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app.py
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from flask import Flask
from flask import render_template
from flask import redirect, url_for
from flask_bootstrap import Bootstrap
from flask import request
import pymysql
app = Flask(__name__)
bootstrap = Bootstrap(app)
# from flask import send_file
@app.route('/')
def index():
conn = getConnection()
cur = conn.cursor()
gene_data = "SELECT Loci FROM hpgdb_main"
cur.execute(gene_data)
gene_data_list = cur.fetchall()
cur = conn.cursor()
drug_data = "SELECT drugbank_Name FROM drugbank"
cur.execute(drug_data)
drug_data_list = cur.fetchall()
cur = conn.cursor()
target_data = "SELECT target_name FROM drugbank_target"
cur.execute(target_data)
target_data_list = cur.fetchall()
cur = conn.cursor()
sideeffects_data = "SELECT sideeffect_link FROM sider_effect"
cur.execute(sideeffects_data)
sideeffects_data_list = cur.fetchall()
cur = conn.cursor()
pathway_data = "SELECT pathway_name FROM pathway_table"
cur.execute(pathway_data)
pathway_data_list = cur.fetchall()
cur = conn.cursor()
disease_data = "SELECT kegg_disease_link FROM kegg_disease"
cur.execute(disease_data)
disease_data_list = cur.fetchall()
cur.close()
conn.close()
context = {'drug': len(drug_data_list), 'target': len(target_data_list), 'side_effect': len(sideeffects_data_list), 'pathway': len(pathway_data_list), 'disease': len(disease_data_list), 'gene': len(gene_data_list)}
return render_template('index.html',**context,a="https://apps.bdimg.com/libs/jquery/2.1.4/jquery.min.js",b="https://code.highcharts.com/highcharts.js")
def getConnection():
conn = pymysql.connect(host='127.0.0.1', user='root', password='421421', db='paindatabase', charset='utf8')
return conn
@app.route('/drug')
def drug():
conn=getConnection()
cur = conn.cursor()
sql_kegg_drug_drugbank = "SELECT drugbank_id FROM drugbank_keggdrug"
cur.execute(sql_kegg_drug_drugbank)
drugbank_id_list = cur.fetchall()
#print("drugbank_id_list",drugbank_id_list)
drugbank_cur=conn.cursor()
drug_info_list=[]
for drugbank_id in drugbank_id_list:
if len(drugbank_id)>0:
drugbank_id=list(drugbank_id)[0]
sql_drugbank="SELECT drugbank_id,drugbank_Name,Description FROM drugbank WHERE drugbank_id = '%s'" %drugbank_id
drugbank_cur.execute(sql_drugbank)
item=drugbank_cur.fetchone()
drug_info_list.append(item)
drugbank_cur.close()
cur.close()
conn.close()
#print("drug_info_list:",drug_info_list)
return render_template('drug.html',drug_info_list=drug_info_list)
@app.errorhandler(404)
def not_found(error):
return render_template('404.html')
@app.route('/drugInfo',methods=["get","post"])
def drugInfo():
req=request.args
drugbank_id=req.get("drugbank_id")
# drugbank_id=drugbank_id
# print("drugbank_id:",drugbank_id)
conn=getConnection()
cur = conn.cursor()
sql_drug = "SELECT * FROM drugbank WHERE drugbank_id = '%s'" %drugbank_id
cur.execute(sql_drug)
drugbank_info_tuple=cur.fetchone()
# print("drugbank_info_tuple:",drugbank_info_tuple)
kegg_id=drugbank_info_tuple[10]
# print("kegg_id:",kegg_id)
#根据keggid获取kegg表数据
cur3 = conn.cursor()
