pyproject.toml

# Ref: https://github.com/atlassian-api/atlassian-python-api/blob/master/pyproject.toml


[project]
name = "tbkb-ncbi-sync"

[[tool.mypy.overrides]]
module = "Bio,pycountry"
ignore_missing_imports = true

[tool.black]
target-version = ['py39']
line-length = 120
include_trailing_comma = false
skip-magic-trailing-comma = true
preview = true

[tool.pylint.format]
max-line-length = 120
max-module-lines = 1000

[tool.pylint.MASTER]
# Use multiple processes to speed up Pylint. Specifying 0 will auto-detect the
# number of processors available to use.
jobs = 0

# When enabled, pylint would attempt to guess common misconfiguration and emit
# user-friendly hints instead of false-positive error messages.
suggestion-mode = 'yes'

[tool.pylint.messages_control]


# Only show warnings with the listed confidence levels. Leave empty to show
# all. Valid levels: HIGH, INFERENCE, INFERENCE_FAILURE, UNDEFINED.
confidence = ''

# Disable the message, report, category or checker with the given id(s). You
# can either give multiple identifiers separated by comma (,) or put this
# option multiple times (only on the command line, not in the configuration
# file where it should appear only once). You can also use "--disable=all" to
# disable everything first and then reenable specific checks. For example, if
# you want to run only the similarities checker, you can use "--disable=all
# --enable=similarities". If you want to run only the classes checker, but have
# no Warning level messages displayed, use "--disable=all --enable=classes
# --disable=W".
disable = '''
        eq-without-hash,
        missing-module-docstring,
        missing-class-docstring,
        missing-function-docstring,
        W,
'''

[tool.pylint.DESIGN]

# Maximum number of arguments for function / method.
max-args = 5

# Maximum number of attributes for a class (see R0902).
max-attributes = 7

# Maximum number of boolean expressions in an if statement (see R0916).
max-bool-expr = 5

# Maximum number of branch for function / method body.
max-branches = 12

# Maximum number of locals for function / method body.
max-locals = 15

# Maximum number of parents for a class (see R0901).
max-parents = 7

# Maximum number of public methods for a class (see R0904).
max-public-methods = 20

# Maximum number of return / yield for function / method body.
max-returns = 6

# Maximum number of statements in function / method body.
max-statements = 50

# Minimum number of public methods for a class (see R0903).
min-public-methods = 2

[tool.pylint.MISCELLANEOUS]

# List of note tags to take in consideration, separated by a comma.
notes = '''FIXME,
      XXX,
      TODO
'''


[tool.pylint.SIMILARITIES]

# Ignore comments when computing similarities.
ignore-comments = 'yes'

# Ignore docstrings when computing similarities.
ignore-docstrings = 'yes'

# Ignore imports when computing similarities.
ignore-imports = 'no'

# Minimum lines number of a similarity.
min-similarity-lines = 4


[tool.pylint.BASIC]
# Good variable names which should always be accepted, separated by a comma.
good-names = '''i,
           j,
           k,
           ex,
           e,
           Run,
           pk,
           fd,
           x,
           y,
           _,
           db,
           app,
           id,
           a,
           b,
           c
'''

[tool.poetry]
name = "tbkb-ncbi-sync"
version = "0.1.0"
description = ""
authors = ["beketx <beketx@gmail.com>", "Denis Tomilin <dt0xff@gmail.com>"]
readme = "README.md"

[tool.poetry.dependencies]
python = "^3.9"
boto3 = "^1.26.27"
biopython = "^1.80"
pycountry = "^22.3.5"
pytest = "^7.2.0"
pytest-cov = "^4.0.0"
pytest-mock = "^3.10.0"
python-dateutil = "^2.8.2"
psycopg-binary = "^3.2.3"
psycopg = "^3.2.3"


[tool.poetry.group.dev.dependencies]
pylint = "^2.15.8"
autoflake = "^2.0.0"
mypy = "^0.991"
types-psycopg2 = "^2.9.21.2"
types-python-dateutil = "^2.8.19.4"
boto3-stubs = "^1.26.27"

[build-system]
requires = ["poetry-core"]
build-backend = "poetry.core.masonry.api"