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YongxinLiuYongxinLiu
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1.20(2023.11)
1 parent 6325736 commit 73f3c75

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Lines changed: 762 additions & 0 deletions

‎result/metaphlan4/heatmap/Ring_legend_inner-outer.txt‎

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Inner2Outer Range_min Range_max V4
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Cancer 0.0705 26.154 blue

‎result/metaphlan4/heatmap/graphlan.xml‎

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‎result/metaphlan4/heatmap/graphlan1_tree_heatmap.pdf‎

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‎result/metaphlan4/heatmap/graphlan1_tree_raw.pdf‎

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‎result/metaphlan4/heatmap/graphlan_annotate.txt‎

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ignore_branch_len 0
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total_plotted_degrees 360
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start_rotation -96
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clade_separation 0
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branch_bracket_depth 0.8
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branch_bracket_width 0.5
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branch_thickness 0.75
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branch_color black
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branch_color_from_ancestor 1
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annotation_background_width 0.6
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annotation_background_alpha 0.2
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annotation_background_separation -0.5
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annotation_background_offset 0.02
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annotation_legend_font_size 7
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clade_marker_size 16
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clade_marker_shape o
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clade_marker_edge_width 0.25
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clade_marker_edge_color black
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clade_marker_font_color k
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p__Actinobacteria* clade_marker_color #EF5656
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p__Proteobacteria* clade_marker_color #2BB065
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p__Bacteroidetes* clade_marker_color #47B3DA
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p__Firmicutes* clade_marker_color #F7A415
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p__Proteobacteria annotation_background_color #B0FFC0
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p__Actinobacteria annotation_background_color #FFB0B0
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p__Bacteroidetes annotation_background_color #B0E9FD
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p__Firmicutes annotation_background_color #FCDBA2
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Sphingomonadaceae annotation *
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Sphingomonadaceae annotation_rotation 90
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Sphingomonadaceae annotation_background_color #85F29B
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Pasteurellaceae annotation *
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Pasteurellaceae annotation_rotation 90
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Pasteurellaceae annotation_background_color #85F29B
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Flavobacteriaceae annotation *
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Flavobacteriaceae annotation_rotation 90
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Flavobacteriaceae annotation_background_color #91DBF6
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Prevotellaceae annotation *
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Prevotellaceae annotation_rotation 90
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Prevotellaceae annotation_background_color #91DBF6
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Fusobacteriaceae annotation *
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Fusobacteriaceae annotation_rotation 90
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Fusobacteriaceae annotation_background_color grey
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unclassified annotation *
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unclassified annotation_rotation 90
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unclassified annotation_background_color #F7C875
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Peptostreptococcaceae annotation *
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Peptostreptococcaceae annotation_rotation 90
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Peptostreptococcaceae annotation_background_color #F7C875
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Porphyromonadaceae annotation *
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Porphyromonadaceae annotation_rotation 90
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Porphyromonadaceae annotation_background_color #91DBF6
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Lachnospiraceae annotation *
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Lachnospiraceae annotation_rotation 90
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Lachnospiraceae annotation_background_color #F7C875
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Leptotrichiaceae annotation *
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Leptotrichiaceae annotation_rotation 90
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Leptotrichiaceae annotation_background_color grey
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FGB1762 annotation *
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FGB1762 annotation_rotation 90
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FGB1762 annotation_background_color #F7C875
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Erysipelotrichaceae annotation *
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Erysipelotrichaceae annotation_rotation 90
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Erysipelotrichaceae annotation_background_color #F7C875
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ring_internal_separator_thickness 1 0.5
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ring_width 1 1
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ring_color 1 blue
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SGB11681 ring_alpha 1 26.154
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SGB9631 ring_alpha 1 16.2091
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SGB2502 ring_alpha 1 11.9203
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SGB1561 ring_alpha 1 7.7504
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SGB6001 ring_alpha 1 4.5601
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SGB6014 ring_alpha 1 4.4487
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SGB9663_group ring_alpha 1 4.4381
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SGB1464 ring_alpha 1 3.7828
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SGB1410 ring_alpha 1 3.4058
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SGB1552 ring_alpha 1 3.1988
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SGB7295 ring_alpha 1 2.7689
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SGB6011 ring_alpha 1 2.4307
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SGB6629 ring_alpha 1 2.3086
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SGB2492 ring_alpha 1 1.2895
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SGB6007 ring_alpha 1 1.2009
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SGB2043 ring_alpha 1 0.857
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SGB24947 ring_alpha 1 0.7375
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SGB6069 ring_alpha 1 0.6402
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SGB2477 ring_alpha 1 0.63
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SGB94822 ring_alpha 1 0.5675
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SGB9737_group ring_alpha 1 0.2936
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SGB6826 ring_alpha 1 0.2371
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SGB6891 ring_alpha 1 0.1
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SGB749 ring_alpha 1 0.0705