sql_kegg_drug = "SELECT * FROM kegg_drug WHERE kegg_id = '%s'" %kegg_id
cur3.execute(sql_kegg_drug)
kegg_drug_info_tuple=cur3.fetchone()
# print("kegg_drug_info_tuple:",kegg_drug_info_tuple)
if kegg_drug_info_tuple==None:
kegg_drug_info_tuple=[]
for item_i in range(21):
kegg_drug_info_tuple.append("None")
#查询pathway
cur_pathway=conn.cursor()
sql_pathway="SELECT * FROM pathway_table WHERE drugbank_id = '%s'" %drugbank_id
cur_pathway.execute(sql_pathway)
pathways=cur_pathway.fetchall()
# print("pathways:",pathways)
#查询drugbank target
cur_target=conn.cursor()
sql_target="SELECT * FROM drugbank_target WHERE drugbank_id = '%s'" %drugbank_id
cur_target.execute(sql_target)
drugbank_target=cur_target.fetchall()
####
cur_sideefect=conn.cursor()
sql_sideeffects='SELECT * FROM sider_effect WHERE sideeffect_link IN (SELECT sideeffect_link FROM sideeffect_of_sider_drug WHERE sider_drug_link IN (SELECT sider_drug_link FROM siderdrug_drugbank WHERE drugbank_id = "%s" ))'%drugbank_id
cur_sideefect.execute(sql_sideeffects)
sideeffects=cur_sideefect.fetchall()
#####
# cur_kegg_pathway=conn.cursor()
# sql_kegg_pathway=''
# print("sideeffects:",sideeffects)
# print("drugbank_target:",drugbank_target)
# print("img.........................:",kegg_drug_info_tuple[4])
# print("structureMapName:",kegg_drug_info_tuple[12])
return render_template('drugInfo.html',drugbank_info_tuple=drugbank_info_tuple
,kegg_drug_info_tuple=kegg_drug_info_tuple,pathways=pathways,
drugbank_target=drugbank_target,sideeffects=sideeffects)
"""
@app.route('/sideeffects')
def sideeffects():
conn=getConnection()
cur = conn.cursor()
sql_sideeffect = "SELECT * FROM sider_effect WHERE sideeffect_link IN (SELECT sideeffect_link FROM sideeffect_of_sider_drug WHERE sider_drug_link IN (SELECT sider_drug_link FROM siderdrug_drugbank WHERE drugbank_id IN (SELECT drugbank_id FROM drugbank_keggdrug )));"
cur.execute(sql_sideeffect)
sideeffect_names=cur.fetchall()
sideeffect_names=list(sideeffect_names)
# print("sideeffect_names:",sideeffect_names)
len_sider=len(sideeffect_names)
item3_len=int(len_sider/3)
# print(item3_len)
return render_template('sideeffects.html',sideeffect_names=sideeffect_names,item3_len=item3_len)
"""
@app.route('/sideInfo',methods=["get"])
def sideInfo():
req=request.args
sideName=req.get("sideName")
# drugbank_id=drugbank_id
# print("sideName:",sideName)
conn=getConnection()
cur = conn.cursor()
sqlSideInfo = 'SELECT * FROM sider_effect WHERE sideeffect_name = "%s"' %sideName
cur.execute(sqlSideInfo)
SideInfo=cur.fetchone()
# SideInfo=list(SideInfo)
# print("SideInfo:",SideInfo)
# print("SideInfo[0]:",SideInfo[0])
# 根据sidereffect_link 查 对应的多种副作用药物
cur_drug=conn.cursor()
sql_drug="SELECT * FROM sider_to_drug WHERE sideeffect_link='%s'" %SideInfo[0]
cur_drug.execute(sql_drug)
drugOFsider=cur_drug.fetchall()
# print("drugOFsider:",drugOFsider)
return render_template('sideInfo.html',SideInfo=SideInfo,drugOFsider=drugOFsider)
@app.route('/structureMap',methods=["get"])
def structureMap():
req=request.args
structureMapName=req.get("structureMapName")
