Workflow(check): adding R CMD check workflow

Author: patrickCNMartin

.github/workflows/R-CMD-check.yaml

@@ -0,0 +1,34 @@
+name: R-CMD-check
+
+on:
+  push:
+    branches: [main, master]
+  pull_request:
+  workflow_dispatch:
+
+jobs:
+  R-CMD-check:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v4
+
+      - uses: r-lib/actions/setup-r@v2
+        with:
+          use-public-rspm: true
+
+      - name: Install dependencies
+        run: |
+          Rscript -e 'install.packages("remotes")'
+          Rscript -e 'remotes::install_deps(dependencies = TRUE)'
+
+      - name: Install renv
+        run: Rscript -e 'install.packages("renv")'
+
+      - name: Restore project environment from renv.lock
+        run: Rscript -e 'renv::restore()'
+
+      - name: Build package
+        run: R CMD build .
+
+      - name: Check package
+        run: R CMD check --no-manual --as-cran *.tar.gz

.github/workflows/pkgdown.yaml

@@ -1,5 +1,4 @@
 # Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
-# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
     branches: [main, master]
@@ -15,7 +14,6 @@ permissions: read-all
 jobs:
   pkgdown:
     runs-on: ubuntu-latest
-    # Only restrict concurrency for non-PR jobs
     concurrency:
       group: pkgdown-${{ github.event_name != 'pull_request' || github.run_id }}
     env:
@@ -31,10 +29,11 @@ jobs:
         with:
           use-public-rspm: true
 
-      - uses: r-lib/actions/setup-r-dependencies@v2
-        with:
-          extra-packages: any::pkgdown, local::.
-          needs: website
+      - name: Install renv
+        run: Rscript -e 'install.packages("renv")'
+
+      - name: Restore project environment from renv.lock
+        run: Rscript -e 'renv::restore()'
 
       - name: Build site
         run: pkgdown::build_site_github_pages(new_process = FALSE, install = FALSE)

README.md

@@ -1,6 +1,7 @@
 [![DOI](https://zenodo.org/badge/306332649.svg)](https://zenodo.org/badge/latestdoi/306332649)
 [![DOI](https://zenodo.org/badge/DOI/10.5281/zenodo.15733817.svg)](https://doi.org/10.5281/zenodo.15733817)
 
+![R-CMD-check](https://github.com/WonLab-CS/Vesalius/actions/workflows/R-CMD-check.yml/badge.svg?branch=main)
 
 # Vesalius
 

vignettes/vesalius.Rmd

@@ -55,9 +55,6 @@ will apply for other modalities. For examples using other modalities,
 please refer to the other articles.
 
 ```{r loading, eval = TRUE, echo = TRUE}
-suppressMessages(library(vesalius))
-library(renv)
-renv::restore(lockfile = "../renv.lock")
 libary(vesalius)
 data(vesalius, package = "vesalius")