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input

This directory contains the input data used to generate the WoodKG knowledge graph.

iawa_thesaurus

  • raw/: contains a TSV file representing the IAWA thesaurus modeling, developed by the WIMMICS team. This is an export from this Google Sheet
  • currated/: contains three JSON files:

    • foiAndOP.json: two dictionaries referencing the features of interest and observable properties with their respective identifiers.

    • values.json: contains the values of the observable properties, in the following format:

            "001002": {
          "value": "boundaries distinct or indistinct or absent",
          "property": "boundary marks",
          "feature": "growth ring"
      }

      Some values correspond to unions. Links to foiAndOP.json are made via the property and feature fields.

    • iawa_thesaurus.json: file used by Morph-xR2RML to generate the thesaurus RDF.

cepam_observations

  • raw/: contains a downloadable CSV file of observations provided by researchers of the CEPAM.
  • currated/: contains a transformed version of this file in JSON format.

JSON structure example:

    {
        "Taxon": "Sclerocarya birrea subsp caffra",
        "sampleID": "BRS18-2-31",
        "001": "1",
        "005": "5"
    }

Property identifiers are normalized to three digits.

insidewood_observations

  • raw/: contains a CSV file downloadable from the InsideWood website: https://insidewood.lib.ncsu.edu/search. Do get it you must do a search by IAWA code (e.g. '1p') or keyword. Then, on the Search Results page, click the "Select All Description Results" checkbox and "Export nnn Selected Results" link.
  • currated/: contains a transformed version of this file, in the same format as CEPAM.

powo

  • raw/: contains the raw version of the CSV file downloaded from POWO (WCVP).
  • currated/: contains its transformed JSON version, usable by Morph-xR2RML.