", ?q) AS ?valueUrl)
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}
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UNION
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{
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BIND(9 AS ?order)
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BIND("⚠️ Cites retracted article" AS ?description)
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{ ?work wdt:P2860 ?retracted . ?retracted wdt:P31 wd:Q45182324 . }
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UNION
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{ ?work wdt:P2860 ?retracted . ?retracted wdt:P793 wd:Q7316896 . }
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UNION
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{ ?work wdt:P2860 ?retracted . ?retracted wdt:P5824 [] . }
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?retracted rdfs:label ?value_string .
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FILTER (LANG(?value_string) = 'en')
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BIND(SUBSTR(STR(?retracted), 32) AS ?q)
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BIND(COALESCE(?value_string, ?q) AS ?value)
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BIND(CONCAT("../work/", ?q) AS ?valueUrl)
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}
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}
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ORDER BY ?order

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