v1.24 (2025.12)

Author: YongxinLiu

0Install.sh

@@ -225,7 +225,7 @@
     wget -c http://ftp.ensemblgenomes.org/pub/plants/release-51/fasta/arabidopsis_thaliana/dna/Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz
     mv Arabidopsis_thaliana.TAIR10.dna.toplevel.fa.gz tair10.fa.gz
     # unzip and index, 3 minutes (解压，建索引，120M 3分钟)
-    gunzip tair10.fa.gz`
+    gunzip tair10.fa.gz
     time bowtie2-build -f tair10.fa tair10 --threads 4
     cd ${db}
 
@@ -731,7 +731,7 @@
     tar xvzf uniref100.KO.1.dmnd.tar.gz
 
     #指定数据库
-    export CHECKM2DB="/data/meta/db/checkm2/CheckM2_database/uniref100.KO.1.dmnd"  
+    export CHECKM2DB="${db}/checkm2/CheckM2_database/uniref100.KO.1.dmnd"  
     # 测试
     checkm2 testrun
 

2StatPlot.sh

@@ -9,7 +9,7 @@
     # Cititon(引文): Bai, et al. 2025. EasyMetagenome: A User‐Friendly and Flexible Pipeline for Shotgun Metagenomic Analysis in Microbiome Research. iMeta 4: e70001. https://doi.org/10.1002/imt2.70001
 
     # Set work directory(设置工作目录)
-    wd=/d/meta/result
+    wd=/d/Download/github/EasyMetagenome/result
     sd=/d/Download/github/EasyMicrobiome/script
     PATH=$PATH:$sd/../win:$sd
     cd $wd