Prevent removing metaposit files

Author: j-berg

xpresspipe/Rmetagene.r

@@ -119,11 +119,11 @@ run_list <- function (
       write.table(bam, file=output_file, sep='\t', col.names=NA)
 
       # Clean the batch
-      rm(file)
-      rm(bam)
-      rm(file_name)
-      rm(output_file)
-      gc()
+      #rm(file)
+      #rm(bam)
+      #rm(file_name)
+      #rm(output_file)
+      #gc()
     }
   }
 

xpresspipe/metagene.py

@@ -137,9 +137,9 @@ def finish_metagene(
     dict = None
     profile = None
     gc.collect()
-    os.system(
-        'rm'
-        + ' ' + str(args_dict['metagene']) + 'metrics/' + str(file).split('.')[0] + '.metaposit')
+    #os.system(
+    #    'rm'
+    #    + ' ' + str(args_dict['metagene']) + 'metrics/' + #str(file).split('.')[0] + '.metaposit')
 
 def run_metagene(args):