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_data/publications.yml

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preprint: true
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scvitools: false
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- authors: "immgenT Project"
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title: "immgenT: A Comprehensive Reference of Convergent T-cell States in the Mouse"
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details: bioRxiv
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pmid:
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pmcid:
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openaccess:
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doi: 10.48550/arXiv.2604.09076
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file:
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filetype:
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biorxiv:
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arxiv:
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contentshare:
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preprint: true
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scvitools: false
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- authors: "E. Weinberger, W. Qiu, W. Tian, Q. Zeng, C. Ergen, O. Kronfeld, M. Kim, N. Yosef, JR. Ecker, S. Lee"
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title: "Probabilistic modelling of single-cell bisulfite sequencing data with MethylVI"
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details: Nat Mach Intell
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year: 2026
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pmid:
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pmcid:
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openaccess:
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doi: 10.1038/s42256-026-01225-9
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file:
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filetype:
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biorxiv:
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arxiv:
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contentshare:
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preprint: true
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scvitools: false
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- authors: "C. Ergen, N. Yosef"
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title: "ResolVI - addressing noise and bias in spatial transcriptomics"
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details: Nature Methods (accepted)
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contentshare:
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preprint: true
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scvitools: true
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# 2025
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- authors: "SB. Wells\\*, DB. Rainbow\\*, M. Mark\\*, PA. Szabo\\*, C. Ergen\\*, A. Maceiras\\*, DP. Caron, E. Rahmani, E. Benuck, V. Pour Amiri, D. Chen, A. Wagner, SK. Howlett, LB. Jarvis, KL. Ellis, M. Kubota, R. Matsumoto, K. Mahbubani, K. Saeb-Parsy, C. Dominguez-Conde, L. Richardson, C. Xu, S. Li, L. Mamanova, L. Bolt, A. Wilk, SA. Teichmann†, DL. Farber†, PA. Sims†, JL. Jones†, N. Yosef†"

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