# print("structureMapName:",structureMapName)
conn=getConnection()
cur = conn.cursor()
sqlmap = 'SELECT * FROM kegg_drug WHERE Structure_map_name = "%s"' %structureMapName
cur.execute(sqlmap)
kegg_drug=cur.fetchone()
# print("kegg_drug_info:",kegg_drug)
return render_template('structureMap.html',kegg_drug=kegg_drug)
@app.route('/keggTarget',methods=["get"])
def keggTarget():
req=request.args
Target_href=req.get("Target_href")
# print("Target_href:",Target_href)
targetInfo=[]
conn=getConnection()
if Target_href=="None" or Target_href==None:
for i in range(20):
targetInfo.append("None")
else:
cur = conn.cursor()
sql_target = 'SELECT * FROM kegg_drug_target WHERE Target_href = "%s"' %Target_href
cur.execute(sql_target)
targetInfo=cur.fetchone()
# print("targetInfo:",targetInfo)
pathwayList=[]
if Target_href==None or Target_href=="None":
for i in range(20):
pathwayList.append("None")
else:
cur2 = conn.cursor()
sql_pathway = 'SELECT * FROM target_pathway WHERE Target_href = "%s"' %Target_href
cur2.execute(sql_pathway)
pathwayList=cur2.fetchall()
diseaseList = []
if Target_href==None or Target_href=="None":
for i in range(10):
diseaseList=None
else:
cur_disease = conn.cursor()
sql = 'SELECT * FROM target_disease WHERE Target_href = "%s"' %Target_href
cur_disease.execute(sql)
diseaseList=cur_disease.fetchall()
# print("diseaseList:",diseaseList)
return render_template('targetInfo.html',targetInfo=targetInfo,pathwayList=pathwayList,diseaseList=diseaseList)
@app.route('/pathwayInfo',methods=["get"])
def pathwayInfo():
req=request.args
pathwayHsa=req.get("pathwayHsa")
# print("pathwayHsa:",pathwayHsa)
conn=getConnection()
pathwayHsaInfo=[]
if pathwayHsa!=None and pathwayHsa!="None":
cur = conn.cursor()
sql_target = 'SELECT * FROM target_pathway WHERE kegg_target_hsa = "%s"' %pathwayHsa
cur.execute(sql_target)
pathwayHsaInfo=cur.fetchone()
return render_template('pathwayHsaInfo.html',pathwayHsaInfo=pathwayHsaInfo)
@app.route('/pathway')
def pathway():
conn=getConnection()
cur = conn.cursor()
sql_target = 'SELECT * FROM target_pathway'
cur.execute(sql_target)
pathwayHsaList=cur.fetchall()
return render_template('pathwayHsaList.html',pathwayHsaList=pathwayHsaList)
@app.route('/pathwayMapOfKegg',methods=["get"])
def pathwayMapOfKegg():
req=request.args
picName=req.get("picName")
# print("picName:",picName)
return render_template('pathwayMapOfKegg.html',picName=picName)
@app.route('/targets')
def targets():
conn=getConnection()
cur = conn.cursor()
sql_target = 'SELECT * FROM drugbank_target'
cur.execute(sql_target)
drugbankTargetList=cur.fetchall()
len_list=len(drugbankTargetList)
item_len=(int)(len_list/2)
return render_template('drugbankTarget.html',drugbankTargetList=drugbankTargetList,item_len=item_len)
@app.route('/drugbankTargetInfo',methods=["get"])
def drugbankTargetInfo():
req=request.args
drugbankTarget=req.get("drugbankTarget")
# print("drugbankTarget:",drugbankTarget)
conn=getConnection()
cur = conn.cursor()
sql_target = 'SELECT * FROM drugbank_target WHERE target_name = "%s"' %drugbankTarget
cur.execute(sql_target)
drugbankTargetInfo=cur.fetchone()
