updating status

Author: mwang87

Dockerfile

@@ -14,7 +14,7 @@ LABEL about.license="SPDX:Unknown"
 LABEL about.tags="Proteomics"
 
 ################## INSTALLATION ######################
-RUN apt-get update && apt-get install -y git
+RUN apt-get update && apt-get install -y git lftp libarchive-dev
 
 ################## INSTALLATION OF MONO ######################
 RUN apt-get update && apt -y install apt-transport-https dirmngr gnupg ca-certificates
@@ -26,9 +26,12 @@ WORKDIR /src
 RUN git clone -b master --single-branch https://github.com/compomics/ThermoRawFileParser --branch v1.3.2 /src
 RUN xbuild
 
+# Installing Mamba
+RUN conda install -c conda-forge mamba
+
 # Python Package Installations
-RUN conda install -c conda-forge datashader=0.12.1
-RUN conda install -c conda-forge openjdk=11.0.9.1
+RUN mamba install -c conda-forge datashader=0.12.1
+RUN mamba install -c conda-forge openjdk=11.0.9.1
 
 COPY requirements.txt .
 RUN pip install -r requirements.txt
@@ -38,9 +41,6 @@ RUN pip install -r requirements.txt
 # RUN chmod +x ibm-aspera-connect_4.1.0.46-linux_x86_64.sh
 # RUN ./ibm-aspera-connect_4.1.0.46-linux_x86_64.sh
 
-# Install lftp
-RUN apt-get update && apt-get install -y lftp
-
 
 COPY . /app
 WORKDIR /app

app.py

@@ -86,11 +86,11 @@
 
 server.wsgi_app = ProxyFix(server.wsgi_app, x_for=1, x_host=1)
 
-limiter = Limiter(
-    server,
-    key_func=get_remote_address,
-    default_limits=["10000 per hour"]
-)
+# limiter = Limiter(
+#     server,
+#     key_func=get_remote_address,
+#     default_limits=["10000 per hour"]
+# )
 
 # Optionally turn on caching
 if __name__ == "__main__":

requirements.txt

@@ -35,4 +35,5 @@ qrcode
 pyarrow
 celery==5.2.2
 celery_once==3.0.1
-massql==0.0.12
+massql==0.0.12
+numpy==1.23.1