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@@ -4,7 +4,7 @@ This repository contains notebooks and scripts to reproduce analyses benchmarkin
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(see [manuscript](https://www.biorxiv.org/content/10.1101/2024.03.01.582887v1)).
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We provide HuggingFace scvi-hub models at [HuggingFace](https://huggingface.co/scvi-tools) and recommend reviewing the [scvi-tools](https://scvi-tools.org/) documentation to get started. Especially [CELLxGENE hub](https://docs.scvi-tools.org/en/stable/tutorials/notebooks/hub/cellxgene_census_model.html)
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highlights how to use the CELLxGENE census reference model. We provide the version of scvi-tools to reproduce the findings in this repo. Scvi-tools is continuously developed and future versions might use a different API.
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highlights how to use the CELLxGENE census reference model.
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## Repository structure
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We provide here all notebooks to reproduce the results. Data and reference models are pulled from public repositories on 03/10/24. The census soma object
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