‎result/metaphlan4/heatmap/taxonomy_mean.spf‎

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Strain Cancer
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SGB11681 26.154
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SGB9631 16.2091
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SGB2502 11.9203
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SGB1561 7.7504
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SGB6001 4.5601
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SGB6014 4.4487
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SGB9663_group 4.4381
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SGB1464 3.7828
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SGB1410 3.4058
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SGB1552 3.1988
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SGB7295 2.7689
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SGB6011 2.4307
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SGB6629 2.3086
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SGB2492 1.2895
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SGB6007 1.2009
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SGB2043 0.857
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SGB24947 0.7375
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SGB6069 0.6402
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SGB2477 0.63
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SGB94822 0.5675
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SGB9737_group 0.2936
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SGB6826 0.2371
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SGB6891 0.1
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SGB749 0.0705

‎result/metaphlan4/heatmap/tree1_backbone.txt‎

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p__Proteobacteria.c__Alphaproteobacteria.o__Sphingomonadales.Sphingomonadaceae.g__Sphingomonas.s__Sphingomonas_melonis.SGB11681
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p__Proteobacteria.c__Gammaproteobacteria.o__Pasteurellales.Pasteurellaceae.g__Haemophilus.s__Haemophilus_sputorum.SGB9631
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p__Bacteroidetes.c__Flavobacteriia.o__Flavobacteriales.Flavobacteriaceae.g__Capnocytophaga.s__Capnocytophaga_sputigena.SGB2502
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p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.Prevotellaceae.g__Prevotella.s__Prevotella_nigrescens.SGB1561
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p__Fusobacteria.c__Fusobacteriia.o__Fusobacteriales.Fusobacteriaceae.g__Fusobacterium.s__Fusobacterium_nucleatum.SGB6001
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p__Fusobacteria.c__Fusobacteriia.o__Fusobacteriales.Fusobacteriaceae.g__Fusobacterium.s__Fusobacterium_nucleatum.SGB6014
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p__Proteobacteria.c__Gammaproteobacteria.o__Pasteurellales.Pasteurellaceae.g__Haemophilus.s__Haemophilus_parainfluenzae.SGB9663_group
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p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.Prevotellaceae.g__Alloprevotella.s__Alloprevotella_sp_oral_taxon_473.SGB1464
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p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.Prevotellaceae.g__Alloprevotella.s__Alloprevotella_SGB1410.SGB1410
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p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.Prevotellaceae.g__Prevotella.s__Prevotella_melaninogenica.SGB1552
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p__Firmicutes.c__Bacilli.o__Bacillales.unclassified.g__Gemella.s__Gemella_morbillorum.SGB7295
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p__Fusobacteria.c__Fusobacteriia.o__Fusobacteriales.Fusobacteriaceae.g__Fusobacterium.s__Fusobacterium_nucleatum.SGB6011
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p__Firmicutes.c__Clostridia.o__Eubacteriales.Peptostreptococcaceae.g__Filifactor.s__Filifactor_alocis.SGB6629
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p__Bacteroidetes.c__Flavobacteriia.o__Flavobacteriales.Flavobacteriaceae.g__Capnocytophaga.s__Capnocytophaga_leadbetteri.SGB2492
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p__Fusobacteria.c__Fusobacteriia.o__Fusobacteriales.Fusobacteriaceae.g__Fusobacterium.s__Fusobacterium_nucleatum.SGB6007
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p__Bacteroidetes.c__Bacteroidia.o__Bacteroidales.Porphyromonadaceae.g__Porphyromonas.s__Porphyromonas_pasteri.SGB2043
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p__Firmicutes.c__Clostridia.o__Eubacteriales.Lachnospiraceae.g__unclassified.s__Lachnospiraceae_bacterium_oral_taxon_500.SGB24947