return render_template('drugbankTargetInfo.html',drugbankTargetInfo=drugbankTargetInfo)
@app.route('/Disease')
def Disease():
conn=getConnection()
cur = conn.cursor()
sql = 'SELECT * FROM kegg_disease'
cur.execute(sql)
diseaseList=cur.fetchall()
return render_template('diseases.html',diseaseList=diseaseList)
@app.route('/diseaseInfo',methods=["get"])
@app.route('/diseaseInfo',methods=["get"])
def diseaseInfo():
req=request.args
keggDiseaseId=req.get("keggDiseaseId")
# print("keggDiseaseId:",keggDiseaseId)
conn=getConnection()
cur = conn.cursor()
sql = 'SELECT * FROM kegg_disease WHERE kegg_disease_id = "%s"' %keggDiseaseId
cur.execute(sql)
diseaseInfo=cur.fetchone()
#查基因信息
cur_genen=conn.cursor()
sql_gene='SELECT * FROM kegg_disease_gene WHERE kegg_id = "%s"' %keggDiseaseId
cur_genen.execute(sql_gene)
geneInfoList=cur_genen.fetchall()
return render_template('diseaseInfo.html',diseaseInfo=diseaseInfo,geneInfoList=geneInfoList)
@app.route('/diseasePathway',methods=["get"])
def diseasePathway():
req=request.args
diseasePathway=req.get("diseasePathway")
# print("diseasePathway:",diseasePathway)
conn=getConnection()
cur = conn.cursor()
sql = 'SELECT * FROM kegg_disease WHERE kegg_disease_pathway_id = "%s"' % diseasePathway
cur.execute(sql)
diseasePathwayInfo = cur.fetchone()
return render_template('diseases.html',diseasePathwayInfo=diseasePathwayInfo)
@app.route('/Gene')
def Gene():
conn=getConnection()
cur = conn.cursor()
sql_hpgdb = "SELECT Loci FROM hpgdb_main"
cur.execute(sql_hpgdb)
hpgdb_list = cur.fetchall()
#print("hpgdb_list",hpgdb_list)
hpgdb_cur=conn.cursor()
hpgdb_info_list=[]
for id in hpgdb_list:
if len(id)>0:
id=list(id)[0]
sql_hpgdb="SELECT Loci,Variants,Alleles,Phenotype,Link,Description,NUM FROM hpgdb_main WHERE Loci = '%s'" %id
hpgdb_cur.execute(sql_hpgdb)
item=hpgdb_cur.fetchone()
hpgdb_info_list.append(item)
hpgdb_cur.close()
cur.close()
conn.close()
# print(hpgdb_info_list)
return render_template('Gene.html', hpgdb_info_list=hpgdb_info_list)
# print("hpgdb_info_list:",hpgdb_info_list)
@app.route('/gene_info', methods=['GET','POST'])
def Gene_info():
num=request.args.get("num")
# print(num)
return render_template('%s.html' % num)
# @app.route('/PainDatabase/drugbankInfomation?drugbank_id=<drugbank_id>')
def drugbankInfomation(drugbank_id):
# drugbank_id=drugbank_id
# print("drugbank_id:",drugbank_id)
conn=getConnection()
cur = conn.cursor()
sql_drug = "SELECT * FROM drugbank WHERE drugbank_id = '%s'" %drugbank_id
cur.execute(sql_drug)
drugbank_info_tuple=cur.fetchone()
# print("drugbank_info_tuple:",drugbank_info_tuple)
kegg_id=drugbank_info_tuple[10]
# print("kegg_id:",kegg_id)
# 根据keggid获取kegg表数据
cur3 = conn.cursor()
sql_kegg_drug = "SELECT * FROM kegg_drug WHERE kegg_id = '%s'" %kegg_id
cur3.execute(sql_kegg_drug)
kegg_drug_info_tuple=cur3.fetchone()
# print("kegg_drug_info_tuple:",kegg_drug_info_tuple)
if kegg_drug_info_tuple==None:
kegg_drug_info_tuple=[]
for item_i in range(21):
kegg_drug_info_tuple.append("None")
# 查询pathway
cur_pathway=conn.cursor()
sql_pathway="SELECT * FROM pathway_table WHERE drugbank_id = '%s'" %drugbank_id
