Update workflow

Author: patrickCNMartin

.github/workflows/R-CMD-BioCheck.yaml

@@ -1,29 +1,51 @@
-name: R-CMD-check
-
+# Workflow derived from https://github.com/r-lib/actions/tree/v2/examples
+# Need help debugging build failures? Start at https://github.com/r-lib/actions#where-to-find-help
 on:
   push:
-    branches: [main, master]
+    branches: [main, master, v2-branch]
   pull_request:
-  workflow_dispatch:
+
+name: R-CMD-check.yaml
+
+permissions: read-all
 
 jobs:
   R-CMD-check:
-    runs-on: ubuntu-latest
+    runs-on: ${{ matrix.config.os }}
+
+    name: ${{ matrix.config.os }} (${{ matrix.config.r }})
+
+    strategy:
+      fail-fast: false
+      matrix:
+        config:
+          - {os: macos-latest,   r: 'release'}
+          - {os: windows-latest, r: 'release'}
+          - {os: ubuntu-latest,   r: 'devel', http-user-agent: 'release'}
+          - {os: ubuntu-latest,   r: 'release'}
+          - {os: ubuntu-latest,   r: 'oldrel-1'}
+
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      R_KEEP_PKG_SOURCE: yes
+
     steps:
-      - uses: actions/checkout@v4
+      - uses: actions/checkout@0ad4b8fadaa221de15dcec353f45205ec38ea70b
+
+      - uses: ./setup-pandoc
 
-      - uses: r-lib/actions/setup-r@v2
+      - uses: ./setup-r
         with:
+          r-version: ${{ matrix.config.r }}
+          http-user-agent: ${{ matrix.config.http-user-agent }}
           use-public-rspm: true
 
-      - name: Install renv
-        run: Rscript -e 'install.packages("renv")'
-
-      - name: Restore project environment from renv.lock
-        run: Rscript -e 'renv::restore()'
-
-      - name: Build package
-        run: R CMD build .
+      - uses: ./setup-r-dependencies
+        with:
+          extra-packages: any::rcmdcheck
+          needs: check
 
-      - name: Check package
-        run: R CMD check --no-manual --as-cran *.tar.gz
+      - uses: ./check-r-package
+        with:
+          upload-snapshots: true
+          build_args: 'c("--no-manual","--compact-vignettes=gs+qpdf")'