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p__Fusobacteria.c__Fusobacteriia.o__Fusobacteriales.Leptotrichiaceae.g__Leptotrichia.s__Leptotrichia_SGB6069.SGB6069
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p__Bacteroidetes.c__Flavobacteriia.o__Flavobacteriales.Flavobacteriaceae.g__GGB1833.s__GGB1833_SGB2477.SGB2477
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p__Firmicutes.c__CFGB1762.o__OFGB1762.FGB1762.g__GGB4533.s__GGB4533_SGB94822.SGB94822
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p__Proteobacteria.c__Gammaproteobacteria.o__Pasteurellales.Pasteurellaceae.g__Aggregatibacter.s__Aggregatibacter_segnis.SGB9737_group
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p__Firmicutes.c__Erysipelotrichia.o__Erysipelotrichales.Erysipelotrichaceae.g__Solobacterium.s__Solobacterium_moorei.SGB6826
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p__Candidatus_Absconditabacteria.c__unclassified.o__unclassified.unclassified.g__GGB4937.s__GGB4937_SGB6891.SGB6891
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p__Firmicutes.c__Clostridia.o__Eubacteriales.Peptostreptococcaceae.g__Peptostreptococcus.s__Peptostreptococcus_SGB749.SGB749

‎result/metaphlan4/heatmap/tree2_label_color.txt‎

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Sphingomonadaceae annotation *
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Sphingomonadaceae annotation_rotation 90
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Sphingomonadaceae annotation_background_color #85F29B
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Pasteurellaceae annotation *
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Pasteurellaceae annotation_rotation 90
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Pasteurellaceae annotation_background_color #85F29B
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Flavobacteriaceae annotation *
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Flavobacteriaceae annotation_rotation 90
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Flavobacteriaceae annotation_background_color #91DBF6
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Prevotellaceae annotation *
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Prevotellaceae annotation_rotation 90
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Prevotellaceae annotation_background_color #91DBF6
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Fusobacteriaceae annotation *
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Fusobacteriaceae annotation_rotation 90
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Fusobacteriaceae annotation_background_color grey
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unclassified annotation *
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unclassified annotation_rotation 90
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unclassified annotation_background_color #F7C875
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Peptostreptococcaceae annotation *
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Peptostreptococcaceae annotation_rotation 90
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Peptostreptococcaceae annotation_background_color #F7C875
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Porphyromonadaceae annotation *
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Porphyromonadaceae annotation_rotation 90
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Porphyromonadaceae annotation_background_color #91DBF6
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Lachnospiraceae annotation *
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Lachnospiraceae annotation_rotation 90
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Lachnospiraceae annotation_background_color #F7C875
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Leptotrichiaceae annotation *
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Leptotrichiaceae annotation_rotation 90
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Leptotrichiaceae annotation_background_color grey
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FGB1762 annotation *
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FGB1762 annotation_rotation 90
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FGB1762 annotation_background_color #F7C875
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Erysipelotrichaceae annotation *
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Erysipelotrichaceae annotation_rotation 90
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Erysipelotrichaceae annotation_background_color #F7C875

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