cur_pathway.execute(sql_pathway)
pathways=cur_pathway.fetchall()
# print("pathways:",pathways)
# 查询drugbank target
cur_target=conn.cursor()
sql_target="SELECT * FROM drugbank_target WHERE drugbank_id = '%s'" %drugbank_id
cur_target.execute(sql_target)
drugbank_target=cur_target.fetchall()
####
cur_sideefect=conn.cursor()
sql_sideeffects='SELECT * FROM sider_effect WHERE sideeffect_link IN (SELECT sideeffect_link FROM sideeffect_of_sider_drug WHERE sider_drug_link IN (SELECT sider_drug_link FROM siderdrug_drugbank WHERE drugbank_id = "%s" ))'%drugbank_id
cur_sideefect.execute(sql_sideeffects)
sideeffects=cur_sideefect.fetchall()
#####
# cur_kegg_pathway=conn.cursor()
# sql_kegg_pathway=''
# print("sideeffects:",sideeffects)
# print("drugbank_target:",drugbank_target)
# print("img.........................:",kegg_drug_info_tuple[4])
# print("structureMapName:",kegg_drug_info_tuple[12])
return render_template('drugInfo.html',drugbank_info_tuple=drugbank_info_tuple
,kegg_drug_info_tuple=kegg_drug_info_tuple,pathways=pathways,
drugbank_target=drugbank_target,sideeffects=sideeffects)
@app.route('/searchForSideName?sideName=<sideName>')
def searchForSideName(sideName):
# print("sideName:",sideName)
conn = getConnection()
cur = conn.cursor()
sqlSideInfo = 'SELECT * FROM sider_effect WHERE sideeffect_name = "%s"' %sideName
cur.execute(sqlSideInfo)
SideInfo=cur.fetchone()
# SideInfo=list(SideInfo)
# print("SideInfo:",SideInfo)
# print("SideInfo[0]:",SideInfo[0])
# 根据sidereffect_link 查 对应的多种副作用药物
cur_drug=conn.cursor()
sql_drug="SELECT * FROM sider_to_drug WHERE sideeffect_link='%s'" %SideInfo[0]
cur_drug.execute(sql_drug)
drugOFsider=cur_drug.fetchall()
# print("drugOFsider:",drugOFsider)
return render_template('sideInfo.html',SideInfo=SideInfo,drugOFsider=drugOFsider)
@app.route('/searchForTargetName?target_name=<target_name>')
def searchForTargetName(target_name):
drugbankTarget=target_name
# print("drugbankTarget:",drugbankTarget)
conn=getConnection()
cur = conn.cursor()
sql_target = 'SELECT * FROM drugbank_target WHERE target_name = "%s"' %drugbankTarget
cur.execute(sql_target)
drugbankTargetInfo=cur.fetchone()
return render_template('drugbankTargetInfo.html',drugbankTargetInfo=drugbankTargetInfo)
@app.route('/searchForKeggPathway?pathwayHsa=<pathwayHsa>')
def searchForKeggPathway(pathwayHsa):
# print("pathwayHsa:",pathwayHsa)
conn=getConnection()
pathwayHsaInfo=[]
if pathwayHsa!=None and pathwayHsa!="None":
cur = conn.cursor()
sql_target = 'SELECT * FROM target_pathway WHERE kegg_target_hsa = "%s"' %pathwayHsa
cur.execute(sql_target)
pathwayHsaInfo=cur.fetchone()
return render_template('pathwayHsaInfo.html',pathwayHsaInfo=pathwayHsaInfo)
@app.route('/searchForKeggDiseaseId?keggDiseaseId=<keggDiseaseId>')
def searchForKeggDiseaseId(keggDiseaseId):
print("keggDiseaseId:",keggDiseaseId)
conn=getConnection()
cur = conn.cursor()
sql = 'SELECT * FROM kegg_disease WHERE kegg_disease_id = "%s"' %keggDiseaseId
cur.execute(sql)
diseaseInfo=cur.fetchone()
#查基因信息
cur_genen=conn.cursor()
sql_gene='SELECT * FROM kegg_disease_gene WHERE kegg_id = "%s"' %keggDiseaseId
