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Move stringi import to before GenomicFeatures import
1 parent b4e3e18 commit 1fc9a93

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Lines changed: 3 additions & 3 deletions

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xpresspipe/RbuildIndex.r

Lines changed: 3 additions & 3 deletions
Original file line numberDiff line numberDiff line change
@@ -54,6 +54,9 @@ sub_license <- function() {
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# Install dependencies
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if (!requireNamespace("BiocManager", quietly = TRUE)) {install.packages("BiocManager", repos = "http://cran.us.r-project.org")}
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install.packages("stringi", repos = "http://cran.us.r-project.org")
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library(stringi)
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if ("GenomicFeatures" %in% rownames(installed.packages()) == FALSE) {
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print("Installing GenomicFeatures...")
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BiocManager::install("GenomicFeatures", dependencies=c("Depends", "Imports", "LinkingTo"))
@@ -63,9 +66,6 @@ if ("GenomicFeatures" %in% rownames(installed.packages()) == FALSE) {
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library(GenomicFeatures)
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install.packages("stringi", repos = "http://cran.us.r-project.org")
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library(stringi)
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if ("data.table" %in% rownames(installed.packages()) == FALSE) {
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print("Installing data.table...")
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install.packages("data.table", repos = "http://cran.us.r-project.org")

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