debug ci

Author: patrickCNMartin

.github/workflows/R-CMD-check.yaml

@@ -1,27 +1,32 @@
-name: R-CMD-check
-
+name: R CMD Check
 on:
   push:
-    branches: [ main, master ]
+    branches: [main]
   pull_request:
-    branches: [ main, master ]
+    branches: [main]
 
 jobs:
-  check:
+  R-CMD-Check:
     runs-on: ubuntu-latest
-    env:
-      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
-      R_KEEP_PKG_SOURCE: yes
-
     steps:
       - uses: actions/checkout@v4
-
-      - uses: r-lib/actions/setup-r@v2
-        with:
-          r-version: '4.5.1' # Specify your desired R version
-
-      - uses: r-lib/actions/setup-renv@v2 # Installs packages from renv.lock
-
-      - uses: r-lib/actions/check-r-package@v2
+      - name: Set up R
+        uses: r-lib/actions/setup-r@v2
         with:
-          args: '--no-manual --as-cran' # Example arguments for R CMD check
+          r-version: '4.5.1' # Match your Docker image’s R version
+      - name: Install system dependencies
+        run: |
+          sudo apt-get update
+          sudo apt-get install -y r-base-dev
+      - name: Debug environment
+        run: |
+          R --version
+          gcc --version
+          R -e "sessionInfo()"
+          ls -l /opt/R/4.5.1/lib/R/include
+      - name: Install renv
+        run: R -e "install.packages('renv')"
+      - name: Restore renv
+        run: R -e "renv::restore(binary = TRUE)"
+      - name: Run R CMD check
+        uses: r-lib/actions/check-r-package@v2