cur_genen.execute(sql_gene)
geneInfoList=cur_genen.fetchall()
return render_template('diseaseInfo.html',diseaseInfo=diseaseInfo,geneInfoList=geneInfoList)
@app.route('/search',methods=["post","get"])
def search():
username=request.form.get("username")
# print("username:",username)
conn = getConnection()
# drugbank_id查drugbank
cur_drugbank = conn.cursor()
args='%'+username+'%'
sql_drugbank="select * from drugbank where drugbank_id LIKE '%s'" %args
cur_drugbank.execute(sql_drugbank)
drugbankInfo= cur_drugbank.fetchone()
# print("drugbankInfo:",drugbankInfo)
if drugbankInfo != None:
drugbank_id=drugbankInfo[1]
#return render_template('drugbankInfomation.html',drugbank_id=drugbank_id)
return drugbankInfomation(drugbank_id)
#drugbank_name 查找druginfo
cur_drugbank_name = conn.cursor()
sql_drugbank_name="select * from drugbank where drugbank_Name LIKE '%s'" %args
cur_drugbank_name.execute(sql_drugbank_name)
drugbankInfo2= cur_drugbank_name.fetchone()
# print("drugbankInfo2:",drugbankInfo2)
if drugbankInfo2 != None:
drugbank_id=drugbankInfo2[1]
return drugbankInfomation(drugbank_id)
# cas number 查找drugINfo
cur_cas = conn.cursor()
sql_cas="select * from drugbank where CAS_number LIKE '%s'" %args
cur_cas.execute(sql_cas)
drugbankInfo3= cur_cas.fetchone()
# print("drugbankInfo3:",drugbankInfo3)
if drugbankInfo3 != None:
drugbank_id=drugbankInfo3[1]
return drugbankInfomation(drugbank_id)
#kegg id 查找 drugINfo
cur_kegg_id = conn.cursor()
sql_kegg_id="select * from drugbank where KEGG_Drug LIKE '%s'" %args
cur_kegg_id.execute(sql_kegg_id)
drugbankInfo4= cur_kegg_id.fetchone()
# print("drugbankInfo4:",drugbankInfo4)
if drugbankInfo4 != None:
drugbank_id=drugbankInfo4[1]
return drugbankInfomation(drugbank_id)
#sideName 查找 sideInfo
cur_side_name = conn.cursor()
sql_side_name='select * from sider_effect where sideeffect_name LIKE "%s"' %args
cur_side_name.execute(sql_side_name)
sideInfo= cur_side_name.fetchone()
# print("sideInfo:",sideInfo)
if sideInfo != None:
sideName=sideInfo[1]
return redirect(url_for('searchForSideName', sideName=sideName))
# sideeffect_id 查找 sideInfo
cur_effect_link = conn.cursor()
sql_effect_link='select * from sider_effect where sideeffect_link LIKE "%s"' %args
cur_effect_link.execute(sql_effect_link)
sideInfo2= cur_effect_link.fetchone()
# print("sideInfo2:",sideInfo2)
if sideInfo2 != None:
sideName=sideInfo2[1]
return redirect(url_for('searchForSideName', sideName=sideName))
# target_name 查找 drugbankTargetInfo
cur_target_name = conn.cursor()
sql_target_name='select * from drugbank_target where target_name LIKE "%s"' %args
cur_target_name.execute(sql_target_name)
targetInfo2= cur_target_name.fetchone()
# print("targetInfo2:",targetInfo2)
if targetInfo2 != None:
target_name=targetInfo2[0]
return redirect(url_for('searchForTargetName', target_name=target_name))
# Gene_name 查找 drugbankTargetInfo
cur_Gene_name = conn.cursor()
sql_Gene_name='select * from drugbank_target where Gene_Name LIKE "%s"' %args
cur_Gene_name.execute(sql_Gene_name)
targetInfo3= cur_Gene_name.fetchone()
# print("targetInfo3:",targetInfo3)
if targetInfo3 != None:
target_name=targetInfo3[0]
return redirect(url_for('searchForTargetName', target_name=target_name))
# searchForKeggPathway 根据kegg_hsa查找pathway
cur_kegg_hsa = conn.cursor()
sql_kegg_hsa='select * from target_pathway where kegg_target_hsa LIKE "%s"' %args
cur_kegg_hsa.execute(sql_kegg_hsa)
pathwayInfo= cur_kegg_hsa.fetchone()
# print("pathwayInfo:",pathwayInfo)
if pathwayInfo != None:
pathwayHsa=pathwayInfo[0]
return redirect(url_for('searchForKeggPathway', pathwayHsa=pathwayHsa))
# searchForKeggPathway 根据 kegg_target_pathway_name 查找pathway
cur_kegg_target_pathway_name = conn.cursor()
sql_kegg_target_pathway_name='select * from target_pathway where kegg_target_pathway_name LIKE "%s"' %args
cur_kegg_target_pathway_name.execute(sql_kegg_target_pathway_name)
pathwayInfo2= cur_kegg_target_pathway_name.fetchone()
# print("pathwayInfo2:",pathwayInfo2)
if pathwayInfo2 != None:
pathwayHsa=pathwayInfo2[0]
return redirect(url_for('searchForKeggPathway', pathwayHsa=pathwayHsa))
# searchFordisease 根据 kegg_disease_id 查找disease_Info
cur_disease_id = conn.cursor()
sql_disease_id='select * from kegg_disease where kegg_disease_id LIKE "%s"' %args
cur_disease_id.execute(sql_disease_id)
diseaseInfo2= cur_disease_id.fetchone()
# print("diseaseInfo2:",diseaseInfo2)
if diseaseInfo2 != None:
keggDiseaseId=diseaseInfo2[1]
return redirect(url_for('searchForKeggDiseaseId', keggDiseaseId=keggDiseaseId))
# searchFordisease 根据 kegg_disease_Name 查找disease_Info
cur_disease_name = conn.cursor()
sql_disease_name='select * from kegg_disease where kegg_disease_name LIKE "%s"' %args
cur_disease_name.execute(sql_disease_name)
diseaseInfo3= cur_disease_name.fetchone()
# print("diseaseInfo3:",diseaseInfo3)
if diseaseInfo3 != None:
keggDiseaseId=diseaseInfo3[1]
return redirect(url_for('searchForKeggDiseaseId', keggDiseaseId=keggDiseaseId))
### searchhpgdb 根据 Variants 查找hpgdb_main
cur_hpgdb_Variants = conn.cursor()
sql_hpgdb_Variants = 'select NUM from hpgdb_main where Variants LIKE "%s"' % args
cur_hpgdb_Variants.execute(sql_hpgdb_Variants)
hpgdbInfo1 = cur_hpgdb_Variants.fetchone()
print(hpgdbInfo1)
if hpgdbInfo1 != None:
hpgdbId = hpgdbInfo1[0]
print(hpgdbId)
return render_template('%s.html' % hpgdbId)
### searchhpgdb 根据 Loci 查找hpgdb_main
cur_hpgdb_loci = conn.cursor()
sql_hpgdb_loci = 'select * from hpgdb_main where Loci LIKE "%s"' % args
cur_hpgdb_loci.execute(sql_hpgdb_loci)
hpgdbInfo2 = cur_hpgdb_loci.fetchone()
hpgdb_info_list = []
hpgdb_info_list.append(hpgdbInfo2)
if hpgdbInfo2 != None:
return render_template('gene_search.html', hpgdb_info_list=hpgdb_info_list)
#cur_hpgdb_Phenotype = conn.cursor()
#sql_hpgdb_Phenotype = 'select Phenotype from hpgdb_main where Loci LIKE "%s"' % args
#cur_hpgdb_Phenotype.execute(sql_hpgdb_Phenotype)
#hpgdbInfo3 = cur_hpgdb_Phenotype.fetchone()
#if hpgdbInfo3 != None:
# hpgdbId3 = hpgdbInfo3[0]
# return render_template('%s.html' % hpgdbId3)
else:
return render_template('NotFound.html')
@app.route('/Help')
def Help():
return render_template('Help.html')
if __name__ == '__main__':
# getDrugList()
app.run(port=5011,debug=True)